##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138677_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4083861 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.521683524488225 30.0 18.0 33.0 18.0 33.0 2 31.258010005727424 32.0 31.0 33.0 27.0 34.0 3 31.481097667134115 33.0 31.0 33.0 29.0 34.0 4 32.7273151559272 33.0 33.0 33.0 32.0 34.0 5 32.65643100977237 33.0 33.0 33.0 32.0 34.0 6 36.94781898796262 38.0 37.0 38.0 35.0 38.0 7 37.0035899850656 38.0 38.0 38.0 35.0 38.0 8 37.34557077236468 38.0 38.0 38.0 37.0 38.0 9 37.43799360458155 38.0 38.0 38.0 37.0 38.0 10-11 37.45064303119034 38.0 38.0 38.0 37.0 38.0 12-13 37.48038522858638 38.0 38.0 38.0 37.0 38.0 14-15 37.48894195958188 38.0 38.0 38.0 37.0 38.0 16-17 37.52008111931332 38.0 38.0 38.0 37.5 38.0 18-19 37.52121815605379 38.0 38.0 38.0 38.0 38.0 20-21 37.52729954263321 38.0 38.0 38.0 38.0 38.0 22-23 37.537735049487885 38.0 38.0 38.0 38.0 38.0 24-25 37.549088144709785 38.0 38.0 38.0 38.0 38.0 26-27 37.51954250511481 38.0 38.0 38.0 38.0 38.0 28-29 37.494245260008896 38.0 38.0 38.0 37.0 38.0 30-31 37.49862650085422 38.0 38.0 38.0 38.0 38.0 32-33 37.48633658628659 38.0 38.0 38.0 37.5 38.0 34-35 37.385585310342435 38.0 38.0 38.0 37.0 38.0 36-37 37.42995188904582 38.0 38.0 38.0 37.0 38.0 38-39 37.437467666515374 38.0 38.0 38.0 37.0 38.0 40-41 37.43351532903272 38.0 38.0 38.0 37.0 38.0 42-43 37.40216291841841 38.0 38.0 38.0 37.0 38.0 44-45 37.37058422023768 38.0 38.0 38.0 37.0 38.0 46-47 37.34331785584739 38.0 38.0 38.0 37.0 38.0 48-49 37.287027753275986 38.0 38.0 38.0 37.0 38.0 50-51 37.25527766400948 38.0 38.0 38.0 37.0 38.0 52-53 37.22898464155908 38.0 38.0 38.0 37.0 38.0 54-55 37.19738763310504 38.0 38.0 38.0 37.0 38.0 56-57 37.15113513502209 38.0 38.0 38.0 36.0 38.0 58-59 37.14558335151416 38.0 38.0 38.0 36.0 38.0 60-61 37.14559970350092 38.0 38.0 38.0 36.0 38.0 62-63 37.151013576877396 38.0 38.0 38.0 36.0 38.0 64-65 37.15758521277401 38.0 38.0 38.0 36.0 38.0 66-67 37.15350239908719 38.0 38.0 38.0 36.0 38.0 68-69 37.143602369969486 38.0 38.0 38.0 36.0 38.0 70-71 37.13987121541922 38.0 38.0 38.0 36.0 38.0 72-73 37.1294437768359 38.0 38.0 38.0 36.0 38.0 74-75 37.12590008313921 38.0 38.0 38.0 36.0 38.0 76-77 37.109143420765776 38.0 38.0 38.0 36.0 38.0 78-79 37.09280234306812 38.0 38.0 38.0 36.0 38.0 80-81 37.080022948334204 38.0 38.0 38.0 36.0 38.0 82-83 37.03040513483096 38.0 38.0 38.0 36.0 38.0 84-85 37.01735920147722 38.0 38.0 38.0 36.0 38.0 86-87 37.001426443781284 38.0 38.0 38.0 36.0 38.0 88-89 36.9882898514891 38.0 38.0 38.0 36.0 38.0 90-91 36.975038365703696 38.0 38.0 38.0 36.0 38.0 92-93 36.95363722047485 38.0 38.0 38.0 35.0 38.0 94-95 36.936029033611206 38.0 38.0 38.0 35.0 38.0 96-97 36.92482653379285 38.0 38.0 38.0 35.0 38.0 98-99 36.94217521289236 38.0 38.0 38.0 35.0 38.0 100 35.492630296895335 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 2.0 20 4.0 21 45.0 22 170.0 23 539.0 24 1367.0 25 2741.0 26 5069.0 27 8639.0 28 13956.0 29 20449.0 30 27599.0 31 36362.0 32 46692.0 33 62833.0 34 94208.0 35 174419.0 36 577992.0 37 3010774.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.0487430889543 22.05427657797364 13.498329154689642 24.39865117838242 2 14.476310030006584 21.329703384673255 41.39934080040907 22.794645784911094 3 17.896758164947652 26.69296388266992 31.01562283827261 24.394655114109824 4 12.827615827277178 18.3918355693301 39.02094121224987 29.759607391142843 5 13.585599509875582 37.523755093525466 35.46318055389251 13.42746484270645 6 29.60083607155092 38.787265286453184 18.726225011086324 12.885673630909572 7 26.121334687933796 33.24988289268415 23.726395193176263 16.90238722620579 8 24.080814699618816 37.71286534972664 21.118544436257746 17.087775514396792 9 26.195014962556268 17.020975983266815 21.418775026867955 35.365234027308965 10-11 24.333773847836643 27.14665117152616 28.800343596415257 19.719231384221942 12-13 25.14518736068637 24.954644636533907 28.850222865077924 21.049945137701798 14-15 22.413189381323214 25.992473788897318 26.558225169759698 25.03611166001977 16-17 21.883923081613208 29.124999602092235 27.14868356195277 21.842393754341785 18-19 21.947049617996303 28.344990194328357 28.726663321792785 20.981296865882555 20-21 22.935547078738573 27.45727160221146 28.54292233395318 21.06425898509679 22-23 22.67072931380876 27.34381016666591 28.40222312635684 21.58323739316849 24-25 22.3876952915744 27.49656389682568 28.57595027767387 21.53979053392605 26-27 22.251429626659817 27.624827365952832 28.52552461279644 21.59821839459092 28-29 22.331073284101272 27.700678798771666 28.468412802557413 21.49983511456965 30-31 22.592044505876665 27.430886301454528 28.42323844802334 21.55383074464547 32-33 22.430147952920798 27.534601754023125 28.32279019617891 21.71246009687717 34-35 22.562497704985745 27.678426422397468 28.232298077560515 21.526777795056272 36-37 22.65470022489659 27.455063365214098 28.210368502303524 21.679867907585788 38-39 22.295850605932337 27.79223669303042 28.323847120525453 21.588065580511792 40-41 22.48272461137423 27.575108506003694 28.321451400761706 21.620715481860373 42-43 22.383825572311213 27.718148756644727 28.032888076962177 21.865137594081883 44-45 22.37715420264949 27.75421434364029 27.98619073162175 21.88244072208847 46-47 22.48070058350324 27.770178364903312 27.84363888103013 21.905482170563314 48-49 22.576716807271282 27.951270294069502 27.642132083150283 21.82988081550893 50-51 22.52803768873046 28.005007622763955 27.666998306821043 21.799956381684535 52-53 22.75147485629698 27.870550778355994 27.58459857818577 21.793375787161253 54-55 22.741929152549744 27.878074889571064 27.497428585220586 21.882567372658606 56-57 22.703385318955466 28.10412152499785 27.326110844803058 21.866382311243626 58-59 22.620758734429977 28.033394434116833 27.546989133213945 21.79885769823925 60-61 22.70170502924522 28.139206673901107 27.42028923855807 21.738799058295605 62-63 22.66307836242643 28.124407014023756 27.594232862464658 21.61828176108516 64-65 22.864934176450337 28.035993842245976 27.41944164629202 21.67963033501167 66-67 22.87414182516267 28.39124511139645 27.13203325300598 21.602579810434904 68-69 22.834822407250517 27.946860074196756 27.3889134828489 21.829404035703828 70-71 22.846726032237154 27.897416019785474 27.34233593000534 21.913522017972035 72-73 22.81869668341569 28.197940964377683 27.174386726616223 21.808975625590403 74-75 22.61589073754722 28.157890286155514 27.24870633120604 21.97751264509123 76-77 22.730134255906947 27.770283765622782 27.423140304993694 22.07644167347658 78-79 22.55691508090528 27.834736902440966 27.47332995375033 22.13501806290342 80-81 22.654107121968227 27.804643556827408 27.519259579430493 22.02198974177387 82-83 22.772335578047194 27.556544114254265 27.66002095120416 22.01109935649438 84-85 22.711018444819132 27.58383211231746 27.63583378425046 22.069315658612947 86-87 22.537908653464847 27.761485187531704 27.559675823589657 22.14093033541379 88-89 22.789885783389447 27.575393499261676 27.417128874644792 22.217591842704085 90-91 22.81099657779349 27.605077718607507 27.465009637339687 22.118916066259317 92-93 22.784305729102744 27.670927471609936 27.48955253978056 22.055214259506762 94-95 22.506865054962827 27.821698986169462 27.541015891192057 22.13042006767565 96-97 22.640115293392817 27.883664631710225 27.577866041525574 21.898354033371387 98-99 23.755900343509133 29.761788202123203 27.776126052512453 18.706185401855212 100 30.087736721276105 40.780687435661925 29.131575843061974 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 864.0 1 797.5 2 881.0 3 1108.5 4 1350.5 5 1791.5 6 2236.0 7 2725.0 8 3368.0 9 3830.5 10 3967.0 11 4114.0 12 4623.5 13 5815.5 14 8119.5 15 10805.5 16 12805.5 17 13930.5 18 14084.5 19 13540.5 20 12794.0 21 12603.5 22 13797.0 23 16644.0 24 21139.5 25 27482.0 26 35427.0 27 44231.0 28 53073.5 29 62480.5 30 71562.5 31 80189.0 32 89868.0 33 99726.0 34 108767.0 35 117180.5 36 126181.0 37 134166.0 38 140400.0 39 145726.0 40 150994.5 41 155585.0 42 158210.5 43 160689.5 44 164532.0 45 169025.5 46 173272.5 47 177867.0 48 179771.0 49 176319.0 50 170099.0 51 166119.5 52 157559.5 53 144684.0 54 134740.5 55 125146.5 56 114426.5 57 102690.0 58 90871.5 59 77993.0 60 65808.0 61 55308.5 62 45048.0 63 36763.0 64 29530.5 65 22298.5 66 16896.0 67 11790.0 68 7765.5 69 5664.5 70 4071.0 71 2891.5 72 2102.0 73 1372.0 74 843.5 75 553.0 76 369.0 77 231.5 78 143.5 79 78.0 80 39.0 81 20.0 82 11.5 83 9.0 84 7.5 85 6.0 86 4.0 87 1.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.010382331817855701 3 7.835722126683548E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 7.346061445886095E-5 22-23 0.0 24-25 9.795562928349252E-5 26-27 2.3266815141602447E-4 28-29 0.001629227708091884 30-31 0.0023298138429690756 32-33 0.002150485837760467 34-35 5.544970139103585E-4 36-37 1.2371908986793854E-5 38-39 2.4892201211130048E-5 40-41 1.5034583300236367E-4 42-43 0.0017153087013322145 44-45 1.9066516083559643E-4 46-47 3.719181292774593E-4 48-49 9.704956385926001E-4 50-51 0.00105716523101018 52-53 0.0 54-55 0.002943977695788441 56-57 0.05635027609896082 58-59 0.07317815890558207 60-61 0.04888287570312572 62-63 0.007589644425158682 64-65 0.0 66-67 0.0 68-69 9.900434162324972E-5 70-71 0.0014864039771596879 72-73 0.0076813010853447414 74-75 0.012230985737271136 76-77 0.013195837420213784 78-79 0.0038111906382865958 80-81 0.00820434200876013 82-83 0.04864622398907256 84-85 0.04175010791341452 86-87 0.00937656130241836 88-89 0.002185840815120483 90-91 0.0028168789935625565 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 24.0 20-21 89.0 22-23 215.0 24-25 315.0 26-27 1019.0 28-29 2679.0 30-31 8279.0 32-33 10304.0 34-35 14217.0 36-37 22829.0 38-39 26739.0 40-41 26006.0 42-43 29150.0 44-45 34221.0 46-47 35333.0 48-49 33458.0 50-51 31408.0 52-53 29420.0 54-55 32186.0 56-57 34683.0 58-59 33959.0 60-61 32823.0 62-63 31749.0 64-65 33294.0 66-67 35338.0 68-69 36494.0 70-71 36354.0 72-73 32991.0 74-75 34387.0 76-77 36047.0 78-79 37107.0 80-81 36991.0 82-83 34907.0 84-85 34609.0 86-87 35378.0 88-89 37515.0 90-91 37798.0 92-93 36861.0 94-95 41484.0 96-97 123111.0 98-99 928428.0 100-101 1983662.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 90.12382991170598 #Duplication Level Percentage of deduplicated Percentage of total 1 93.03140521673329 83.84346540199867 2 5.216507752940794 9.402633149182634 3 1.0373396364169176 2.804670628593276 4 0.3310090285603676 1.1932720555685439 5 0.14417323194905135 0.649672191699862 6 0.08343253382856616 0.4511555692721011 7 0.04156952339194543 0.2622483258980462 8 0.02753769663757929 0.19854421503402828 9 0.01970853202681607 0.15985875493747637 >10 0.06542706840316105 0.895616127557162 >50 0.0014772366874074134 0.0839411608087439 >100 4.1254242411745205E-4 0.05492241944948852 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.8973263291772174E-5 0.0 0.0 0.0 3 0.0 4.8973263291772174E-5 0.0 0.0 0.0 4 0.0 1.4691978987531651E-4 0.0 0.0 0.0 5 0.0 1.4691978987531651E-4 0.0 0.0 2.4486631645886087E-5 6 2.4486631645886087E-5 1.4691978987531651E-4 0.0 0.0 2.4486631645886087E-5 7 2.4486631645886087E-5 1.4691978987531651E-4 0.0 0.0 4.8973263291772174E-5 8 2.4486631645886087E-5 1.4691978987531651E-4 0.0 0.0 4.8973263291772174E-5 9 2.4486631645886087E-5 1.958930531670887E-4 0.0 0.0 4.8973263291772174E-5 10-11 2.4486631645886087E-5 1.958930531670887E-4 0.0 2.4486631645886087E-5 4.8973263291772174E-5 12-13 2.4486631645886087E-5 1.958930531670887E-4 0.0 4.8973263291772174E-5 4.8973263291772174E-5 14-15 4.8973263291772174E-5 4.774893170947787E-4 0.0 4.8973263291772174E-5 6.121657911471521E-5 16-17 4.8973263291772174E-5 4.897326329177217E-4 0.0 7.345989493765826E-5 7.345989493765826E-5 18-19 4.8973263291772174E-5 5.019759487406648E-4 0.0 8.57032107606013E-5 8.57032107606013E-5 20-21 4.8973263291772174E-5 5.387058962094939E-4 0.0 9.794652658354435E-5 9.794652658354435E-5 22-23 4.8973263291772174E-5 5.6319252785538E-4 0.0 9.794652658354435E-5 9.794652658354435E-5 24-25 6.121657911471521E-5 5.6319252785538E-4 0.0 9.794652658354435E-5 9.794652658354435E-5 26-27 7.345989493765826E-5 5.6319252785538E-4 0.0 1.4691978987531651E-4 1.2243315822943042E-4 28-29 7.345989493765826E-5 5.6319252785538E-4 0.0 3.7954279051123435E-4 1.2243315822943042E-4 30-31 7.345989493765826E-5 5.6319252785538E-4 0.0 0.0011631150031795891 1.2243315822943042E-4 32-33 8.57032107606013E-5 5.6319252785538E-4 0.0 0.0032322353772569635 1.2243315822943042E-4 34-35 9.794652658354435E-5 6.121657911471521E-4 0.0 0.005607438646907914 1.2243315822943042E-4 36-37 9.794652658354435E-5 6.733823702618673E-4 0.0 0.009562029657718516 1.2243315822943042E-4 38-39 9.794652658354435E-5 7.713288968454117E-4 0.0 0.015402091305262348 1.2243315822943042E-4 40-41 9.794652658354435E-5 9.060053708977852E-4 0.0 0.021805345480661563 1.2243315822943042E-4 42-43 9.794652658354435E-5 9.427353183666143E-4 0.0 0.028024949918716627 1.2243315822943042E-4 44-45 9.794652658354435E-5 0.0010651684765960448 0.0 0.03477101693715824 1.2243315822943042E-4 46-47 9.794652658354435E-5 0.0011508716873566461 0.0 0.04183541016699638 1.2243315822943042E-4 48-49 9.794652658354435E-5 0.0011508716873566461 0.0 0.049009993239241004 1.2243315822943042E-4 50-51 1.1018984240648738E-4 0.0012977914772319627 0.0 0.05607438646907914 1.2243315822943042E-4 52-53 1.2243315822943042E-4 0.0012977914772319627 0.0 0.06282045348752076 1.3467647405237347E-4 54-55 1.2243315822943042E-4 0.0013590080563466778 0.0 0.06870948839835636 1.4691978987531651E-4 56-57 1.2243315822943042E-4 0.001395738003815507 0.0 0.07568817841743389 1.4691978987531651E-4 58-59 1.2243315822943042E-4 0.001395738003815507 0.0 0.08293622138461618 1.5916310569825956E-4 60-61 1.2243315822943042E-4 0.0014691978987531652 0.0 0.09041688735243437 1.714064215212026E-4 62-63 1.2243315822943042E-4 0.0014936845303990514 0.0 0.09749352389809546 1.714064215212026E-4 64-65 1.2243315822943042E-4 0.001665090951920254 0.0 0.10452118718046476 1.714064215212026E-4 66-67 1.3467647405237347E-4 0.00168957758356614 0.0 0.11181820341093882 1.8364973734414565E-4 68-69 1.4691978987531651E-4 0.001714064215212026 0.0 0.11760929179519088 1.958930531670887E-4 70-71 1.4691978987531651E-4 0.001738550846857912 0.0 0.12303308070475465 1.958930531670887E-4 72-73 1.4691978987531651E-4 0.0017507941626808553 0.0 0.12750189098012885 1.958930531670887E-4 74-75 1.4691978987531651E-4 0.0018364973734414564 0.0 0.13057496325168755 1.958930531670887E-4 76-77 1.4691978987531651E-4 0.0018854706367332286 0.0 0.1340275783137575 1.958930531670887E-4 78-79 1.4691978987531651E-4 0.0018977139525561716 0.0 0.13653745805746081 1.958930531670887E-4 80-81 1.4691978987531651E-4 0.0019099572683791148 0.0 0.1372965436384833 1.958930531670887E-4 82-83 1.4691978987531651E-4 0.0019344439000250008 0.0 0.13796992600874514 1.958930531670887E-4 84-85 1.4691978987531651E-4 0.001958930531670887 0.0 0.13831273885178758 1.958930531670887E-4 86-87 1.4691978987531651E-4 0.001983417163316773 0.0 0.13843517201001698 2.0813636899003174E-4 88 1.4691978987531651E-4 0.0021058503215462035 0.0 0.13844741532583993 2.2037968481297479E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4720 0.0 51.64766 1 GTATCAA 9065 0.0 38.35048 1 TCAACGC 10710 0.0 32.181374 4 ATCAACG 10860 0.0 31.697842 3 CAACGCA 11075 0.0 31.12077 5 TATCAAC 11345 0.0 30.49372 2 AACGCAG 11410 0.0 30.207054 6 ACGCAGA 12925 0.0 26.764744 7 CGCAGAG 13860 0.0 25.020359 8 CGTCGAA 210 1.2148998E-4 24.980215 94 GCAGAGT 15655 0.0 22.20569 9 GTACATG 12965 0.0 21.255219 1 TACATGG 13345 0.0 20.618206 2 ACATGGG 13270 0.0 20.318409 3 GAGTACT 8435 0.0 19.726866 12-13 CAGAGTA 15280 0.0 19.379677 10-11 AGAGTAC 14360 0.0 18.569479 10-11 CATGGGG 9245 0.0 18.021425 4 GTGGTAT 2530 0.0 17.762745 1 TGGTATC 2230 0.0 17.680838 2 >>END_MODULE