##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138680_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5317679 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.68149713437009 30.0 18.0 33.0 18.0 33.0 2 31.417115625068757 33.0 32.0 33.0 27.0 34.0 3 31.668815097714624 33.0 31.0 33.0 29.0 34.0 4 32.72796439950587 33.0 33.0 33.0 32.0 34.0 5 32.704160781423624 33.0 33.0 33.0 32.0 34.0 6 37.01389421963981 38.0 37.0 38.0 35.0 38.0 7 37.02884867627399 38.0 38.0 38.0 35.0 38.0 8 37.38009345806695 38.0 38.0 38.0 37.0 38.0 9 37.464055276747615 38.0 38.0 38.0 37.0 38.0 10-11 37.46390793803086 38.0 38.0 38.0 37.0 38.0 12-13 37.503567345828884 38.0 38.0 38.0 37.5 38.0 14-15 37.50839623828365 38.0 38.0 38.0 37.5 38.0 16-17 37.54292314372492 38.0 38.0 38.0 38.0 38.0 18-19 37.53682189165612 38.0 38.0 38.0 38.0 38.0 20-21 37.54397299126066 38.0 38.0 38.0 38.0 38.0 22-23 37.554505422012525 38.0 38.0 38.0 38.0 38.0 24-25 37.56420468090205 38.0 38.0 38.0 38.0 38.0 26-27 37.52974284653969 38.0 38.0 38.0 38.0 38.0 28-29 37.5031303176604 38.0 38.0 38.0 38.0 38.0 30-31 37.50695129395129 38.0 38.0 38.0 38.0 38.0 32-33 37.49774617396106 38.0 38.0 38.0 38.0 38.0 34-35 37.397180239698024 38.0 38.0 38.0 37.0 38.0 36-37 37.43748624953112 38.0 38.0 38.0 37.0 38.0 38-39 37.44726017658952 38.0 38.0 38.0 37.0 38.0 40-41 37.445999573659634 38.0 38.0 38.0 37.0 38.0 42-43 37.412603350869276 38.0 38.0 38.0 37.0 38.0 44-45 37.38495024657416 38.0 38.0 38.0 37.0 38.0 46-47 37.36465754375168 38.0 38.0 38.0 37.0 38.0 48-49 37.31493019302651 38.0 38.0 38.0 37.0 38.0 50-51 37.288655705128946 38.0 38.0 38.0 37.0 38.0 52-53 37.268560139249324 38.0 38.0 38.0 37.0 38.0 54-55 37.24053963783718 38.0 38.0 38.0 37.0 38.0 56-57 37.200554248350244 38.0 38.0 38.0 37.0 38.0 58-59 37.19373564652651 38.0 38.0 38.0 37.0 38.0 60-61 37.19587155254037 38.0 38.0 38.0 37.0 38.0 62-63 37.2026303751686 38.0 38.0 38.0 37.0 38.0 64-65 37.20889798501576 38.0 38.0 38.0 37.0 38.0 66-67 37.207203980155974 38.0 38.0 38.0 37.0 38.0 68-69 37.20028019593349 38.0 38.0 38.0 37.0 38.0 70-71 37.195186153803164 38.0 38.0 38.0 36.0 38.0 72-73 37.18574056241779 38.0 38.0 38.0 36.0 38.0 74-75 37.18251277436946 38.0 38.0 38.0 36.0 38.0 76-77 37.1697301653051 38.0 38.0 38.0 36.0 38.0 78-79 37.15741285711773 38.0 38.0 38.0 36.0 38.0 80-81 37.14906686028175 38.0 38.0 38.0 36.0 38.0 82-83 37.10069973341954 38.0 38.0 38.0 36.0 38.0 84-85 37.09316030666315 38.0 38.0 38.0 36.0 38.0 86-87 37.08100396576371 38.0 38.0 38.0 36.0 38.0 88-89 37.06849611382319 38.0 38.0 38.0 36.0 38.0 90-91 37.06147973344872 38.0 38.0 38.0 36.0 38.0 92-93 37.04510971582698 38.0 38.0 38.0 36.0 38.0 94-95 37.028373876417646 38.0 38.0 38.0 36.0 38.0 96-97 37.013472585437654 38.0 38.0 38.0 36.0 38.0 98-99 37.02875102565828 38.0 38.0 38.0 36.0 38.0 100 35.65286489279671 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 9.0 21 41.0 22 232.0 23 686.0 24 1740.0 25 3586.0 26 6726.0 27 11205.0 28 17807.0 29 26278.0 30 34762.0 31 44570.0 32 56955.0 33 76824.0 34 115485.0 35 213219.0 36 710874.0 37 3996676.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.26747383585959 21.5502101574766 13.420855226500134 24.761460780163677 2 14.169478175550621 20.82178497321771 42.29775708074257 22.710979770489097 3 17.802512657407792 26.50752580516496 31.0514801969371 24.638481340490145 4 12.495131804683961 17.85393589947795 39.750312119253536 29.900620176584557 5 13.204162944021256 37.41848652391391 36.01922944201784 13.358121090046993 6 29.3964152405589 38.702693411919 19.01032386497944 12.890567482542666 7 25.64985588637449 32.95503545813879 24.29695361453747 17.098155040949255 8 23.425069471098197 37.85627150491784 21.723782123742332 16.99487690024163 9 25.689027111264146 16.73818596421484 21.814705250166472 35.75808167435455 10-11 24.04965587430155 26.78325449881424 29.532480241849875 19.634609385034334 12-13 24.751700883035625 24.560687096757817 29.65004092951079 21.03757109069577 14-15 22.00934843942254 25.78111615988855 27.125057755460606 25.084477645228304 16-17 21.609023410401416 28.760526914091656 27.822627127361393 21.807822548145538 18-19 21.5832132778229 28.084376661321603 29.425450464384934 20.906959596470564 20-21 22.40409279304353 27.311279063644772 29.191295386675293 21.0933327566364 22-23 22.15313890898765 27.180621317284416 29.054493259746017 21.61174651398192 24-25 21.88429271788034 27.295312776962543 29.16988227284546 21.65051223231166 26-27 21.834176166169545 27.446462904634057 29.10011560032607 21.619245328870328 28-29 21.832596521309004 27.560134463451487 29.064866018683507 21.542402996556003 30-31 22.08406106659462 27.367651738211713 29.005031565111405 21.543255630082264 32-33 21.874589145775257 27.517665138977147 28.96622210804165 21.641523607205947 34-35 21.989232895126786 27.583898353774654 28.93781773082465 21.489051020273912 36-37 21.98225964832772 27.450590313761523 28.964615772566262 21.602534265344495 38-39 21.81835870164546 27.624863637111517 29.034504832918874 21.522272828324144 40-41 22.107795203738643 27.43824308391622 28.857595448637962 21.59636626370718 42-43 21.951608188439863 27.576948593793492 28.67389332108683 21.79754989667982 44-45 22.03430720321296 27.639330133697467 28.60590542553888 21.720457237550697 46-47 22.059291627603017 27.62271289272864 28.426227489628843 21.891767990039497 48-49 22.040629413225165 27.743274733819405 28.372023355715626 21.8440724972398 50-51 22.02713970837794 27.847894808368967 28.24628934266917 21.878676140583927 52-53 22.15297246052689 27.766602889190782 28.173298609664577 21.90712604061775 54-55 22.14057224161832 27.6667675265992 28.199822345799834 21.992837885982645 56-57 22.093793266406177 27.78012216056248 28.176433776864805 21.94965079616653 58-59 22.1255032188553 27.777753971952578 28.194521973049554 21.902220836142565 60-61 22.094891915684425 27.77451634183504 28.261286096151967 21.869305646328574 62-63 22.093291375670574 27.758833767724273 28.280134878840478 21.867739977764668 64-65 21.983153946885878 27.76970471169643 28.286878628438235 21.960262712979457 66-67 22.047546654855815 27.916335211969585 28.092529455485682 21.94358867768892 68-69 21.965426268722887 27.778474260228318 28.229926969137193 22.0261725019116 70-71 22.141443135371546 27.55417532528139 28.15584370455132 22.148537834795746 72-73 22.227131189425474 27.720795072403508 28.120494675160266 21.931579063010744 74-75 22.06610152267146 27.849648668613774 28.00314395905516 22.081105849659604 76-77 22.199813301679132 27.613857164259947 28.020536815295433 22.165792718765488 78-79 22.134260096873433 27.678825247190797 27.942956588929718 22.24395806700605 80-81 22.257502550521593 27.723824146040478 27.920800618623325 22.097872684814604 82-83 22.261882732193527 27.66139231491272 27.983541360495007 22.093183592398745 84-85 22.383253520295842 27.669012298972845 27.84379297817289 22.103941202558428 86-87 22.215064627928886 27.729623346307697 27.91333084778518 22.14198117797824 88-89 22.32883791037167 27.657647774506266 27.86059828828603 22.15291602683603 90-91 22.347206509584446 27.72433664443115 27.85045833394116 22.077998512043244 92-93 22.478716028487387 27.724067965966036 27.782184678599286 22.015031326947295 94-95 22.292071238072158 27.810452124735484 27.83683391628652 22.060642720905836 96-97 22.37661364940416 27.853544076447566 27.933034454073557 21.83680782007472 98-99 23.435395486213192 29.748566509187786 28.122443247209933 18.693594757389086 100 29.70627717594082 40.92685654954717 29.366866274512006 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 877.0 1 905.0 2 1231.0 3 1665.0 4 2212.5 5 3175.5 6 3947.5 7 4654.0 8 5354.0 9 5656.5 10 5504.0 11 5459.5 12 6084.5 13 7611.0 14 10627.0 15 14327.5 16 17341.5 17 18931.0 18 18989.5 19 18109.0 20 17109.5 21 16691.0 22 18139.0 23 21758.0 24 27559.0 25 36030.5 26 47161.5 27 60134.0 28 73147.0 29 86659.0 30 99816.0 31 111778.5 32 124141.5 33 136940.5 34 149346.0 35 161414.5 36 175133.5 37 187556.0 38 195923.0 39 202049.5 40 207906.5 41 213804.5 42 218010.5 43 221407.5 44 225110.0 45 228570.5 46 229488.5 47 228323.5 48 226818.5 49 223946.5 50 218446.0 51 209967.0 52 199522.0 53 187496.5 54 174823.5 55 161476.5 56 146500.0 57 130722.5 58 114803.0 59 97018.0 60 79802.0 61 64828.5 62 50894.5 63 38739.0 64 28864.0 65 21541.0 66 15711.0 67 11440.5 68 8367.5 69 6020.5 70 4300.5 71 2960.5 72 1961.5 73 1249.0 74 824.5 75 545.0 76 332.5 77 209.5 78 126.5 79 80.5 80 56.5 81 40.5 82 29.0 83 18.0 84 9.5 85 7.0 86 7.0 87 5.5 88 4.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.010267637441071564 3 7.898182646978127E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 4.701331464083943E-5 22-23 0.0 24-25 9.403494056286494E-5 26-27 1.6928102399219952E-4 28-29 0.0017309522579848874 30-31 0.0021658492469106747 32-33 0.0020480353960919333 34-35 4.921907780674867E-4 36-37 9.505014940932985E-6 38-39 6.696173834968587E-5 40-41 1.8306234004928038E-4 42-43 0.002067137320514494 44-45 1.9573989730114807E-4 46-47 5.039914143580237E-4 48-49 9.77935187644807E-4 50-51 0.0012592598413171414 52-53 0.0 54-55 0.0027357465555209004 56-57 0.052702717793438436 58-59 0.06974535634101532 60-61 0.04555254380937026 62-63 0.0071099388417344665 64-65 0.0 66-67 0.0 68-69 1.6510092289214552E-4 70-71 0.001514700952368224 72-73 0.0071995505858000524 74-75 0.011254826589094939 76-77 0.012594787878075539 78-79 0.0038609768388048003 80-81 0.00816336560323964 82-83 0.04614533327351309 84-85 0.03904026342006028 86-87 0.008688858591583817 88-89 0.0022089026221411463 90-91 0.002188123819639241 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 20.0 20-21 112.0 22-23 301.0 24-25 452.0 26-27 1177.0 28-29 3241.0 30-31 11365.0 32-33 14218.0 34-35 19144.0 36-37 31609.0 38-39 37576.0 40-41 36793.0 42-43 41246.0 44-45 48180.0 46-47 49583.0 48-49 47958.0 50-51 44020.0 52-53 40320.0 54-55 43653.0 56-57 46839.0 58-59 48859.0 60-61 48706.0 62-63 46804.0 64-65 48185.0 66-67 51501.0 68-69 53144.0 70-71 52641.0 72-73 48715.0 74-75 49459.0 76-77 51810.0 78-79 54097.0 80-81 54003.0 82-83 50545.0 84-85 49126.0 86-87 50107.0 88-89 52660.0 90-91 53285.0 92-93 52445.0 94-95 58268.0 96-97 162950.0 98-99 1170008.0 100-101 2492554.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.30518065802106 #Duplication Level Percentage of deduplicated Percentage of total 1 91.09371797068174 79.5295350424119 2 6.403520763400506 11.181210741921403 3 1.4431230675085687 3.779763603617793 4 0.5012643933721126 1.7505191368314248 5 0.22312809159686403 0.9740119173371843 6 0.12095198856572878 0.633584112760671 7 0.07036766578418402 0.43004232416400034 8 0.037703048715754126 0.26333371835896663 9 0.023260167027836953 0.18276597760509447 >10 0.08114802894104849 1.0872415958309525 >50 0.0010680638560094245 0.06084635080670658 >100 7.46750549678513E-4 0.12714547835392978 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.76103935570387E-5 0.0 0.0 0.0 3 0.0 3.76103935570387E-5 0.0 0.0 0.0 4 0.0 7.52207871140774E-5 0.0 0.0 5.641559033555805E-5 5 0.0 7.52207871140774E-5 0.0 0.0 5.641559033555805E-5 6 0.0 7.52207871140774E-5 0.0 0.0 7.52207871140774E-5 7 0.0 7.52207871140774E-5 0.0 3.76103935570387E-5 7.52207871140774E-5 8 0.0 7.52207871140774E-5 0.0 3.76103935570387E-5 7.52207871140774E-5 9 3.76103935570387E-5 9.402598389259676E-5 0.0 3.76103935570387E-5 1.128311806711161E-4 10-11 7.52207871140774E-5 9.402598389259676E-5 0.0 3.76103935570387E-5 1.128311806711161E-4 12-13 7.52207871140774E-5 9.402598389259676E-5 0.0 3.76103935570387E-5 1.128311806711161E-4 14-15 9.402598389259676E-5 1.2223377906037577E-4 0.0 3.76103935570387E-5 1.2223377906037577E-4 16-17 9.402598389259676E-5 1.410389758388951E-4 0.0 3.76103935570387E-5 1.3163637744963546E-4 18-19 1.128311806711161E-4 1.8805196778519352E-4 0.0 3.76103935570387E-5 1.3163637744963546E-4 20-21 1.504415742281548E-4 2.256623613422322E-4 0.0 3.76103935570387E-5 1.410389758388951E-4 22-23 1.8805196778519352E-4 2.5387015651001123E-4 0.0 5.641559033555805E-5 1.5984417261741447E-4 24-25 1.974545661744532E-4 3.102857468455693E-4 0.0 1.0342858228185644E-4 1.8805196778519352E-4 26-27 2.0685716456371285E-4 3.384935420133483E-4 0.0 1.7864936939593383E-4 1.8805196778519352E-4 28-29 2.256623613422322E-4 3.5729873879186767E-4 0.0 4.04311730738166E-4 1.974545661744532E-4 30-31 2.3506495973149187E-4 4.513247226844644E-4 0.0 0.00144800015194599 2.0685716456371285E-4 32-33 2.4446755812075155E-4 4.513247226844644E-4 0.0 0.004372208251005749 2.256623613422322E-4 34-35 2.5387015651001123E-4 5.359481081878014E-4 0.0 0.007992208630870724 2.820779516777903E-4 36-37 3.384935420133483E-4 5.829611001340999E-4 0.0 0.014009871599996917 2.9148055006704995E-4 38-39 3.7610393557038703E-4 5.829611001340999E-4 0.0 0.03146109421046288 3.008831484563096E-4 40-41 4.04311730738166E-4 6.111688953018789E-4 0.0 0.05057657673582779 3.008831484563096E-4 42-43 4.137143291274257E-4 6.487792888589176E-4 0.0 0.06222639614012053 3.008831484563096E-4 44-45 4.137143291274257E-4 7.145974775837353E-4 0.0 0.07616104695300337 3.008831484563096E-4 46-47 4.3251952590594506E-4 7.522078711407741E-4 0.0 0.09103595760481217 3.1028574684556926E-4 48-49 4.607273210737241E-4 7.522078711407741E-4 0.0 0.10460390708051388 3.384935420133483E-4 50-51 4.983377146307627E-4 8.08623461476332E-4 0.0 0.11902749300963822 3.384935420133483E-4 52-53 5.077403130200225E-4 8.274286582548514E-4 0.0 0.16034251033204522 3.5729873879186767E-4 54-55 5.171429114092822E-4 8.274286582548514E-4 0.0 0.2107874506904234 3.7610393557038703E-4 56-57 5.359481081878014E-4 8.650390518118901E-4 0.0 0.28223779585040765 3.7610393557038703E-4 58-59 5.453507065770612E-4 8.650390518118901E-4 0.0 0.3270223719784515 3.7610393557038703E-4 60-61 5.453507065770612E-4 8.932468469796692E-4 0.0 0.3461190493070379 3.7610393557038703E-4 62-63 5.641559033555805E-4 9.120520437581885E-4 0.0 0.3619248171993834 3.7610393557038703E-4 64-65 6.017662969126192E-4 9.684676340937465E-4 0.0 0.3715718831467638 3.8550653395964666E-4 66-67 6.205714936911385E-4 9.778702324830062E-4 0.0 0.3797991567373661 3.9490913234890634E-4 68-69 6.205714936911385E-4 9.966754292615254E-4 0.0 0.38794180694246494 3.9490913234890634E-4 70-71 6.205714936911385E-4 0.001015480626040045 0.0 0.3947210803811212 4.3251952590594506E-4 72-73 6.299740920803982E-4 0.001015480626040045 0.0 0.3993001457966906 4.7012991946298373E-4 74-75 6.581818872481773E-4 0.0010248832244293044 0.0 0.4028919383813878 4.7012991946298373E-4 76-77 6.581818872481773E-4 0.0011001040115433819 0.0 0.40673760112259505 4.7012991946298373E-4 78-79 6.581818872481773E-4 0.0011471170034896803 0.0 0.4094079390651448 4.7012991946298373E-4 80-81 6.581818872481773E-4 0.00115651960187894 0.0 0.4103293937072922 4.795325178522434E-4 82-83 6.581818872481773E-4 0.0011941299954359788 0.0 0.4109687703977619 5.077403130200225E-4 84-85 6.581818872481773E-4 0.001212935192214498 0.0 0.4112602509478289 5.077403130200225E-4 86-87 6.581818872481773E-4 0.001241142987382277 0.0 0.4114012899236678 5.077403130200225E-4 88 6.581818872481773E-4 0.0012787533809393158 0.0 0.41143890031722485 5.265455097985418E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5685 0.0 45.5357 1 GTATCAA 10485 0.0 35.831985 1 TCAACGC 12135 0.0 30.471056 4 ATCAACG 12325 0.0 30.00132 3 CAACGCA 12410 0.0 29.82969 5 TATCAAC 12945 0.0 28.957735 2 AACGCAG 12860 0.0 28.85123 6 ACGCAGA 14810 0.0 24.99571 7 CGCAGAG 15175 0.0 24.449875 8 GCAGAGT 18570 0.0 20.09304 9 CGTCGAA 270 5.6201464E-4 19.919256 94 TATACCG 470 0.0 19.668419 5 GTACATG 14185 0.0 19.405006 1 TACATGG 14060 0.0 19.248741 2 ACATGGG 14085 0.0 18.6154 3 GAGTACT 10790 0.0 18.322418 12-13 AGAGTAC 16560 0.0 18.040722 10-11 CAGAGTA 18110 0.0 17.540743 10-11 CATGGGG 10220 0.0 16.89801 4 GTACTTT 12325 0.0 16.074646 14-15 >>END_MODULE