##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138678_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4604481 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.433193447860898 30.0 18.0 33.0 18.0 33.0 2 31.17813820927918 32.0 31.0 33.0 27.0 34.0 3 31.431288998694967 33.0 31.0 33.0 29.0 34.0 4 32.73137015876491 33.0 33.0 33.0 32.0 34.0 5 32.654346277028836 33.0 33.0 33.0 32.0 34.0 6 36.95131677164049 38.0 37.0 38.0 35.0 38.0 7 37.0211509179862 38.0 38.0 38.0 35.0 38.0 8 37.35884565491746 38.0 38.0 38.0 37.0 38.0 9 37.447195460248395 38.0 38.0 38.0 37.0 38.0 10-11 37.464037857904074 38.0 38.0 38.0 37.0 38.0 12-13 37.49414092489469 38.0 38.0 38.0 37.0 38.0 14-15 37.50181366803338 38.0 38.0 38.0 37.0 38.0 16-17 37.53195463288914 38.0 38.0 38.0 37.5 38.0 18-19 37.53579078727874 38.0 38.0 38.0 38.0 38.0 20-21 37.54153335112689 38.0 38.0 38.0 38.0 38.0 22-23 37.55187259322086 38.0 38.0 38.0 38.0 38.0 24-25 37.562860857978094 38.0 38.0 38.0 38.0 38.0 26-27 37.53371396968243 38.0 38.0 38.0 38.0 38.0 28-29 37.50865778995212 38.0 38.0 38.0 38.0 38.0 30-31 37.51192683294244 38.0 38.0 38.0 38.0 38.0 32-33 37.50147736829286 38.0 38.0 38.0 38.0 38.0 34-35 37.401940457958176 38.0 38.0 38.0 37.0 38.0 36-37 37.44590945599447 38.0 38.0 38.0 37.0 38.0 38-39 37.45211270072322 38.0 38.0 38.0 37.0 38.0 40-41 37.448189052777224 38.0 38.0 38.0 37.0 38.0 42-43 37.416621709274025 38.0 38.0 38.0 37.0 38.0 44-45 37.38853972952276 38.0 38.0 38.0 37.0 38.0 46-47 37.36468241077772 38.0 38.0 38.0 37.0 38.0 48-49 37.31222160827643 38.0 38.0 38.0 37.0 38.0 50-51 37.27982671152846 38.0 38.0 38.0 37.0 38.0 52-53 37.25493711597865 38.0 38.0 38.0 37.0 38.0 54-55 37.225662731843315 38.0 38.0 38.0 37.0 38.0 56-57 37.17802874296224 38.0 38.0 38.0 37.0 38.0 58-59 37.16818408607766 38.0 38.0 38.0 36.0 38.0 60-61 37.1665967904126 38.0 38.0 38.0 36.0 38.0 62-63 37.170335729399355 38.0 38.0 38.0 36.0 38.0 64-65 37.174110311414026 38.0 38.0 38.0 36.0 38.0 66-67 37.16872924960963 38.0 38.0 38.0 36.0 38.0 68-69 37.157115259260884 38.0 38.0 38.0 36.0 38.0 70-71 37.14993957243055 38.0 38.0 38.0 36.0 38.0 72-73 37.13890565458152 38.0 38.0 38.0 36.0 38.0 74-75 37.134256539587234 38.0 38.0 38.0 36.0 38.0 76-77 37.11826921293263 38.0 38.0 38.0 36.0 38.0 78-79 37.104405114425546 38.0 38.0 38.0 36.0 38.0 80-81 37.094287668524814 38.0 38.0 38.0 36.0 38.0 82-83 37.04380892027138 38.0 38.0 38.0 36.0 38.0 84-85 37.03169103235071 38.0 38.0 38.0 36.0 38.0 86-87 37.0177813687784 38.0 38.0 38.0 36.0 38.0 88-89 37.00176189027586 38.0 38.0 38.0 36.0 38.0 90-91 36.990595643633974 38.0 38.0 38.0 36.0 38.0 92-93 36.97087335567687 38.0 38.0 38.0 36.0 38.0 94-95 36.953728944170194 38.0 38.0 38.0 35.0 38.0 96-97 36.94040690133741 38.0 38.0 38.0 35.0 38.0 98-99 36.95350793737596 38.0 38.0 38.0 35.0 38.0 100 35.525829694039615 38.0 36.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 3.0 20 6.0 21 46.0 22 195.0 23 523.0 24 1401.0 25 2985.0 26 5541.0 27 9544.0 28 15341.0 29 22632.0 30 29892.0 31 38951.0 32 50181.0 33 68348.0 34 104127.0 35 194218.0 36 656448.0 37 3404097.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.38113763527312 22.483359145145783 13.627268741037263 24.508234478543837 2 14.151387226086488 20.98979845386889 42.34199853692696 22.516815783117668 3 17.781318792057085 26.740075266220376 31.24744812416494 24.231157817557598 4 12.614081804225059 18.19592696766476 39.71407418121608 29.4759170468941 5 13.192952691085052 37.716715521249846 35.94185750793629 13.148474279728811 6 29.294637115453405 39.2017037316475 18.9142706854475 12.589388467451599 7 25.756105845588245 33.3260143759959 24.16107265943762 16.75680711897823 8 23.459256320093406 38.38762718317222 21.506245763637637 16.646870733096737 9 25.848711287982297 17.202850875049762 21.807908426595745 35.1405294103722 10-11 24.029602902042598 27.23490443331181 29.409796674152854 19.32569599049274 12-13 24.737728312919526 24.93415653143101 29.528528839623835 20.79958631602563 14-15 22.010091908295422 26.231088802407914 26.971020186639926 24.787799102656738 16-17 21.52633488986055 29.195776896462384 27.7308235173519 21.547064696325165 18-19 21.574049279386752 28.536636376607916 29.311229647814812 20.578084696190516 20-21 22.37264724119246 27.76813007459113 29.060872832388775 20.79834985182764 22-23 22.147040477603227 27.641647286333455 28.915178427929924 21.296133808133398 24-25 21.902321307618518 27.804204306868417 28.998920410432998 21.294553975080063 26-27 21.823215610954307 27.943636015490874 28.917284215975126 21.315864157579693 28-29 21.788261639662643 28.01678203035971 28.931923524578384 21.263032805399263 30-31 22.05509965798982 27.888902809425247 28.85330234273927 21.202695189845663 32-33 21.833484664007752 28.06345424163712 28.769163858964898 21.333897235390232 34-35 21.930883762811746 28.123872453158267 28.763163161500067 21.182080622529917 36-37 21.95484941756056 27.948739621249707 28.781059411896432 21.3153515492933 38-39 21.80805759176013 28.12702705121424 28.873727670603206 21.19118768642242 40-41 22.014100826663494 27.953268158839656 28.804968237476785 21.227662777020065 42-43 21.92181954860929 28.074302986454875 28.59451085443638 21.409366610499458 44-45 22.00074903108931 28.20434200782133 28.438699487710185 21.356209473379177 46-47 22.023921995288397 28.152172909060454 28.254072476181147 21.56983261947 48-49 22.00186870666761 28.22731143108448 28.26472930110417 21.506090561143747 50-51 21.935702585610187 28.34174019769526 28.202769108698945 21.51978810799561 52-53 22.107178826560485 28.278721161728537 28.082410118280833 21.531689893430144 54-55 22.115083747958167 28.194736584823275 28.083378851736583 21.60680081548197 56-57 22.088665482768945 28.28314643390551 28.091339266809978 21.536848816515565 58-59 22.102101733341904 28.371630392149072 28.089233074038734 21.43703480047029 60-61 22.142435063944827 28.374553885676868 28.103814088360497 21.37919696201781 62-63 22.169473157719242 28.451640742992762 28.015355608732325 21.363530490555675 64-65 22.098248163427066 28.46907911411077 27.988850745879112 21.443821976583052 66-67 22.23962869593735 28.66675125680041 27.758198270115113 21.335421777147126 68-69 22.121913994057806 28.342855268064284 28.02829386909385 21.50693686878406 70-71 22.22343953129151 28.102166553643983 28.01233934761955 21.66205456744495 72-73 22.227655641136916 28.371043680864343 27.965736980621042 21.4355636973777 74-75 22.049896106188562 28.454823961107444 27.92801295307582 21.56726697962817 76-77 22.13060938955019 28.126477011922912 28.056165818130925 21.686747780395976 78-79 22.03327275157556 28.131907301265567 28.027368856454483 21.80745109070439 80-81 22.052477630424104 28.18074776095686 28.043491452797674 21.723283155821363 82-83 22.10482573974761 28.024522188752123 28.228197521639224 21.64245454986104 84-85 22.180062104619857 28.01735956262491 28.07785375683399 21.724724575921243 86-87 22.0479766273064 28.106137071109334 28.12878632419178 21.717099977392486 88-89 22.138432833720753 28.019809085331875 28.058222782558772 21.783535298388596 90-91 22.144754552511447 28.110499440950882 28.053625985457604 21.691120021080067 92-93 22.18394749631185 28.094866584851975 28.012638494917347 21.708547423918827 94-95 22.044899364148534 28.110275370193193 28.088480837891012 21.756344427767253 96-97 22.120668637602193 28.228708285113896 28.131477708814167 21.51914536846974 98-99 23.231107391252642 30.111347858518723 28.357369054232397 18.30017569599624 100 29.31831136771621 41.0932792062556 29.588409426028196 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 828.0 1 790.5 2 924.0 3 1198.5 4 1535.0 5 2150.5 6 2674.0 7 3202.5 8 3794.0 9 4112.5 10 4229.0 11 4354.5 12 4847.5 13 6081.0 14 8529.0 15 11375.0 16 13624.0 17 15073.5 18 15482.0 19 15131.5 20 14664.5 21 14882.0 22 16596.0 23 20314.5 24 26140.0 25 33955.5 26 43695.0 27 54491.5 28 65167.5 29 76367.0 30 87205.0 31 97759.5 32 109716.5 33 121985.0 34 133629.0 35 145505.0 36 157526.5 37 167322.0 38 175013.5 39 180774.5 40 186034.0 41 190958.0 42 193503.5 43 195833.5 44 199075.0 45 201312.0 46 200376.0 47 198358.5 48 196001.0 49 190845.5 50 184321.5 51 176961.5 52 166481.0 53 154337.0 54 142974.5 55 130728.5 56 117137.5 57 103525.5 58 90521.5 59 76853.5 60 63117.0 61 50403.5 62 39133.0 63 29959.0 64 22182.0 65 16311.0 66 12078.0 67 9088.5 68 6838.0 69 4984.0 70 3580.5 71 2570.0 72 1795.0 73 1157.5 74 748.5 75 499.5 76 346.5 77 225.5 78 141.0 79 85.0 80 50.5 81 30.5 82 23.5 83 17.0 84 9.5 85 6.0 86 3.5 87 2.5 88 2.0 89 1.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.010272601841553913 3 5.429493573759996E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 5.4295448684014064E-5 22-23 0.0 24-25 1.1945952168407518E-4 26-27 2.0635920882313777E-4 28-29 0.0016622264578214925 30-31 0.0024142847355216324 32-33 0.0020709891480168645 34-35 5.683814845359247E-4 36-37 0.0 38-39 4.4193909173340775E-5 40-41 2.0029227093268433E-4 42-43 0.0018490459091204021 44-45 1.5816619403218613E-4 46-47 5.815630819194319E-4 48-49 0.0010703859316759999 50-51 0.0013239590836252044 52-53 0.0 54-55 0.0029990473891993675 56-57 0.05307077716159754 58-59 0.06905577179930708 60-61 0.045157578450968745 62-63 0.007734823289932925 64-65 0.0 66-67 0.0 68-69 1.6404410616026E-4 70-71 0.001606992201623955 72-73 0.007591029851434911 74-75 0.01172752113394326 76-77 0.013862998066677337 78-79 0.004003156775056902 80-81 0.008193534238613477 82-83 0.045550559556029706 84-85 0.038456484664530804 86-87 0.008986549528060083 88-89 0.0025186368574503597 90-91 0.002207661153923121 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 29.0 20-21 85.0 22-23 224.0 24-25 354.0 26-27 1020.0 28-29 2695.0 30-31 10179.0 32-33 11818.0 34-35 16788.0 36-37 27629.0 38-39 32599.0 40-41 31204.0 42-43 34290.0 44-45 40242.0 46-47 41201.0 48-49 39357.0 50-51 36942.0 52-53 34086.0 54-55 37489.0 56-57 40104.0 58-59 39547.0 60-61 38368.0 62-63 36569.0 64-65 38241.0 66-67 40642.0 68-69 41737.0 70-71 41899.0 72-73 38131.0 74-75 39322.0 76-77 41374.0 78-79 43074.0 80-81 43057.0 82-83 40401.0 84-85 39544.0 86-87 40246.0 88-89 42491.0 90-91 43797.0 92-93 41549.0 94-95 47322.0 96-97 137084.0 98-99 1018488.0 100-101 2233263.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.36548545909807 #Duplication Level Percentage of deduplicated Percentage of total 1 91.07939390226501 79.57195463591798 2 6.459389309197537 11.286553655347019 3 1.412944709004824 3.7032780128721146 4 0.4921505042130024 1.719878708780354 5 0.2147787482611782 0.9382124804067624 6 0.12020498638610276 0.6301060194135684 7 0.06668956229011491 0.4078456189171454 8 0.03993971322794735 0.2791481948205425 9 0.02904821451390089 0.22840302264542728 >10 0.08357816069778841 1.074097540137463 >50 0.001365222478138399 0.08095074699163017 >100 5.169674644042076E-4 0.07957136374998704 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.687189718015993E-5 0.0 0.0 0.0 3 0.0 8.687189718015993E-5 0.0 0.0 0.0 4 0.0 1.520258200652799E-4 0.0 2.1717974295039983E-5 0.0 5 0.0 1.520258200652799E-4 0.0 2.1717974295039983E-5 0.0 6 0.0 1.520258200652799E-4 0.0 2.1717974295039983E-5 0.0 7 0.0 1.520258200652799E-4 0.0 2.1717974295039983E-5 0.0 8 0.0 1.520258200652799E-4 0.0 2.1717974295039983E-5 0.0 9 0.0 2.606156915404798E-4 0.0 2.1717974295039983E-5 0.0 10-11 0.0 2.606156915404798E-4 0.0 2.1717974295039983E-5 0.0 12-13 0.0 2.606156915404798E-4 0.0 2.1717974295039983E-5 0.0 14-15 0.0 3.692055630156797E-4 0.0 2.1717974295039983E-5 2.1717974295039983E-5 16-17 0.0 3.692055630156797E-4 0.0 2.1717974295039983E-5 2.1717974295039983E-5 18-19 0.0 3.800645501631997E-4 0.0 5.429493573759996E-5 2.1717974295039983E-5 20-21 0.0 3.9092353731071973E-4 0.0 8.687189718015993E-5 2.1717974295039983E-5 22-23 0.0 3.9092353731071973E-4 0.0 9.773088432767993E-5 2.1717974295039983E-5 24-25 0.0 4.343594859007997E-4 0.0 1.0858987147519992E-4 2.1717974295039983E-5 26-27 0.0 4.5607746019583965E-4 0.0 1.0858987147519992E-4 2.1717974295039983E-5 28-29 0.0 4.5607746019583965E-4 0.0 2.388977172454398E-4 2.1717974295039983E-5 30-31 0.0 5.429493573759996E-4 0.0 9.664498561292793E-4 2.1717974295039983E-5 32-33 0.0 5.429493573759996E-4 0.0 0.0026930288125849577 2.1717974295039983E-5 34-35 0.0 6.515392288511995E-4 0.0 0.004951698139269116 2.1717974295039983E-5 36-37 0.0 7.601291003263994E-4 0.0 0.008350561116442874 2.1717974295039983E-5 38-39 0.0 7.601291003263994E-4 0.0 0.013291400268564471 3.257696144255997E-5 40-41 0.0 7.818470746214395E-4 0.0 0.019209548263962865 4.3435948590079966E-5 42-43 0.0 8.361420103590394E-4 0.0 0.025323158028016622 4.3435948590079966E-5 44-45 0.0 9.447318818342394E-4 0.0 0.0313390369077427 4.3435948590079966E-5 46-47 0.0 9.990268175718393E-4 0.0 0.03795216008058237 4.3435948590079966E-5 48-49 0.0 0.0010098858047193592 0.0 0.04393546199886589 4.3435948590079966E-5 50-51 0.0 0.0011076166890470391 0.0 0.0512218423748518 4.3435948590079966E-5 52-53 0.0 0.0011076166890470391 0.0 0.057867542509134035 4.3435948590079966E-5 54-55 0.0 0.0011184756761945592 0.0 0.06458925555344891 4.3435948590079966E-5 56-57 0.0 0.0011293346633420792 0.0 0.0712023787262886 4.3435948590079966E-5 58-59 0.0 0.0011293346633420792 0.0 0.07824986138502907 4.3435948590079966E-5 60-61 0.0 0.0011619116247846392 0.0 0.0844069070976729 4.3435948590079966E-5 62-63 0.0 0.001194488586227199 0.0 0.09125892798775802 4.3435948590079966E-5 64-65 0.0 0.0012813604834073591 0.0 0.09730738382892665 4.3435948590079966E-5 66-67 0.0 0.0012813604834073591 0.0 0.10359473738734072 4.3435948590079966E-5 68-69 0.0 0.0012922194705548792 0.0 0.11024043752162296 4.3435948590079966E-5 70-71 0.0 0.001303078457702399 0.0 0.11562649514679288 4.3435948590079966E-5 72-73 0.0 0.0013139374448499189 0.0 0.12035015455596407 1.0858987147519992E-4 74-75 0.0 0.0013790913677350389 0.0 0.12398791525038327 1.0858987147519992E-4 76-77 0.0 0.0014876812392102389 0.0 0.1272130344331967 1.0858987147519992E-4 78-79 0.0 0.0015419761749478388 0.0 0.1296020116056511 1.0858987147519992E-4 80-81 0.0 0.0015528351620953589 0.0 0.13021011488591222 1.0858987147519992E-4 82-83 0.0 0.0015745531363903988 0.0 0.13065533335896054 1.303078457702399E-4 84-85 0.0 0.0015854121235379188 0.0 0.13089423107620599 1.303078457702399E-4 86-87 0.0 0.0015854121235379188 0.0 0.13104625689627125 1.303078457702399E-4 88 0.0 0.0016288480721279987 0.0 0.13104625689627125 1.303078457702399E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4945 0.0 46.708626 1 GTATCAA 9390 0.0 37.59384 1 TCAACGC 10730 0.0 32.304493 4 ATCAACG 10815 0.0 32.129017 3 CAACGCA 10910 0.0 31.77151 5 AACGCAG 11230 0.0 31.091755 6 TATCAAC 11735 0.0 29.90157 2 ACGCAGA 13080 0.0 26.629663 7 CGCAGAG 13440 0.0 25.884954 8 GCAGAGT 15905 0.0 21.89978 9 GAGTACT 9040 0.0 19.358673 12-13 GTACATG 12295 0.0 18.717335 1 AGAGTAC 14195 0.0 18.470373 10-11 CAGAGTA 15690 0.0 18.432621 10-11 TACATGG 12365 0.0 18.133284 2 ACATGGG 12285 0.0 17.699306 3 TATACCG 315 1.551598E-9 17.424175 5 GTACTTT 10235 0.0 16.871914 14-15 AGTACTT 10040 0.0 15.91665 12-13 CATGGGG 8675 0.0 15.427985 4 >>END_MODULE