##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138679_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5620600 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.29587926555884 30.0 18.0 33.0 18.0 33.0 2 31.149547913034194 32.0 31.0 33.0 27.0 34.0 3 31.45475572002989 33.0 31.0 33.0 29.0 34.0 4 32.72463260150162 33.0 33.0 33.0 32.0 34.0 5 32.67672276981105 33.0 33.0 33.0 32.0 34.0 6 36.972698288438956 38.0 37.0 38.0 35.0 38.0 7 37.0399293669715 38.0 38.0 38.0 35.0 38.0 8 37.365209764082124 38.0 38.0 38.0 37.0 38.0 9 37.45314717289969 38.0 38.0 38.0 37.0 38.0 10-11 37.468565900437675 38.0 38.0 38.0 37.0 38.0 12-13 37.496010657225206 38.0 38.0 38.0 37.0 38.0 14-15 37.50498158559584 38.0 38.0 38.0 37.0 38.0 16-17 37.53509482973348 38.0 38.0 38.0 37.5 38.0 18-19 37.53755399779383 38.0 38.0 38.0 38.0 38.0 20-21 37.54059778072588 38.0 38.0 38.0 38.0 38.0 22-23 37.54984057789514 38.0 38.0 38.0 38.0 38.0 24-25 37.559817633670676 38.0 38.0 38.0 38.0 38.0 26-27 37.53057414563152 38.0 38.0 38.0 38.0 38.0 28-29 37.507269896496624 38.0 38.0 38.0 38.0 38.0 30-31 37.50842341830088 38.0 38.0 38.0 38.0 38.0 32-33 37.49697925911636 38.0 38.0 38.0 38.0 38.0 34-35 37.399584838747884 38.0 38.0 38.0 37.0 38.0 36-37 37.44249312424158 38.0 38.0 38.0 37.0 38.0 38-39 37.448255024234925 38.0 38.0 38.0 37.0 38.0 40-41 37.44368712091725 38.0 38.0 38.0 37.0 38.0 42-43 37.410734463354586 38.0 38.0 38.0 37.0 38.0 44-45 37.383952219081934 38.0 38.0 38.0 37.0 38.0 46-47 37.35908722125512 38.0 38.0 38.0 37.0 38.0 48-49 37.30628015767667 38.0 38.0 38.0 37.0 38.0 50-51 37.27806186934207 38.0 38.0 38.0 37.0 38.0 52-53 37.25694328269087 38.0 38.0 38.0 37.0 38.0 54-55 37.229331009308666 38.0 38.0 38.0 37.0 38.0 56-57 37.1844217692684 38.0 38.0 38.0 37.0 38.0 58-59 37.17488507735838 38.0 38.0 38.0 37.0 38.0 60-61 37.17570285799475 38.0 38.0 38.0 36.5 38.0 62-63 37.180316031862745 38.0 38.0 38.0 36.0 38.0 64-65 37.184638053089884 38.0 38.0 38.0 36.0 38.0 66-67 37.1819627680088 38.0 38.0 38.0 36.0 38.0 68-69 37.17126774441469 38.0 38.0 38.0 36.0 38.0 70-71 37.16547096966923 38.0 38.0 38.0 36.0 38.0 72-73 37.15554109933894 38.0 38.0 38.0 36.0 38.0 74-75 37.15322938174813 38.0 38.0 38.0 36.0 38.0 76-77 37.13903069886567 38.0 38.0 38.0 36.0 38.0 78-79 37.124006286029584 38.0 38.0 38.0 36.0 38.0 80-81 37.11396731184203 38.0 38.0 38.0 36.0 38.0 82-83 37.06530719605368 38.0 38.0 38.0 36.0 38.0 84-85 37.0550220569171 38.0 38.0 38.0 36.0 38.0 86-87 37.04080496034986 38.0 38.0 38.0 36.0 38.0 88-89 37.02489396184731 38.0 38.0 38.0 36.0 38.0 90-91 37.013726770427695 38.0 38.0 38.0 36.0 38.0 92-93 36.99427208535363 38.0 38.0 38.0 36.0 38.0 94-95 36.977625580533356 38.0 38.0 38.0 36.0 38.0 96-97 36.96257786353871 38.0 38.0 38.0 35.0 38.0 98-99 36.977095418628366 38.0 38.0 38.0 35.0 38.0 100 35.58390252032316 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 9.0 20 11.0 21 58.0 22 254.0 23 728.0 24 1734.0 25 3813.0 26 7019.0 27 12000.0 28 19199.0 29 27738.0 30 37273.0 31 47568.0 32 61620.0 33 83101.0 34 124640.0 35 231163.0 36 774291.0 37 4188380.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.456783973241286 22.545849197594563 13.601466035654555 24.39590079350959 2 14.186617927068893 21.13740200079323 41.96354458867157 22.71243548346631 3 17.545302037005968 26.972061290054555 31.255323097211253 24.227313575728225 4 12.598761698039354 18.272141764224457 39.69549514286731 29.433601394868873 5 13.138348219051347 37.81964558943885 35.893392164537595 13.148614026972211 6 29.289381916521368 39.07445824289222 18.948386293278297 12.687773547308117 7 25.758335409031062 33.34642209016831 24.125520407073978 16.76972209372665 8 23.692684055083088 37.937835818240046 21.464434402021137 16.905045724655732 9 25.884620858983027 17.04145464896986 21.652599366615664 35.421325125431444 10-11 23.964381026936625 27.08365654912287 29.37812689036758 19.57383553357293 12-13 24.842214354339394 24.861206988577734 29.431920079706792 20.86465857737608 14-15 22.08535565597979 26.08505319716756 26.95267409173398 24.87691705511867 16-17 21.570606340960037 29.107862149948403 27.634585275593356 21.6869462334982 18-19 21.60692808596947 28.43657260790663 29.231309824573888 20.725189481550014 20-21 22.46098149323072 27.61882403428284 29.02702552673783 20.89316894574861 22-23 22.25488523237937 27.465114760503646 28.830971057532466 21.44902894958452 24-25 21.9321473102739 27.651561353850973 28.934790083882817 21.48150125199231 26-27 21.869172316452797 27.826906159408004 28.85217362058155 21.451747903557646 28-29 21.88983307912827 27.884159392983943 28.83757969720403 21.388427830683764 30-31 22.1488735602609 27.756834381235706 28.74389186406584 21.350400194437558 32-33 21.89363977275223 27.87806974019057 28.723562288611237 21.50472819844596 34-35 22.03955897682925 27.917672118549657 28.685955053313677 21.356813851307415 36-37 22.05195479157581 27.806160175192794 28.680390126339855 21.46149490689154 38-39 21.882354195734017 27.97445799512486 28.789185739472025 21.3540020696691 40-41 22.145999194516307 27.78364831723397 28.683960069255587 21.386392418994134 42-43 22.037040427713492 27.927951516039258 28.39216529954592 21.642842756701334 44-45 22.095868882318147 28.025146190414514 28.31454730694876 21.56443762031858 46-47 22.114743252133746 28.05197396592467 28.098089120164737 21.735193661776847 48-49 22.117670651850315 28.086245281401546 28.08896797854665 21.70711608820149 50-51 22.10461119326305 28.19959503548765 27.978830961541245 21.71696280970805 52-53 22.2103670130379 28.150571144662596 27.90239425285415 21.736667589445357 54-55 22.218679596321465 28.08493145836411 27.91335615489733 21.7830327904171 56-57 22.224472038451278 28.196278109382998 27.860947638126525 21.71830221403919 58-59 22.188547817844714 28.21921727011994 27.871561565459764 21.720673346575587 60-61 22.271803946573907 28.22102110698157 27.935266691107184 21.571908255337334 62-63 22.27251987379741 28.265298584721847 27.884724946922958 21.577456594557784 64-65 22.23111472576464 28.289152037274906 27.797322515115074 21.682410721845372 66-67 22.316556362240796 28.484617858933287 27.581540232990797 21.617285545835117 68-69 22.211937379938025 28.21259602907571 27.830294497367863 21.745172093618404 70-71 22.335108579041947 27.957566084777696 27.8058077005362 21.901517635644158 72-73 22.304224930486395 28.220708120309173 27.764181796201232 21.7108851530032 74-75 22.1481117635326 28.285330832871686 27.736848608653126 21.82970879494259 76-77 22.23251139777459 27.900833754286513 27.927073465852597 21.9395813820863 78-79 22.17179694881032 27.919543978759197 27.910971826228003 21.997687246202478 80-81 22.16110942529524 28.005611637596445 27.881721459807597 21.951557477300724 82-83 22.242757863030455 27.883078023110496 27.993943968450658 21.880220145408394 84-85 22.35837612462184 27.908366135676125 27.841542378088242 21.891715361613794 86-87 22.14732976233203 27.94780288614555 27.9453198890326 21.959547462489816 88-89 22.267144178551668 27.86369290596225 27.90836118774936 21.96080172773672 90-91 22.310029706806038 27.893917898018454 27.87354797890079 21.92250441627472 92-93 22.360007054733128 27.910475062360472 27.817682866354907 21.91183501655149 94-95 22.180474407937307 27.897239833121883 27.940042755560974 21.982243003379832 96-97 22.27504955823491 28.08920422086268 27.908019434413067 21.727726786489338 98-99 23.32963574098229 29.99584980049519 28.155689577562754 18.518824880959766 100 29.64334595518931 40.94007116524055 29.416582879570136 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1003.0 1 989.5 2 1164.0 3 1482.5 4 1913.0 5 2674.5 6 3319.5 7 3910.5 8 4511.5 9 4805.5 10 4932.5 11 5275.5 12 6092.5 13 7726.5 14 10905.5 15 14756.0 16 17823.5 17 19636.5 18 19941.0 19 19034.5 20 18112.0 21 17892.5 22 19233.0 23 23156.5 24 29641.5 25 38331.0 26 49680.0 27 62840.0 28 76055.5 29 90973.0 30 105838.5 31 118811.5 32 132804.0 33 147905.0 34 161806.0 35 175396.0 36 190274.0 37 202453.5 38 211371.5 39 217582.5 40 222051.0 41 226229.0 42 227855.0 43 228816.5 44 232167.0 45 235025.0 46 234046.0 47 233149.5 48 231810.5 49 228002.0 50 223073.0 51 216228.5 52 206720.5 53 194844.0 54 181493.0 55 166504.0 56 150433.0 57 133793.0 58 117119.5 59 99345.0 60 81536.5 61 65304.5 62 51005.0 63 38683.5 64 28309.0 65 20853.0 66 15355.0 67 11590.0 68 8711.5 69 6185.5 70 4407.0 71 3090.5 72 2098.5 73 1363.0 74 885.0 75 598.5 76 388.5 77 225.0 78 127.0 79 80.5 80 51.5 81 37.0 82 29.0 83 19.5 84 11.5 85 5.0 86 1.5 87 1.5 88 1.5 89 1.0 90 1.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.009411806568693734 3 8.362096573319575E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.7791887931032946E-5 22-23 0.0 24-25 8.896721958310851E-5 26-27 1.334645913100671E-4 28-29 0.0016288084411795883 30-31 0.0024856456192767786 32-33 0.0022585714348204405 34-35 4.564621072009314E-4 36-37 0.0 38-39 1.807413086700973E-5 40-41 1.2733465822013435E-4 42-43 0.002187955642906964 44-45 1.6605181370093515E-4 46-47 4.001904534288132E-4 48-49 0.0010609017702601256 50-51 0.0011076897908113628 52-53 0.0 54-55 0.0029045482725343417 56-57 0.05345577519314416 58-59 0.06947108868029504 60-61 0.04578276424158638 62-63 0.00765554741599856 64-65 0.0 66-67 0.0 68-69 1.6404683865337233E-4 70-71 0.0015022279594667817 72-73 0.007368187161164127 74-75 0.01190051046425836 76-77 0.01353986540006992 78-79 0.0040591920890664475 80-81 0.007664748696146543 82-83 0.046567411932984894 84-85 0.03915874775504172 86-87 0.008859000264641474 88-89 0.0020318917974240405 90-91 0.0027613591802714637 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 35.0 20-21 147.0 22-23 292.0 24-25 445.0 26-27 1375.0 28-29 3459.0 30-31 10982.0 32-33 13352.0 34-35 18369.0 36-37 30252.0 38-39 36152.0 40-41 34850.0 42-43 39442.0 44-45 46707.0 46-47 47541.0 48-49 45098.0 50-51 42735.0 52-53 40089.0 54-55 43849.0 56-57 46459.0 58-59 46326.0 60-61 45846.0 62-63 43200.0 64-65 45669.0 66-67 48933.0 68-69 50165.0 70-71 49849.0 72-73 46474.0 74-75 47528.0 76-77 50344.0 78-79 52043.0 80-81 52292.0 82-83 49246.0 84-85 48146.0 86-87 49914.0 88-89 52166.0 90-91 52692.0 92-93 51720.0 94-95 58325.0 96-97 170279.0 98-99 1265744.0 100-101 2742069.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.17720262530919 #Duplication Level Percentage of deduplicated Percentage of total 1 90.31994622519153 77.8352030695536 2 6.816912217312156 11.74924850860511 3 1.6299114372939592 4.2138362457897145 4 0.6047744670757155 2.0847108716718927 5 0.25747947342016575 1.1094430376393767 6 0.13151504089342542 0.6800158996409128 7 0.07307833262071628 0.4408380394442646 8 0.04488876135924711 0.30947103066039905 9 0.02719436272706751 0.2109180696296987 >10 0.09217545704268282 1.1806860111788202 >50 0.0014488514867928995 0.087458350061645 >100 6.75373576541456E-4 0.09817086612455121 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.779169483685016E-5 0.0 0.0 0.0 3 0.0 1.779169483685016E-5 0.0 0.0 0.0 4 0.0 1.779169483685016E-5 0.0 3.558338967370032E-5 0.0 5 0.0 1.779169483685016E-5 0.0 3.558338967370032E-5 0.0 6 1.2454186385795111E-4 1.779169483685016E-5 0.0 3.558338967370032E-5 0.0 7 1.2454186385795111E-4 1.779169483685016E-5 0.0 3.558338967370032E-5 0.0 8 1.2454186385795111E-4 1.779169483685016E-5 0.0 3.558338967370032E-5 0.0 9 1.779169483685016E-4 3.558338967370032E-5 0.0 5.337508451055048E-5 0.0 10-11 1.8681279578692666E-4 3.558338967370032E-5 0.0 9.785432160267587E-5 0.0 12-13 1.9570864320535175E-4 3.558338967370032E-5 0.0 1.2454186385795111E-4 0.0 14-15 2.135003380422019E-4 8.006262676582572E-5 0.0 1.334377112763762E-4 8.89584741842508E-6 16-17 3.736255915738533E-4 8.89584741842508E-5 0.0 1.4233355869480127E-4 1.779169483685016E-5 18-19 4.0031313382912857E-4 1.1564601643952603E-4 0.0 1.4233355869480127E-4 1.779169483685016E-5 20-21 4.181048286659787E-4 1.4233355869480127E-4 0.0 1.4233355869480127E-4 1.779169483685016E-5 22-23 4.270006760844038E-4 1.6902110095007652E-4 0.0 1.6012525353165143E-4 3.558338967370032E-5 24-25 4.270006760844038E-4 1.779169483685016E-4 0.0 1.8681279578692666E-4 5.337508451055048E-5 26-27 4.4479237092125395E-4 1.779169483685016E-4 0.0 2.2239618546062698E-4 5.337508451055048E-5 28-29 4.4479237092125395E-4 1.779169483685016E-4 0.0 4.892716080133793E-4 5.337508451055048E-5 30-31 4.5368821833967907E-4 2.135003380422019E-4 0.0 0.0013076895705084867 5.337508451055048E-5 32-33 4.714799131765292E-4 2.135003380422019E-4 0.0 0.0030423798171013774 5.337508451055048E-5 34-35 4.981674554318045E-4 2.668754225527524E-4 0.0 0.0053641959933103224 7.116677934740064E-5 36-37 5.159591502686546E-4 3.3804220190015305E-4 0.0 0.008575596911361777 7.116677934740064E-5 38-39 5.515425399423549E-4 4.0031313382912857E-4 0.0 0.013797459345977297 7.116677934740064E-5 40-41 6.049176244529054E-4 4.270006760844038E-4 0.0 0.01917944703412447 7.116677934740064E-5 42-43 6.405010141266057E-4 4.270006760844038E-4 0.0 0.024374621926484714 7.116677934740064E-5 44-45 6.582927089634559E-4 4.4479237092125395E-4 0.0 0.0308952780841903 7.116677934740064E-5 46-47 6.582927089634559E-4 4.714799131765292E-4 0.0 0.03778955983346974 7.116677934740064E-5 48-49 6.582927089634559E-4 4.8037576059495427E-4 0.0 0.044630466498238625 7.116677934740064E-5 50-51 7.116677934740064E-4 5.337508451055047E-4 0.0 0.051222289435291606 7.116677934740064E-5 52-53 7.294594883108565E-4 5.337508451055047E-4 0.0 0.05756502864462869 8.006262676582572E-5 54-55 7.294594883108565E-4 5.693342347792051E-4 0.0 0.06387218446429208 8.89584741842508E-5 56-57 7.294594883108565E-4 6.049176244529054E-4 0.0 0.07070419528164253 9.785432160267587E-5 58-59 7.472511831477066E-4 6.405010141266057E-4 0.0 0.07731380991353237 1.0675016902110095E-4 60-61 8.095221150766821E-4 6.405010141266057E-4 0.0 0.0841725082731381 1.0675016902110095E-4 62-63 9.429598263530584E-4 6.582927089634559E-4 0.0 0.09117354019143864 1.2454186385795111E-4 64-65 9.607515211899085E-4 6.849802512187311E-4 0.0 0.09763192541721524 1.2454186385795111E-4 66-67 0.001005230758282034 6.938760986371561E-4 0.0 0.10433939437070774 1.2454186385795111E-4 68-69 0.001014126605700459 7.205636408924314E-4 0.0 0.11087784222325019 1.2454186385795111E-4 70-71 0.0010586058427925844 7.472511831477066E-4 0.0 0.11669572643490018 1.5122940611322634E-4 72-73 0.0011920435540689607 7.472511831477066E-4 0.0 0.12116144183894959 2.3129203287905207E-4 74-75 0.0011920435540689607 7.739387254029819E-4 0.0 0.12448848877344056 2.3129203287905207E-4 76-77 0.0011920435540689607 8.273138099135324E-4 0.0 0.12811799452015799 2.4018788029747716E-4 78-79 0.0011920435540689607 8.362096573319574E-4 0.0 0.13069779027150125 2.4908372771590223E-4 80-81 0.0012009394014873857 8.451055047503825E-4 0.0 0.13151620823399637 2.4908372771590223E-4 82-83 0.0012187310963242357 8.628971995872326E-4 0.0 0.13213891755328613 2.4908372771590223E-4 84-85 0.001227626943742661 8.895847418425079E-4 0.0 0.13250364729744155 2.4908372771590223E-4 86-87 0.0012365227911610862 9.251681315162083E-4 0.0 0.1326281891612995 2.4908372771590223E-4 88 0.0012632103334163612 0.001014126605700459 0.0 0.13265487670355477 2.4908372771590223E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6555 0.0 47.83674 1 GTATCAA 12120 0.0 35.919853 1 TCAACGC 14165 0.0 30.822054 4 ATCAACG 14305 0.0 30.550062 3 CAACGCA 14350 0.0 30.483831 5 AACGCAG 14830 0.0 29.554386 6 TATCAAC 15010 0.0 29.512747 2 ACGCAGA 17260 0.0 25.393484 7 CGCAGAG 17565 0.0 24.952549 8 GCAGAGT 21055 0.0 20.816507 9 GTACATG 15770 0.0 19.561068 1 GAGTACT 11845 0.0 19.163794 12-13 TACATGG 15985 0.0 18.952888 2 TATACCG 520 0.0 18.766672 5 ACATGGG 16025 0.0 18.586683 3 CAGAGTA 20505 0.0 18.436594 10-11 AGAGTAC 18945 0.0 17.961498 10-11 GTACTTT 13390 0.0 16.873446 14-15 CATGGGG 10985 0.0 16.067785 4 AGTACTT 13380 0.0 15.585839 12-13 >>END_MODULE