##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138685_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6476383 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.830601587336634 33.0 32.0 34.0 28.0 34.0 2 32.19996130556207 33.0 33.0 34.0 29.0 34.0 3 31.983403081627507 33.0 31.0 33.0 29.0 34.0 4 32.57547044391908 33.0 33.0 34.0 31.0 34.0 5 32.871051789247176 33.0 33.0 34.0 31.0 34.0 6 36.59701873715622 38.0 37.0 38.0 34.0 38.0 7 37.06292154123683 38.0 38.0 38.0 36.0 38.0 8 37.01317278487081 38.0 38.0 38.0 36.0 38.0 9 37.117130503245406 38.0 38.0 38.0 36.0 38.0 10-11 37.22251548433748 38.0 38.0 38.0 36.0 38.0 12-13 37.29860726272674 38.0 38.0 38.0 37.0 38.0 14-15 37.25977131062199 38.0 38.0 38.0 37.0 38.0 16-17 37.331574275332386 38.0 38.0 38.0 37.0 38.0 18-19 37.352866021049095 38.0 38.0 38.0 37.0 38.0 20-21 37.36637567362372 38.0 38.0 38.0 37.0 38.0 22-23 37.376361639310474 38.0 38.0 38.0 37.0 38.0 24-25 37.38859559702052 38.0 38.0 38.0 37.0 38.0 26-27 37.35904164513114 38.0 38.0 38.0 37.0 38.0 28-29 37.339326604883155 38.0 38.0 38.0 37.0 38.0 30-31 37.33560405976817 38.0 38.0 38.0 37.0 38.0 32-33 37.32033786759938 38.0 38.0 38.0 37.0 38.0 34-35 37.29934161159957 38.0 38.0 38.0 37.0 38.0 36-37 37.27848877273473 38.0 38.0 38.0 37.0 38.0 38-39 37.27704949610178 38.0 38.0 38.0 37.0 38.0 40-41 37.26385699093838 38.0 38.0 38.0 37.0 38.0 42-43 37.2164797722035 38.0 38.0 38.0 37.0 38.0 44-45 37.13191415087288 38.0 38.0 38.0 36.0 38.0 46-47 37.14976053857244 38.0 38.0 38.0 36.0 38.0 48-49 37.104924264515255 38.0 38.0 38.0 36.0 38.0 50-51 37.06240715687663 38.0 38.0 38.0 36.0 38.0 52-53 37.03894849114913 38.0 38.0 38.0 36.0 38.0 54-55 37.0075916345944 38.0 38.0 38.0 36.0 38.0 56-57 36.959990148750265 38.0 38.0 38.0 36.0 38.0 58-59 36.944452811779826 38.0 38.0 38.0 36.0 38.0 60-61 36.95109550472509 38.0 38.0 38.0 36.0 38.0 62-63 36.95470323856006 38.0 38.0 38.0 36.0 38.0 64-65 36.916949694370565 38.0 38.0 38.0 36.0 38.0 66-67 36.939339427876945 38.0 38.0 38.0 36.0 38.0 68-69 36.921945842229974 38.0 38.0 38.0 36.0 38.0 70-71 36.92184630435992 38.0 38.0 38.0 35.5 38.0 72-73 36.90288069523337 38.0 38.0 38.0 35.0 38.0 74-75 36.89448539937393 38.0 38.0 38.0 35.0 38.0 76-77 36.87769316290114 38.0 38.0 38.0 35.0 38.0 78-79 36.85718731650396 38.0 38.0 38.0 35.0 38.0 80-81 36.81745544225585 38.0 38.0 38.0 35.0 38.0 82-83 36.778915599129974 38.0 38.0 38.0 35.0 38.0 84-85 36.754941297701635 38.0 38.0 38.0 35.0 38.0 86-87 36.743150480360164 38.0 38.0 38.0 35.0 38.0 88-89 36.72291998625535 38.0 38.0 38.0 34.5 38.0 90-91 36.69608065037116 38.0 38.0 38.0 34.0 38.0 92-93 36.66879849728201 38.0 38.0 38.0 34.0 38.0 94-95 36.6372292942103 38.0 38.0 38.0 34.0 38.0 96-97 36.63299891119858 38.0 38.0 38.0 34.0 38.0 98-99 36.637384879017866 38.0 38.0 38.0 34.0 38.0 100 35.16371875942521 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 19.0 21 88.0 22 337.0 23 1166.0 24 2923.0 25 6248.0 26 11315.0 27 18794.0 28 29059.0 29 42277.0 30 57553.0 31 75822.0 32 98058.0 33 131345.0 34 191976.0 35 329472.0 36 850463.0 37 4629463.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.164909024064826 19.318066890114434 13.442148186727065 25.074875899093673 2 14.15488584204137 20.80406077512715 42.95619562206367 22.08485776076781 3 17.958431976144137 26.544803549226494 30.544631844339023 24.952132630290347 4 12.149960865501622 17.822278268595294 40.2094193626288 29.818341503274283 5 13.059048546078882 37.57217570362963 35.954976720802335 13.413799029489146 6 28.972666977747625 38.360667179095856 19.455241863385226 13.211423979771297 7 25.850293288707597 33.061339948548444 24.03103707733159 17.057329685412366 8 23.878868806863338 37.02620737532045 21.720148422352416 17.374775395463796 9 25.88177691158784 16.794513233698503 21.580981235976935 35.74272861873673 10-11 23.80501953096652 26.707033340528707 29.52053322364246 19.967413904862312 12-13 24.862064210841144 24.5820313591707 29.52999382525709 21.025910604731067 14-15 22.08664929174201 25.707211880458587 27.229628019219987 24.97651080857942 16-17 21.36909599077139 28.81607681324591 27.882940215240517 21.93188698074218 18-19 21.40897936394435 27.970851940041225 29.753058149896322 20.867110546118102 20-21 22.307516875355525 27.158143188989776 29.50034958189141 21.033990353763286 22-23 22.09053394745083 27.041655523073572 29.325302019682315 21.542508509793286 24-25 21.76958755205112 27.228096834195416 29.408479979862882 21.593835633890578 26-27 21.690291701481286 27.312004905193543 29.386426081544208 21.61127731178096 28-29 21.658960971363335 27.369399916741255 29.42647332943124 21.54516578246417 30-31 21.829336460528452 27.23363780235775 29.364591056889005 21.572434680224788 32-33 21.638135501032497 27.33524150612075 29.325232974043953 21.7013900188028 34-35 21.80433500342696 27.381347728811722 29.31796962168134 21.49634764607998 36-37 21.827973952684022 27.301495974625524 29.201431240792626 21.66909883189783 38-39 21.673278861325723 27.452191365836715 29.31486389619358 21.559665876643987 40-41 21.84139599263442 27.294113300620943 29.23543213562439 21.629058571120247 42-43 21.775665299242736 27.417407327041506 29.034829543698436 21.772097830017323 44-45 21.84712215037102 27.515633254709993 28.899994411118445 21.737250183800537 46-47 21.845474794195706 27.542748195349127 28.699431273784796 21.912345736670375 48-49 21.826451461236022 27.68771201301272 28.563484098957794 21.922352426793463 50-51 21.84864832675203 27.73975149189746 28.501673675683964 21.909926505666547 52-53 21.968567817228877 27.699230715338974 28.356204873393665 21.975996594038488 54-55 21.988155204529317 27.639279644415442 28.367870624559565 22.004694526495676 56-57 21.937859091643997 27.721902326819816 28.359256654415216 21.980981927120975 58-59 21.907428026302224 27.70605873809356 28.423060902193104 21.963452333411116 60-61 21.97405832521199 27.676237135862607 28.473403005056998 21.876301533868403 62-63 21.942103032229085 27.689308164436337 28.40151770483759 21.967071098496984 64-65 21.912080433404245 27.635728222160594 28.435596306789268 22.016595037645892 66-67 21.95559630786004 27.607354056986456 28.342546147336055 22.094503487817445 68-69 21.908063051763346 27.58328713243533 28.47057623317606 22.038073582625266 70-71 21.94335045712253 27.414473652786942 28.482914827420664 22.15926106266986 72-73 22.03316998902286 27.510812094247676 28.400274451222764 22.0557434655067 74-75 21.901369583876093 27.619567554226755 28.359918204922085 22.119144656975067 76-77 22.006329633073946 27.6049866041748 28.268855851334163 22.119827911417094 78-79 21.983735415553717 27.561909625192254 28.252980273864704 22.20137468538932 80-81 22.032225485505617 27.668023872151227 28.18192689365024 22.11782374869292 82-83 22.026418975597057 27.66581386402816 28.248694201015734 22.059072959359053 84-85 22.12353389371454 27.657267569628942 28.13902462283615 22.080173913820364 86-87 22.013336580860383 27.697889310225648 28.2016027370294 22.08717137188457 88-89 22.131611990365833 27.603231994318033 28.12872038985294 22.136435625463196 90-91 22.130857378090933 27.70420774300898 28.100718464730416 22.064216414169675 92-93 22.127129456581503 27.64738296829283 28.15917758174859 22.066309993377075 94-95 21.980471656099326 27.76041867780807 28.127673048259673 22.131436617832936 96-97 22.116228752341648 27.846820164482594 28.139077257718515 21.897873825457243 98-99 23.203918171834072 29.781577920373774 28.364581166177828 18.64992274161433 100 29.391061195487143 40.90620670793737 29.702732096575485 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1327.0 1 1264.0 2 1788.5 3 2542.0 4 3179.0 5 4547.0 6 5781.5 7 7172.0 8 8881.5 9 9486.0 10 8954.0 11 8498.0 12 9108.5 13 11281.5 14 15524.0 15 20398.5 16 24298.0 17 26604.0 18 26493.0 19 24700.5 20 22954.5 21 22132.5 22 23571.0 23 27948.5 24 35082.5 25 45143.5 26 57558.5 27 71632.0 28 86322.5 29 102095.0 30 117606.0 31 133028.0 32 150186.5 33 166956.5 34 181028.0 35 194939.0 36 210829.0 37 224917.0 38 235454.0 39 241394.0 40 247474.5 41 254538.0 42 259377.0 43 263755.0 44 266696.5 45 268254.5 46 268598.0 47 268403.5 48 266791.0 49 262237.5 50 256143.5 51 247694.0 52 236143.0 53 222762.5 54 208533.0 55 192665.0 56 174690.0 57 156919.0 58 139729.0 59 120327.0 60 100172.5 61 81269.0 62 63759.5 63 49094.5 64 37284.5 65 27727.0 66 19941.0 67 14563.0 68 10811.0 69 7777.0 70 5601.5 71 3978.5 72 2763.0 73 1898.0 74 1256.0 75 780.0 76 491.0 77 326.0 78 207.5 79 129.5 80 85.5 81 56.5 82 39.5 83 29.5 84 20.0 85 14.0 86 7.5 87 3.0 88 2.0 89 1.5 90 2.0 91 1.0 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002794769858422518 3 0.0023933112047264653 4 0.0 5 0.0 6 6.330694154437748E-4 7 0.0 8 0.0 9 0.0 10-11 1.5440717449848162E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 2.1618009160476965E-4 24-25 0.001189063947241387 26-27 0.003081095594349904 28-29 0.0019929789976319856 30-31 0.0025207039877769054 32-33 0.0033005310136023716 34-35 9.632523126794689E-4 36-37 0.0 38-39 4.7060931120915295E-5 40-41 1.5788340247573804E-5 42-43 5.72063062007266E-4 44-45 0.0 46-47 0.0 48-49 2.2831569635349663E-4 50-51 0.0061356666632122695 52-53 0.0 54-55 0.002925009280636589 56-57 0.04693824476423185 58-59 0.05833134740733071 60-61 0.037811793793043336 62-63 0.008657042300267129 64-65 0.0 66-67 0.0 68-69 6.331496842544948E-4 70-71 0.002658482984897834 72-73 0.009997256672645293 74-75 0.004808972089112184 76-77 0.004050028252662685 78-79 0.003746594261306827 80-81 0.016030482227864757 82-83 0.05348815989780679 84-85 0.03477299891196044 86-87 0.009645480984223702 88-89 0.008237216757595285 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 39.0 20-21 181.0 22-23 370.0 24-25 561.0 26-27 1623.0 28-29 4284.0 30-31 12289.0 32-33 15709.0 34-35 21721.0 36-37 34580.0 38-39 41258.0 40-41 40136.0 42-43 45799.0 44-45 55326.0 46-47 56913.0 48-49 53604.0 50-51 49939.0 52-53 46890.0 54-55 50490.0 56-57 54241.0 58-59 54566.0 60-61 53378.0 62-63 50610.0 64-65 53250.0 66-67 57065.0 68-69 58812.0 70-71 57511.0 72-73 54142.0 74-75 54334.0 76-77 57117.0 78-79 59704.0 80-81 59841.0 82-83 56042.0 84-85 54478.0 86-87 56625.0 88-89 60223.0 90-91 60664.0 92-93 60325.0 94-95 68173.0 96-97 199506.0 98-99 1474160.0 100-101 3129904.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.18824089847517 #Duplication Level Percentage of deduplicated Percentage of total 1 90.67261747494543 79.05586015300833 2 6.783978359882181 11.829662789829003 3 1.5227057354087863 3.982861034289332 4 0.5129858943366105 1.789053509317605 5 0.20668652630433643 0.9010317322945756 6 0.1102964560987299 0.5769932390750493 7 0.0593820466504352 0.36241913318818453 8 0.03543855489351165 0.24718602089194644 9 0.025066548220016277 0.1966957420230021 >10 0.06939851275480544 0.8875569567490131 >50 9.138536811165319E-4 0.05185559345496967 >100 4.5252330340317447E-4 0.07505306644211054 >500 7.751352068178561E-5 0.0437710294368225 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.5440717449848162E-5 0.0 0.0 0.0 3 0.0 1.5440717449848162E-5 0.0 0.0 0.0 4 0.0 3.0881434899696325E-5 0.0 0.0 0.0 5 0.0 3.0881434899696325E-5 0.0 0.0 0.0 6 0.0 3.0881434899696325E-5 0.0 0.0 1.5440717449848162E-5 7 0.0 3.0881434899696325E-5 0.0 0.0 1.5440717449848162E-5 8 0.0 3.0881434899696325E-5 0.0 0.0 3.0881434899696325E-5 9 0.0 6.176286979939265E-5 0.0 1.5440717449848162E-5 3.0881434899696325E-5 10-11 1.5440717449848162E-5 6.176286979939265E-5 0.0 1.5440717449848162E-5 3.0881434899696325E-5 12-13 1.5440717449848162E-5 6.176286979939265E-5 0.0 1.5440717449848162E-5 3.0881434899696325E-5 14-15 2.3161076174772244E-5 1.0036466342401308E-4 0.0 1.5440717449848162E-5 3.860179362462041E-5 16-17 6.176286979939265E-5 1.0808502214893715E-4 0.0 1.5440717449848162E-5 4.6322152349544494E-5 18-19 6.176286979939265E-5 1.1580538087386122E-4 0.0 3.860179362462041E-5 4.6322152349544494E-5 20-21 6.176286979939265E-5 1.235257395987853E-4 0.0 4.6322152349544494E-5 4.6322152349544494E-5 22-23 8.49239459741649E-5 1.235257395987853E-4 0.0 4.6322152349544494E-5 4.6322152349544494E-5 24-25 1.0808502214893715E-4 1.3124609832370937E-4 0.0 4.6322152349544494E-5 4.6322152349544494E-5 26-27 1.1580538087386122E-4 1.3896645704863347E-4 0.0 8.49239459741649E-5 4.6322152349544494E-5 28-29 1.235257395987853E-4 1.3896645704863347E-4 0.0 4.400604473206726E-4 4.6322152349544494E-5 30-31 1.235257395987853E-4 2.0072932684802612E-4 0.0 0.0013510627768617144 4.6322152349544494E-5 32-33 1.235257395987853E-4 2.0072932684802612E-4 0.0 0.0031807877946687215 4.6322152349544494E-5 34-35 1.3124609832370937E-4 2.5477183792249467E-4 0.0 0.005234403215498527 4.6322152349544494E-5 36-37 1.3896645704863347E-4 3.0881434899696325E-4 0.0 0.008222182042044147 4.6322152349544494E-5 38-39 1.3896645704863347E-4 3.2425506644681145E-4 0.0 0.013425703822642979 4.6322152349544494E-5 40-41 1.5440717449848162E-4 3.5513650134650775E-4 0.0 0.01847481842874333 4.6322152349544494E-5 42-43 1.5440717449848162E-4 3.8601793624620405E-4 0.0 0.023778704872766173 4.6322152349544494E-5 44-45 1.6212753322340573E-4 4.4778080604559675E-4 0.0 0.029800584678206954 4.6322152349544494E-5 46-47 1.8528860939817795E-4 4.786622409452931E-4 0.0 0.03609267703902008 4.6322152349544494E-5 48-49 2.0072932684802612E-4 4.863825996702172E-4 0.0 0.04287887235822835 6.176286979939265E-5 50-51 2.3161076174772245E-4 5.481454694696098E-4 0.0 0.049626465883812 6.176286979939265E-5 52-53 2.3161076174772245E-4 5.71306545644382E-4 0.0 0.05679867913926647 7.720358724924083E-5 54-55 2.3161076174772245E-4 5.71306545644382E-4 0.0 0.0634459080014261 9.264430469908899E-5 56-57 2.3161076174772245E-4 5.71306545644382E-4 0.0 0.07006997578741096 9.264430469908899E-5 58-59 2.3161076174772245E-4 5.71306545644382E-4 0.0 0.07687933218279401 1.1580538087386122E-4 60-61 2.3161076174772245E-4 5.71306545644382E-4 0.0 0.08406698615569833 1.235257395987853E-4 62-63 2.3161076174772245E-4 6.176286979939265E-4 0.0 0.09092266470343091 1.235257395987853E-4 64-65 2.3161076174772245E-4 7.874765899422563E-4 0.0 0.09785554683841274 1.235257395987853E-4 66-67 2.3161076174772245E-4 7.951969486671804E-4 0.0 0.10453365713547208 1.235257395987853E-4 68-69 2.3161076174772245E-4 8.337987422918009E-4 0.0 0.11101103810568337 1.3124609832370937E-4 70-71 2.3161076174772245E-4 8.49239459741649E-4 0.0 0.11678586643192658 1.3896645704863347E-4 72-73 2.470514791975706E-4 8.569598184665732E-4 0.0 0.12152616668902996 1.698478919483298E-4 74-75 2.470514791975706E-4 8.646801771914972E-4 0.0 0.12499260775652088 1.698478919483298E-4 76-77 2.547718379224947E-4 8.724005359164212E-4 0.0 0.1284976506176364 1.698478919483298E-4 78-79 3.0881434899696325E-4 8.801208946413454E-4 0.0 0.1307056732129647 1.698478919483298E-4 80-81 3.0881434899696325E-4 8.801208946413454E-4 0.0 0.13167071805358022 1.7756825067325387E-4 82-83 3.165347077218873E-4 8.801208946413454E-4 0.0 0.1322420245992246 2.470514791975706E-4 84-85 3.2425506644681145E-4 8.801208946413454E-4 0.0 0.13248907607842217 2.470514791975706E-4 86-87 3.2425506644681145E-4 8.801208946413454E-4 0.0 0.1325894407418462 2.547718379224947E-4 88 3.2425506644681145E-4 9.110023295410416E-4 0.0 0.13260488145929603 2.624921966474188E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8365 0.0 47.980095 1 GTATCAA 16040 0.0 38.48527 1 TCAACGC 18105 0.0 32.92358 4 ATCAACG 18170 0.0 32.8058 3 CAACGCA 18470 0.0 32.22701 5 TATCAAC 19265 0.0 31.271973 2 AACGCAG 19080 0.0 31.19669 6 ACGCAGA 21750 0.0 27.386324 7 CGCAGAG 22140 0.0 26.75061 8 GTACATG 21165 0.0 23.353048 1 TACATGG 21145 0.0 22.85346 2 GCAGAGT 26210 0.0 22.59666 9 ACATGGG 21070 0.0 22.249844 3 GAGTACT 15230 0.0 19.847578 12-13 GTGGTAT 4380 0.0 19.372774 1 CAGAGTA 25835 0.0 19.221495 10-11 CATGGGG 14755 0.0 19.207308 4 TGGTATC 4135 0.0 19.084173 2 AGAGTAC 24235 0.0 18.486092 10-11 GTACTTT 17325 0.0 17.46012 14-15 >>END_MODULE