##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138687_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 16067893 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.03177784417658 33.0 31.0 34.0 30.0 34.0 2 32.2994538238461 34.0 31.0 34.0 30.0 34.0 3 32.313995805174955 34.0 31.0 34.0 30.0 34.0 4 35.991662877018165 37.0 35.0 37.0 35.0 37.0 5 35.73007574795277 37.0 35.0 37.0 35.0 37.0 6 35.82469985330373 37.0 35.0 37.0 35.0 37.0 7 35.77486699718501 37.0 35.0 37.0 33.0 37.0 8 35.78884624138336 37.0 35.0 37.0 33.0 37.0 9 37.55838217244788 39.0 37.0 39.0 35.0 39.0 10-11 37.45617197600208 39.0 37.0 39.0 34.5 39.0 12-13 37.41064179976802 39.0 37.0 39.0 34.0 39.0 14-15 38.64575523374471 40.0 38.0 41.0 34.0 41.0 16-17 38.59638037171395 40.0 38.0 41.0 34.0 41.0 18-19 38.60434423480415 40.0 38.0 41.0 34.0 41.0 20-21 38.622457741072665 40.0 38.0 41.0 34.0 41.0 22-23 38.54009849621983 40.0 38.0 41.0 34.0 41.0 24-25 38.45350680084819 40.0 38.0 41.0 34.0 41.0 26-27 38.277979182018996 40.0 38.0 41.0 34.0 41.0 28-29 38.143638528293266 40.0 38.0 41.0 33.0 41.0 30-31 37.99583085095205 40.0 37.0 41.0 33.0 41.0 32-33 37.8311273597993 40.0 37.0 41.0 33.0 41.0 34-35 37.785024837297755 40.0 37.0 41.0 33.0 41.0 36-37 37.796946461088666 40.0 37.0 41.0 33.0 41.0 38-39 37.749226398609764 40.0 37.0 41.0 33.0 41.0 40-41 37.786744699515694 40.0 37.0 41.0 33.0 41.0 42-43 37.84365411242682 40.0 37.0 41.0 33.0 41.0 44-45 37.81483584313558 40.0 37.0 41.0 33.0 41.0 46-47 37.70228064563415 40.0 37.0 41.0 33.0 41.0 48-49 37.60068243771181 40.0 36.0 41.0 32.0 41.0 50-51 37.48564584850277 39.5 36.0 41.0 32.0 41.0 52-53 37.294379986975244 39.0 36.0 41.0 31.5 41.0 54-55 37.14020788877859 39.0 35.0 41.0 31.0 41.0 56-57 36.95563780376732 39.0 35.0 40.5 31.0 41.0 58-59 36.69784884831212 38.0 35.0 40.0 31.0 41.0 60-61 36.48685821080171 38.0 35.0 40.0 31.0 41.0 62-63 36.233152249237605 37.5 35.0 40.0 30.5 41.0 64-65 35.9022704017878 37.0 34.0 40.0 30.0 41.0 66-67 35.55829605314896 36.5 34.0 39.0 30.0 41.0 68-69 35.29335378217044 36.0 34.0 39.0 29.0 41.0 70-71 34.90984875734604 35.5 34.0 39.0 29.0 40.0 72-73 34.631631194261715 35.0 34.0 37.5 29.0 40.0 74-75 34.326467404036684 35.0 33.0 37.0 29.0 39.0 76-77 32.982177132612264 34.0 31.5 36.0 27.0 38.5 78-79 33.79901383365659 35.0 33.0 36.0 29.0 39.0 80-81 33.80257334894349 35.0 33.0 36.0 29.0 37.5 82-83 33.604726817868375 35.0 33.0 35.5 29.0 37.0 84-85 33.44086622035366 35.0 33.0 35.0 29.0 37.0 86-87 33.248593849354364 35.0 33.0 35.0 29.0 36.0 88-89 33.1758771243967 35.0 33.0 35.0 29.0 36.0 90-91 33.103025226015056 35.0 33.0 35.0 29.0 36.0 92-93 32.95418022033383 35.0 33.0 35.0 29.0 35.5 94-95 32.99273193690526 35.0 33.0 35.0 29.0 35.0 96-97 33.06241549023826 34.0 33.0 35.0 29.0 35.0 98-99 33.17404804400003 34.0 33.0 35.0 29.0 35.0 100 31.917419322247948 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 0.0 12 0.0 13 0.0 14 2.0 15 0.0 16 1.0 17 0.0 18 7.0 19 27.0 20 149.0 21 661.0 22 2895.0 23 9851.0 24 25245.0 25 53278.0 26 95359.0 27 149039.0 28 213428.0 29 282022.0 30 358375.0 31 445346.0 32 552774.0 33 701969.0 34 942673.0 35 1317905.0 36 2069554.0 37 3349060.0 38 3492576.0 39 1932246.0 40 73449.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.02619515825752 19.70731943509955 13.09452956899825 24.171955837644674 2 15.986744497240554 21.116216046497197 39.157386721457506 23.739652734804746 3 18.849005280281613 25.966354144877613 29.683468765942116 25.501171808898654 4 13.208153676402997 16.969766975670055 37.355121794749316 32.466957553177636 5 13.715824470576198 37.91874267522194 34.52971711972441 13.835715734477445 6 31.396854584480987 36.46292018499252 18.11945723064001 14.020767999886482 7 28.09914778496471 31.951942921203173 22.26964667987271 17.679262613959406 8 26.286041362112634 35.0813451396521 20.626120674316166 18.006492823919103 9 27.00195974668241 15.534301852769369 20.439213778682745 37.02452462186548 10-11 25.793356975927082 25.857998307556567 27.665267001715783 20.683377714800567 12-13 26.14079207522729 23.427125759425955 28.069439471622072 22.362642693724684 14-15 23.26819079514657 24.497966223698402 25.75030217091936 26.483540810235667 16-17 22.82981858046813 27.521262544640724 26.3543808784831 23.29453799640805 18-19 22.868016982687152 26.899049551798733 27.972348334657195 22.26058513085692 20-21 23.871795680901528 25.993842822816287 27.774590105011466 22.359771391270723 22-23 23.623628944638664 25.890784895835118 27.5975864010355 22.887999758490714 24-25 23.209582363824563 26.11172102950905 27.751039112931693 22.927657493734692 26-27 23.125066662306853 26.230143585743104 27.748494891623633 22.89629486032641 28-29 23.081791868550315 26.306135819015353 27.705799782736346 22.906272529697986 30-31 23.41928924463804 26.260552440232143 27.433870500414137 22.88628781471568 32-33 23.0981259791025 26.466263634314497 27.473291283138863 22.96231910344414 34-35 23.183247698395988 26.507298778020004 27.485129906275713 22.82432361730829 36-37 23.39802903350848 26.283352324637487 27.379620111073034 22.938998530781003 38-39 23.092192844361808 26.512057577878995 27.50334405008767 22.89240552767153 40-41 23.39960575009823 26.327538819640374 27.39259283033993 22.880262599921465 42-43 23.269272022783827 26.436383091137106 27.136538217810287 23.15780666826878 44-45 23.27490479820235 26.599261880149843 26.973576986789354 23.15225633485845 46-47 23.39436155591478 26.463092114136806 26.73625403434355 23.406292295604867 48-49 23.326021678436906 26.587974078296554 26.64594486178459 23.44005938148195 50-51 23.171826091392443 26.737617029856725 26.58524479492789 23.505312083822943 52-53 23.47813233129323 26.609947834250054 26.388261348918547 23.523658485538167 54-55 23.464370186253593 26.525193997599583 26.467209750181965 23.543226065964863 56-57 23.441222138685124 26.748751492611405 26.398956032956907 23.41107033574657 58-59 23.351054627787796 26.828028560966892 26.421513448370888 23.399403362874423 60-61 23.499348028629374 26.754874608916435 26.392281976977717 23.35349538547647 62-63 23.48317809385394 26.743998507144575 26.349640638467015 23.423182760534473 64-65 23.421136131477148 26.736934298329018 26.416682349357163 23.425247220836667 66-67 23.53052201041676 26.726370685653418 26.11126280788647 23.631844496043357 68-69 23.419207593243723 26.700146470027335 26.3167724940019 23.563873442727047 70-71 23.414691958836112 26.387822862144045 26.482703650501872 23.71478152851797 72-73 23.564925836863047 26.473317248062518 26.35789927850894 23.603857636565497 74-75 23.187286020167086 26.737510425777277 26.398151167703677 23.677052386351964 76-77 23.390500655035186 26.518555557019823 26.38017789518964 23.710765892755347 78-79 23.341130913017192 26.532916612617264 26.278446510383652 23.847505963981895 80-81 23.441262264987966 26.532607713935963 26.270116690453005 23.756013330623066 82-83 23.45801549440907 26.429735705320688 26.431351277580706 23.680897522689527 84-85 23.634951303475923 26.416700931830682 26.304952870402786 23.643394894290605 86-87 23.284746330143744 26.48543630533856 26.503592085450116 23.72622527906758 88-89 23.461659988300955 26.368466811789464 26.458370098463412 23.711503101446162 90-91 23.572250076265846 26.361887808805456 26.478443355129343 23.58741875979936 92-93 23.62249139967077 26.369287206651233 26.351217937924176 23.657003455753824 94-95 23.344274916403904 26.340020175657042 26.545991419513175 23.76971348842588 96-97 23.385121151590813 26.468980778993778 26.61833004291526 23.527568026500145 98-99 24.540608112588558 28.502328844001994 26.680258810248255 20.276804233161194 100 32.401464954746366 40.014952641549144 27.583582403704483 0.0 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1978.0 1 2347.0 2 5168.5 3 8116.0 4 11106.5 5 18229.5 6 24118.5 7 27965.5 8 30346.5 9 28980.0 10 24798.5 11 20585.5 12 21173.0 13 27900.5 14 45441.0 15 69125.0 16 87088.5 17 96005.5 18 95539.5 19 87485.0 20 75950.5 21 65268.5 22 59711.0 23 61530.5 24 71413.0 25 89422.0 26 116446.0 27 143663.5 28 164148.5 29 190267.0 30 215993.0 31 237791.0 32 270350.5 33 310137.5 34 345844.5 35 384281.5 36 431286.5 37 466316.5 38 488030.0 39 502826.0 40 519941.5 41 537995.5 42 554335.5 43 580301.0 44 607686.0 45 633181.0 46 653892.0 47 674731.0 48 696823.0 49 715905.0 50 731895.5 51 742822.0 52 742198.5 53 738372.0 54 732005.0 55 709897.0 56 671421.5 57 623588.5 58 570495.5 59 506710.0 60 438386.0 61 368539.0 62 299829.5 63 237225.5 64 182400.5 65 138066.5 66 101983.0 67 76003.0 68 56985.0 69 40444.5 70 28013.0 71 18539.0 72 12172.5 73 7981.5 74 5191.0 75 3509.0 76 2437.0 77 1634.0 78 1068.5 79 717.5 80 495.0 81 324.0 82 224.5 83 153.0 84 98.5 85 63.5 86 47.5 87 41.0 88 33.0 89 23.0 90 14.5 91 8.5 92 5.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.5870157960349874E-4 18-19 0.0 20-21 8.993450807302247E-4 22-23 5.321890169818404E-4 24-25 7.159589682047603E-4 26-27 0.002410295211649611 28-29 0.0019851138895988106 30-31 0.0027128546667250235 32-33 0.001349658121577141 34-35 0.0010438574835212003 36-37 0.006506452316229018 38-39 0.0032502337741816753 40-41 8.29836557070766E-4 42-43 5.8781097527343737E-5 44-45 6.283689255824004E-4 46-47 0.0033492206534691932 48-49 2.3159650711597295E-4 50-51 0.0013755373538400838 52-53 0.0029282719437116076 54-55 0.0016925535697640244 56-57 1.1515175832236844E-4 58-59 0.0017825447374896044 60-61 3.265319329120849E-4 62-63 0.0012510647239088568 64-65 0.0032925873419022695 66-67 0.0042756338423292255 68-69 0.0018870475699821264 70-71 0.0016150002508874767 72-73 0.0011648749255399687 74-75 0.022716301314205333 76-77 0.008041570187534146 78-79 0.002376040505947964 80-81 0.005844272337312312 82-83 0.01119617946551965 84-85 0.004848694599176776 86-87 0.007290481625880163 88-89 0.009542872333744607 90-91 3.813881059436295E-4 92-93 1.9774845585646388E-5 94-95 4.361736896378724E-4 96-97 0.0034091821372052846 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 406.0 20-21 1251.0 22-23 2488.0 24-25 5832.0 26-27 9268.0 28-29 21494.0 30-31 46580.0 32-33 59408.0 34-35 83640.0 36-37 133728.0 38-39 174792.0 40-41 174103.0 42-43 183888.0 44-45 215912.0 46-47 219670.0 48-49 217545.0 50-51 197797.0 52-53 182151.0 54-55 191735.0 56-57 205369.0 58-59 211145.0 60-61 211639.0 62-63 194764.0 64-65 196308.0 66-67 208171.0 68-69 217327.0 70-71 218191.0 72-73 199216.0 74-75 197539.0 76-77 196477.0 78-79 213872.0 80-81 219506.0 82-83 204160.0 84-85 199622.0 86-87 208584.0 88-89 226558.0 90-91 242629.0 92-93 250780.0 94-95 279995.0 96-97 569655.0 98-99 3135948.0 100-101 5938750.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.36314825914151 #Duplication Level Percentage of deduplicated Percentage of total 1 88.72170807192387 72.18677487660214 2 7.289653735859929 11.862183553371525 3 1.99864435947455 4.878479920116742 4 0.8205566298064237 2.6705228290384624 5 0.4126505806867904 1.6787275187820083 6 0.23882236550192204 1.1658803719159059 7 0.1376304245482577 0.7838631246241937 8 0.09259780840798122 0.6027239371176126 9 0.05737645548662151 0.42014961489078184 >10 0.22054327300747184 2.8093056930642253 >50 0.006929027758670203 0.3855917393419608 >100 0.002755735190356784 0.3918197416315542 >500 1.644456800748916E-5 0.00830886713232394 >1k 1.1508777908851132E-4 0.15566821237050057 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.335387035499925E-5 0.0 0.0 0.0 3 0.0 1.120246444259991E-4 0.0 0.0 0.0 4 0.0 2.5516724563699793E-4 0.0 6.22359135699995E-6 0.0 5 0.0 2.6761442835099785E-4 0.0 6.22359135699995E-6 0.0 6 0.0 2.6761442835099785E-4 0.0 6.22359135699995E-6 0.0 7 1.24471827139999E-5 2.6761442835099785E-4 0.0 6.22359135699995E-6 0.0 8 1.24471827139999E-5 3.236267505639974E-4 0.0 6.22359135699995E-6 0.0 9 6.845950492699945E-5 6.970422319839944E-4 0.0 3.111795678499975E-5 6.22359135699995E-6 10-11 9.024207467649929E-5 6.970422319839944E-4 0.0 1.0580105306899916E-4 6.22359135699995E-6 12-13 1.120246444259991E-4 6.970422319839944E-4 0.0 1.4314260121099887E-4 6.22359135699995E-6 14-15 1.3069541849699894E-4 9.397622949069925E-4 0.0 1.4314260121099887E-4 6.22359135699995E-6 16-17 1.369190098539989E-4 9.771038430489922E-4 0.0 1.493661925679988E-4 6.22359135699995E-6 18-19 1.7114876231749863E-4 0.0011015756701889911 0.0 1.8048414935299857E-4 6.22359135699995E-6 20-21 2.3338467588749812E-4 0.0012571654541139899 0.0 2.0537851478099836E-4 6.22359135699995E-6 22-23 2.613908369939979E-4 0.0014189788293959887 0.0 2.240492888519982E-4 6.22359135699995E-6 24-25 2.6761442835099785E-4 0.0015465624522144877 0.0 2.4272006292299806E-4 6.22359135699995E-6 26-27 2.987323851359976E-4 0.0016119101614629871 0.0 3.454093203134972E-4 6.22359135699995E-6 28-29 3.1429136352849747E-4 0.0016119101614629871 0.0 9.055325424434928E-4 6.22359135699995E-6 30-31 3.3918572895649726E-4 0.0018577420200644851 0.0 0.00247387756440748 6.22359135699995E-6 32-33 3.4540932031349727E-4 0.0018919717725279848 0.0 0.005582561447228955 6.22359135699995E-6 34-35 3.547447073489972E-4 0.0022218221144489824 0.0 0.009459858862639925 6.22359135699995E-6 36-37 3.8586266413399693E-4 0.0025516724563699796 0.0 0.01615955495845037 6.22359135699995E-6 38-39 4.0764523388349676E-4 0.002626355552653979 0.0 0.02755806252879578 6.22359135699995E-6 40-41 4.387631906684965E-4 0.002869075615576977 0.0 0.040605821808746174 6.22359135699995E-6 42-43 4.636575560964963E-4 0.0029686530772889764 0.0 0.05258312337529258 6.22359135699995E-6 44-45 4.7921653448899617E-4 0.0033731865154939733 0.0 0.06541616875342648 6.22359135699995E-6 46-47 4.7921653448899617E-4 0.0036781424919869704 0.0 0.07882178453640437 6.22359135699995E-6 48-49 5.10334491273996E-4 0.0036812542876654706 0.0 0.09313293286182575 6.22359135699995E-6 50-51 5.694586091654955E-4 0.003976874877122968 0.0 0.10769302484152714 6.22359135699995E-6 52-53 5.819057918794953E-4 0.0040142164252649675 0.0 0.12149383867567452 6.22359135699995E-6 54-55 5.881293832364952E-4 0.0040546697690854675 0.0 0.13390679163721092 6.22359135699995E-6 56-57 5.974647702719953E-4 0.004144911843761967 0.0 0.14397967424851535 6.22359135699995E-6 58-59 6.036883616289952E-4 0.004154247230797467 0.0 0.15465935701712724 6.22359135699995E-6 60-61 6.099119529859951E-4 0.004225818531402966 0.0 0.16550396495669967 6.22359135699995E-6 62-63 6.410299097709949E-4 0.004306725219043966 0.0 0.17588802713585408 6.22359135699995E-6 64-65 6.721478665559946E-4 0.004757935592426462 0.0 0.185466134234277 6.22359135699995E-6 66-67 6.845950492699945E-4 0.004804612527603962 0.0 0.19480774486113395 6.22359135699995E-6 68-69 6.845950492699945E-4 0.00491974896770846 0.0 0.20411823753120586 6.22359135699995E-6 70-71 6.845950492699945E-4 0.00500065565534946 0.0 0.2122680304131973 6.22359135699995E-6 72-73 7.312719844474941E-4 0.00502555002077746 0.0 0.21873123003744177 6.22359135699995E-6 74-75 7.406073714829941E-4 0.005159357234952959 0.0 0.2234642712644402 6.22359135699995E-6 76-77 7.406073714829941E-4 0.005302499836163958 0.0 0.22776788468780568 6.22359135699995E-6 78-79 7.46830962839994E-4 0.005367847545412457 0.0 0.23097925782801765 6.22359135699995E-6 80-81 7.530545541969939E-4 0.005374071136769457 0.0 0.23209950427227766 6.22359135699995E-6 82-83 7.530545541969939E-4 0.005383406523804956 0.0 0.23291790653572314 6.22359135699995E-6 84-85 7.686135325894938E-4 0.005395853706518957 0.0 0.23321352712518062 6.22359135699995E-6 86-87 7.717253282679939E-4 0.005433195254660956 0.0 0.23332243997392815 6.22359135699995E-6 88 7.717253282679939E-4 0.005619902995370955 0.0 0.23332866356528514 6.22359135699995E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19805 0.0 49.26736 1 GTATCAA 37250 0.0 36.485394 1 TCAACGC 47930 0.0 27.880163 4 ATCAACG 48830 0.0 27.35811 3 CAACGCA 49130 0.0 27.191053 5 TATCAAC 49955 0.0 26.958046 2 AACGCAG 50145 0.0 26.847929 6 GTACATG 68995 0.0 24.42583 1 TACATGG 69535 0.0 23.908474 2 ACATGGG 71030 0.0 23.09011 3 ACGCAGA 59945 0.0 22.438742 7 CGCAGAG 61990 0.0 21.730745 8 CATGGGG 52370 0.0 20.715414 4 GCAGAGT 70480 0.0 18.982622 9 AGAGTAC 63860 0.0 17.207277 10-11 GAGTACT 35025 0.0 17.198933 12-13 CAGAGTA 68075 0.0 16.755468 10-11 GAGTACA 48735 0.0 16.551851 1 ATGGGGG 32450 0.0 16.481918 5 AGTACAT 48245 0.0 16.280832 2 >>END_MODULE