##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138683_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6797178 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.850428221829706 33.0 32.0 34.0 28.0 34.0 2 32.20714302317815 33.0 33.0 34.0 29.0 34.0 3 31.999178041240057 33.0 31.0 33.0 29.0 34.0 4 32.57087544272049 33.0 33.0 34.0 31.0 34.0 5 32.873461162853175 33.0 33.0 34.0 31.0 34.0 6 36.5989019266525 38.0 37.0 38.0 34.0 38.0 7 37.07265029693205 38.0 38.0 38.0 36.0 38.0 8 37.01907674037667 38.0 38.0 38.0 36.0 38.0 9 37.129614672442 38.0 38.0 38.0 36.0 38.0 10-11 37.23263227768936 38.0 38.0 38.0 36.0 38.0 12-13 37.30782546815752 38.0 38.0 38.0 37.0 38.0 14-15 37.26807272076736 38.0 38.0 38.0 37.0 38.0 16-17 37.338040360278924 38.0 38.0 38.0 37.0 38.0 18-19 37.35689774491708 38.0 38.0 38.0 37.0 38.0 20-21 37.370226839671204 38.0 38.0 38.0 37.0 38.0 22-23 37.3818909835919 38.0 38.0 38.0 37.0 38.0 24-25 37.39408309420904 38.0 38.0 38.0 37.0 38.0 26-27 37.36247768586091 38.0 38.0 38.0 37.0 38.0 28-29 37.34593824663959 38.0 38.0 38.0 37.0 38.0 30-31 37.34078296983881 38.0 38.0 38.0 37.0 38.0 32-33 37.3270817065088 38.0 38.0 38.0 37.0 38.0 34-35 37.30522258355068 38.0 38.0 38.0 37.0 38.0 36-37 37.28357994804057 38.0 38.0 38.0 37.0 38.0 38-39 37.28118299613034 38.0 38.0 38.0 37.0 38.0 40-41 37.27134347647207 38.0 38.0 38.0 37.0 38.0 42-43 37.23065149253293 38.0 38.0 38.0 37.0 38.0 44-45 37.146036107338006 38.0 38.0 38.0 36.0 38.0 46-47 37.17368586182575 38.0 38.0 38.0 37.0 38.0 48-49 37.132490463491955 38.0 38.0 38.0 36.0 38.0 50-51 37.092442315291365 38.0 38.0 38.0 36.0 38.0 52-53 37.07159463188371 38.0 38.0 38.0 36.0 38.0 54-55 37.041667906270035 38.0 38.0 38.0 36.0 38.0 56-57 36.99602211807881 38.0 38.0 38.0 36.0 38.0 58-59 36.981230643333696 38.0 38.0 38.0 36.0 38.0 60-61 36.98532444734765 38.0 38.0 38.0 36.0 38.0 62-63 36.98881923326765 38.0 38.0 38.0 36.0 38.0 64-65 36.95139685746045 38.0 38.0 38.0 36.0 38.0 66-67 36.97232545261686 38.0 38.0 38.0 36.0 38.0 68-69 36.95410715706395 38.0 38.0 38.0 36.0 38.0 70-71 36.95612757847418 38.0 38.0 38.0 36.0 38.0 72-73 36.93603180360975 38.0 38.0 38.0 36.0 38.0 74-75 36.926902890893324 38.0 38.0 38.0 35.5 38.0 76-77 36.9104837517977 38.0 38.0 38.0 35.0 38.0 78-79 36.88730180154542 38.0 38.0 38.0 35.0 38.0 80-81 36.84895520788412 38.0 38.0 38.0 35.0 38.0 82-83 36.81235688771825 38.0 38.0 38.0 35.0 38.0 84-85 36.787497785977735 38.0 38.0 38.0 35.0 38.0 86-87 36.77569851305347 38.0 38.0 38.0 35.0 38.0 88-89 36.7560399553588 38.0 38.0 38.0 35.0 38.0 90-91 36.73039253703598 38.0 38.0 38.0 35.0 38.0 92-93 36.70127874291851 38.0 38.0 38.0 34.0 38.0 94-95 36.6714570928487 38.0 38.0 38.0 34.0 38.0 96-97 36.671734878448405 38.0 38.0 38.0 34.0 38.0 98-99 36.677449974859485 38.0 38.0 38.0 34.0 38.0 100 35.230836989000444 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 4.0 20 19.0 21 84.0 22 357.0 23 1210.0 24 2923.0 25 6423.0 26 11377.0 27 19376.0 28 29718.0 29 43328.0 30 58491.0 31 76632.0 32 100755.0 33 134639.0 34 196899.0 35 337161.0 36 873684.0 37 4904097.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.971374002564005 19.07752011202296 13.361824568960825 25.58928131645221 2 14.23103518285847 20.389874445716234 43.17268054129285 22.20640983013244 3 18.257007759745804 25.825992963661477 30.27105630851018 25.64594296808254 4 12.247716956613019 17.45642345344251 40.012934781601246 30.282924808343225 5 13.33606387827419 36.97235823454969 36.085960967919334 13.605616919256786 6 29.585495696361196 38.07419427687025 19.176273014224336 13.164037012544219 7 26.073938331466383 32.46467872402341 24.12293748964644 17.33844545486377 8 23.62779082731098 37.39769651464181 21.720102077656346 17.25441058039086 9 25.56384428949779 16.758984390286674 21.732695539237017 35.94447578097852 10-11 24.050813738496604 26.546776217040087 29.533699833497067 19.868710210966242 12-13 24.812488359139632 24.238882665718037 29.604925750068634 21.3437032250737 14-15 22.023978186241408 25.4571897337395 27.09088242208752 25.42794965793157 16-17 21.644548664166216 28.479863260900334 27.827055581007293 22.048532493926157 18-19 21.661195278393475 27.781573470637372 29.448375487592056 21.108855763377097 20-21 22.357050885200522 27.019808730306316 29.26268304854538 21.36045733594778 22-23 22.172248441292517 26.958020184944676 29.096061842921717 21.773669530841094 24-25 21.925989553825783 27.01433003463053 29.203999523575476 21.855680887968212 26-27 21.869783450662776 27.1477026581593 29.14455212723377 21.837961763944154 28-29 21.847046235179732 27.21003299521693 29.170890760463468 21.772030009139865 30-31 22.074006111612725 27.091948643360748 29.062761810773356 21.77128343425317 32-33 21.87426299454081 27.210890929833393 29.061510715450584 21.853335360175212 34-35 22.001927462044307 27.17720003224764 29.066438270550286 21.754434235157767 36-37 22.005926415223872 27.1428852401831 29.021043041657467 21.83014530293556 38-39 21.869106248913997 27.295182742235102 29.07953051356672 21.756180495284177 40-41 22.058443794597018 27.11079199898723 28.988396473834378 21.842367732581373 42-43 21.97001224798682 27.248143458084144 28.792476829790726 21.98936746413831 44-45 22.040371196329936 27.379750459084924 28.641563182840844 21.938315161744296 46-47 22.068179828901247 27.29242637616862 28.536049338394548 22.103344456535584 48-49 22.029490443186734 27.460603394819483 28.430548506105218 22.07935765588856 50-51 22.003822735521616 27.526352597331567 28.374656441539976 22.09516822560684 52-53 22.15467520473805 27.449733627431293 28.26960417179143 22.12598699603922 54-55 22.124666361883687 27.336858661755976 28.301851876894563 22.236623099465774 56-57 22.136789828546828 27.43383933299498 28.303701589381298 22.12566924907689 58-59 22.112678471087122 27.469742992619476 28.318833167480317 22.09874536881308 60-61 22.17179870909744 27.4304615070836 28.37350109740358 22.024238686415384 62-63 22.1342117837863 27.477687482948948 28.348277667897783 22.03982306536697 64-65 22.088668528643396 27.3810413466678 28.304438232350286 22.225851892338515 66-67 22.109249222277455 27.369090733908035 28.21600899894414 22.305651044870363 68-69 22.037917524627616 27.35867004968457 28.381614857891364 22.221797567796454 70-71 22.063139218348844 27.182805868996734 28.42966785418262 22.3243870584718 72-73 22.198482420908654 27.314172349181703 28.310215741089383 22.177129488820256 74-75 22.061378710151907 27.426955628573875 28.294693323780585 22.216972337493633 76-77 22.210578196845844 27.392759577926572 28.108428953976244 22.28823327125134 78-79 22.100523893941396 27.393949411632462 28.13684188054743 22.368684813878712 80-81 22.131892063881086 27.49108433096024 28.111051631514584 22.26597197364409 82-83 22.194542431527626 27.46246150478685 28.175442862558047 22.167553201127475 84-85 22.27749098258988 27.4743625974279 28.04346116583823 22.204685254143993 86-87 22.13046587343673 27.51290069289918 28.115874949046088 22.240758484618002 88-89 22.240324017669437 27.489213831551034 28.00017772331753 22.270284427461995 90-91 22.286574270171013 27.522772178826738 27.97878840224421 22.211865148758044 92-93 22.276781693770754 27.515966405877247 28.015356108814913 22.191895791537085 94-95 22.156588448397603 27.596586461729427 28.039561082140484 22.207264007732487 96-97 22.265790564138992 27.6619507093668 28.062027664318556 22.010231062175656 98-99 23.323910643867173 29.629365911356974 28.256261569304808 18.790461875471046 100 29.71665464858568 40.68781607753954 29.59552927387478 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 972.0 1 964.0 2 1592.0 3 2391.5 4 3017.0 5 4372.0 6 5631.0 7 6850.0 8 8086.5 9 8391.0 10 7838.0 11 7480.5 12 8208.0 13 10242.0 14 14320.0 15 18988.5 16 22393.5 17 24394.5 18 24646.5 19 23257.0 20 21576.5 21 21104.0 22 22843.5 23 26992.5 24 33993.5 25 44100.0 26 56792.0 27 70928.5 28 85544.5 29 101723.0 30 117508.0 31 132756.5 32 150304.0 33 167785.0 34 183214.5 35 198307.0 36 214207.5 37 229001.0 38 239521.5 39 246449.0 40 255017.0 41 263694.0 42 269050.0 43 273816.5 44 278843.0 45 282042.5 46 282851.0 47 282987.0 48 281772.0 49 279049.0 50 274536.5 51 266781.0 52 254831.5 53 240525.0 54 225474.0 55 209027.5 56 190345.5 57 170871.0 58 151228.5 59 128633.5 60 106027.0 61 85686.0 62 67825.0 63 52370.5 64 39086.5 65 29176.5 66 21837.0 67 16491.5 68 12406.5 69 9024.5 70 6378.5 71 4452.0 72 3135.5 73 2064.5 74 1344.0 75 891.0 76 568.5 77 366.0 78 229.0 79 133.5 80 84.0 81 58.5 82 42.5 83 31.0 84 21.5 85 16.5 86 16.0 87 13.5 88 9.5 89 7.0 90 4.5 91 2.5 92 1.5 93 1.5 94 1.5 95 1.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0017360145636909907 3 0.002604021845536486 4 1.471198782788975E-5 5 0.0 6 3.383757200414643E-4 7 0.0 8 0.0 9 0.0 10-11 7.355993913944875E-6 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 2.059759053799656E-4 24-25 9.78441044733736E-4 26-27 0.0029208880058700284 28-29 0.0017883466036501404 30-31 0.002268637631542313 32-33 0.0030549280490653912 34-35 7.470153961352382E-4 36-37 0.0 38-39 2.9842949241395963E-5 40-41 7.504203854999571E-6 42-43 5.208669883863269E-4 44-45 0.0 46-47 0.0 48-49 2.0095240620024736E-4 50-51 0.005773038259661912 52-53 0.0 54-55 0.0029971273443822684 56-57 0.04361767378573021 58-59 0.054583765203408796 60-61 0.034446407914946915 62-63 0.008097057935227303 64-65 0.0 66-67 0.0 68-69 4.63002131072536E-4 70-71 0.0024495371948189226 72-73 0.009734614476187954 74-75 0.0048842942784700135 76-77 0.003724430361521254 78-79 0.003383675396047247 80-81 0.015297531616092859 82-83 0.04963227653680988 84-85 0.03295448638588944 86-87 0.00947072606895965 88-89 0.008099785617567967 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 47.0 20-21 151.0 22-23 356.0 24-25 530.0 26-27 1379.0 28-29 3756.0 30-31 11735.0 32-33 14553.0 34-35 20408.0 36-37 32819.0 38-39 38966.0 40-41 38820.0 42-43 43156.0 44-45 52796.0 46-47 55224.0 48-49 52408.0 50-51 48491.0 52-53 46394.0 54-55 51090.0 56-57 55152.0 58-59 55054.0 60-61 53816.0 62-63 51657.0 64-65 54850.0 66-67 58952.0 68-69 60687.0 70-71 60415.0 72-73 56208.0 74-75 57005.0 76-77 60051.0 78-79 61984.0 80-81 61839.0 82-83 58588.0 84-85 57020.0 86-87 59468.0 88-89 62721.0 90-91 64171.0 92-93 63439.0 94-95 71737.0 96-97 211925.0 98-99 1570136.0 100-101 3317224.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.33507798618864 #Duplication Level Percentage of deduplicated Percentage of total 1 89.84382005936341 76.66829391342877 2 7.0702266317638855 12.06676682003198 3 1.7445249312956577 4.466075131828959 4 0.6185354011630951 2.111310667818848 5 0.2775695442938172 1.1843209354451867 6 0.15538066037694298 0.7955652462487152 7 0.0948586025476821 0.5666336372247126 8 0.05324138501918416 0.3634686194163821 9 0.03427286677904395 0.2632209983459972 >10 0.10570007678228012 1.341723221627806 >50 0.0014531493104063984 0.08235839979033108 >100 3.6247404806522E-4 0.05924083049766168 >500 5.421725647610671E-5 0.03102157829464727 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.471198782788975E-5 0.0 0.0 0.0 3 0.0 2.94239756557795E-5 0.0 0.0 0.0 4 0.0 2.94239756557795E-5 0.0 0.0 2.94239756557795E-5 5 0.0 4.4135963483669255E-5 0.0 0.0 2.94239756557795E-5 6 0.0 4.4135963483669255E-5 0.0 0.0 4.4135963483669255E-5 7 1.471198782788975E-5 4.4135963483669255E-5 0.0 0.0 4.4135963483669255E-5 8 1.471198782788975E-5 5.8847951311559E-5 0.0 0.0 4.4135963483669255E-5 9 1.471198782788975E-5 1.3240789045100776E-4 0.0 0.0 4.4135963483669255E-5 10-11 1.471198782788975E-5 1.471198782788975E-4 0.0 0.0 4.4135963483669255E-5 12-13 1.471198782788975E-5 1.471198782788975E-4 0.0 0.0 5.149195739761413E-5 14-15 1.471198782788975E-5 2.1332382350440138E-4 0.0 0.0 1.3240789045100776E-4 16-17 1.471198782788975E-5 2.35391805246236E-4 0.0 0.0 1.9125584176256675E-4 18-19 1.471198782788975E-5 2.5745978698807066E-4 0.0 7.355993913944875E-6 1.9125584176256675E-4 20-21 1.471198782788975E-5 2.94239756557795E-4 0.0 3.6779969569724374E-5 1.9125584176256675E-4 22-23 1.471198782788975E-5 3.236637322135745E-4 0.0 5.8847951311559E-5 2.059678295904565E-4 24-25 1.471198782788975E-5 3.604437017832989E-4 0.0 6.620394522550388E-5 2.2067981741834627E-4 26-27 1.471198782788975E-5 3.825116835251335E-4 0.0 1.1033990870917314E-4 2.2067981741834627E-4 28-29 1.471198782788975E-5 3.8986767743907837E-4 0.0 3.6779969569724377E-4 2.2067981741834627E-4 30-31 1.471198782788975E-5 4.6342761657852715E-4 0.0 0.0012799429410264083 2.2067981741834627E-4 32-33 1.471198782788975E-5 4.8549559832036175E-4 0.0 0.003597081023919044 2.2067981741834627E-4 34-35 1.471198782788975E-5 5.590555374598105E-4 0.0 0.006598326540808553 2.6481578090201553E-4 36-37 1.471198782788975E-5 6.546834583410939E-4 0.0 0.01129880665181933 2.6481578090201553E-4 38-39 1.471198782788975E-5 7.061754157387081E-4 0.0 0.018294356863980905 2.6481578090201553E-4 40-41 1.471198782788975E-5 7.429553853084324E-4 0.0 0.025760690686634953 2.721717748159604E-4 42-43 1.471198782788975E-5 8.018033366199915E-4 0.0 0.0332417364971169 2.8688376264385013E-4 44-45 1.471198782788975E-5 8.753632757594401E-4 0.0 0.041127361972865796 3.089517443856848E-4 46-47 1.471198782788975E-5 9.121432453291646E-4 0.0 0.05097703782363799 3.1630773829962965E-4 48-49 1.471198782788975E-5 9.268552331570543E-4 0.0 0.06127542930316081 3.236637322135745E-4 50-51 1.471198782788975E-5 0.001000415172296503 0.0 0.07150026084354419 3.236637322135745E-4 52-53 1.471198782788975E-5 0.001000415172296503 0.0 0.08097478100470519 3.4573171395540917E-4 54-55 1.471198782788975E-5 0.0010298391479522826 0.0 0.08933119009094656 3.6779969569724377E-4 56-57 1.471198782788975E-5 0.0010739751114359518 0.0 0.09531161314298375 3.6779969569724377E-4 58-59 1.471198782788975E-5 0.0010886870992638416 0.0 0.10199821161075964 3.6779969569724377E-4 60-61 1.471198782788975E-5 0.001184315020145125 0.0 0.1085303342063427 3.6779969569724377E-4 62-63 1.471198782788975E-5 0.0012137389958009046 0.0 0.11456960520969144 3.972236713530233E-4 64-65 1.471198782788975E-5 0.0012652309531985186 0.0 0.12088104798785614 3.972236713530233E-4 66-67 1.471198782788975E-5 0.0012799429410264083 0.0 0.12725869471124635 4.0457966526696816E-4 68-69 1.471198782788975E-5 0.001302010922768243 0.0 0.1332023377937138 4.11935659180913E-4 70-71 1.471198782788975E-5 0.0013240789045100775 0.0 0.13855750136306566 4.2664764700880276E-4 72-73 1.471198782788975E-5 0.0013387908923379673 0.0 0.14268421394878875 4.8549559832036175E-4 74-75 1.471198782788975E-5 0.0013829268558216367 0.0 0.14603119117963367 4.8549559832036175E-4 76-77 1.471198782788975E-5 0.0014491308010471404 0.0 0.14986366400879894 4.8549559832036175E-4 78-79 1.471198782788975E-5 0.0014564867949610853 0.0 0.15223965004300316 4.8549559832036175E-4 80-81 1.471198782788975E-5 0.0014638427888750303 0.0 0.1530193853978813 4.8549559832036175E-4 82-83 1.471198782788975E-5 0.001471198782788975 0.0 0.15351223699011562 4.8549559832036175E-4 84-85 1.471198782788975E-5 0.0015006227584447546 0.0 0.1537917647588455 4.8549559832036175E-4 86-87 1.471198782788975E-5 0.0015153347462726443 0.0 0.15389474867364072 4.8549559832036175E-4 88 1.471198782788975E-5 0.0015741826975842034 0.0 0.1539021046675547 4.8549559832036175E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7230 0.0 46.894005 1 GTATCAA 13075 0.0 37.379322 1 TCAACGC 14915 0.0 31.737465 4 ATCAACG 15095 0.0 31.302969 3 CAACGCA 15250 0.0 30.984354 5 AACGCAG 15815 0.0 29.904383 6 TATCAAC 16115 0.0 29.639864 2 ACGCAGA 18210 0.0 25.994745 7 CGCAGAG 18695 0.0 25.274748 8 GTACATG 16775 0.0 23.058617 1 TACATGG 16710 0.0 22.612354 2 ACATGGG 16665 0.0 21.956387 3 GCAGAGT 22600 0.0 21.001932 9 CATGGGG 12440 0.0 19.9172 4 GAGTACT 14460 0.0 19.051832 12-13 CAGAGTA 21985 0.0 18.34035 10-11 AGAGTAC 20235 0.0 18.314249 10-11 GTACTTT 16655 0.0 16.361893 14-15 TGCGCGA 495 9.128553E-6 15.89791 94 AGTACTT 16280 0.0 15.730086 12-13 >>END_MODULE