##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138676_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5216880 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.706600880219593 28.0 18.0 33.0 18.0 33.0 2 30.5396190826701 32.0 27.0 33.0 27.0 33.0 3 28.692502798607595 31.0 28.0 33.0 18.0 33.0 4 31.98309775191302 33.0 32.0 33.0 31.0 33.0 5 32.73452101639294 33.0 33.0 33.0 32.0 34.0 6 37.086538122402665 38.0 37.0 38.0 36.0 38.0 7 37.0855842955943 38.0 38.0 38.0 35.0 38.0 8 37.37354740764595 38.0 38.0 38.0 37.0 38.0 9 37.48015978899265 38.0 38.0 38.0 37.0 38.0 10-11 37.44701286976124 38.0 38.0 38.0 37.0 38.0 12-13 37.55491606094064 38.0 38.0 38.0 37.5 38.0 14-15 37.52975034886752 38.0 38.0 38.0 37.5 38.0 16-17 37.571593461992606 38.0 38.0 38.0 38.0 38.0 18-19 37.56151703700296 38.0 38.0 38.0 38.0 38.0 20-21 37.5653113513888 38.0 38.0 38.0 38.0 38.0 22-23 37.57306599020394 38.0 38.0 38.0 38.0 38.0 24-25 37.579516444561364 38.0 38.0 38.0 38.0 38.0 26-27 37.544648286763426 38.0 38.0 38.0 38.0 38.0 28-29 37.52043729018867 38.0 38.0 38.0 38.0 38.0 30-31 37.52343389546413 38.0 38.0 38.0 38.0 38.0 32-33 37.51161635858635 38.0 38.0 38.0 38.0 38.0 34-35 37.406787680385996 38.0 38.0 38.0 37.0 38.0 36-37 37.44824249081238 38.0 38.0 38.0 37.0 38.0 38-39 37.45514691542991 38.0 38.0 38.0 37.0 38.0 40-41 37.45067111581807 38.0 38.0 38.0 37.5 38.0 42-43 37.41816777585345 38.0 38.0 38.0 37.0 38.0 44-45 37.389146807192766 38.0 38.0 38.0 37.0 38.0 46-47 37.36464117713669 38.0 38.0 38.0 37.0 38.0 48-49 37.30995112837656 38.0 38.0 38.0 37.0 38.0 50-51 37.28426169837533 38.0 38.0 38.0 37.0 38.0 52-53 37.266627618502085 38.0 38.0 38.0 37.0 38.0 54-55 37.2406115207623 38.0 38.0 38.0 37.0 38.0 56-57 37.199386016584626 38.0 38.0 38.0 37.0 38.0 58-59 37.19404935210819 38.0 38.0 38.0 37.0 38.0 60-61 37.19486801643737 38.0 38.0 38.0 37.0 38.0 62-63 37.20264850793933 38.0 38.0 38.0 37.0 38.0 64-65 37.209897911643495 38.0 38.0 38.0 37.0 38.0 66-67 37.209527655368035 38.0 38.0 38.0 37.0 38.0 68-69 37.2021529583247 38.0 38.0 38.0 37.0 38.0 70-71 37.19699538689921 38.0 38.0 38.0 36.0 38.0 72-73 37.18880416106694 38.0 38.0 38.0 36.0 38.0 74-75 37.18763350094925 38.0 38.0 38.0 36.0 38.0 76-77 37.17528516152831 38.0 38.0 38.0 36.0 38.0 78-79 37.1621180158819 38.0 38.0 38.0 36.0 38.0 80-81 37.15665716293968 38.0 38.0 38.0 36.0 38.0 82-83 37.11051604326957 38.0 38.0 38.0 36.0 38.0 84-85 37.103568671273095 38.0 38.0 38.0 36.0 38.0 86-87 37.091096063326155 38.0 38.0 38.0 36.0 38.0 88-89 37.07672956043764 38.0 38.0 38.0 36.0 38.0 90-91 37.06922602942079 38.0 38.0 38.0 36.0 38.0 92-93 37.054813490455075 38.0 38.0 38.0 36.0 38.0 94-95 37.04184998285277 38.0 38.0 38.0 36.0 38.0 96-97 37.033324123737756 38.0 38.0 38.0 36.0 38.0 98-99 37.048096179460515 38.0 38.0 38.0 36.0 38.0 100 35.7081681670251 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 5.0 20 10.0 21 47.0 22 233.0 23 684.0 24 1632.0 25 3451.0 26 6439.0 27 10761.0 28 17479.0 29 25560.0 30 34142.0 31 43979.0 32 56483.0 33 76097.0 34 115548.0 35 219942.0 36 782614.0 37 3821773.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.6619742068056 17.587101869316527 11.562715646133322 23.18820827774455 2 14.5374070163412 20.415400493970296 42.579921280672814 22.467271209015685 3 19.06538663031254 26.135732593216073 30.145408198962166 24.65347257750922 4 12.614397877658678 17.624231341338117 39.96526659612642 29.796104184876786 5 13.474490500069006 37.775988713560594 35.56813651071138 13.181384275659013 6 29.69088804036129 37.99167318397203 19.329905997454418 12.987532778212266 7 26.43131526889635 32.86199797580163 23.752568585054668 16.95411817024735 8 23.92966677401052 37.43637959853399 21.612036312892 17.021917314563495 9 26.13941666283296 17.148372207142966 21.535496311971908 35.17671481805217 10-11 24.24560273573477 26.729050696968304 29.34696600266826 19.678380564628668 12-13 25.20591809664014 24.40996342641579 29.394034365367805 20.99008411157627 14-15 22.354338225146066 25.64339221910414 27.036849611261903 24.965419944487895 16-17 21.861275321648186 28.72471668890218 27.67471170508043 21.739296284369203 18-19 21.912541595743047 27.9363910996611 29.320283387772 20.83078391682385 20-21 22.66191128885633 27.190666823466852 29.18178959427568 20.965632293401136 22-23 22.414885915675065 27.082740883849805 29.036489520796664 21.465883679678463 24-25 22.176955136029864 27.162638397614163 29.130328471690454 21.530077994665525 26-27 22.109202844008593 27.3133739185716 29.10108822477223 21.476335012647578 28-29 22.105317964834818 27.373517492457534 29.11778671529028 21.403377827417366 30-31 22.34842072574104 27.232322964781623 28.982359143967827 21.436897165509507 32-33 22.121201809350673 27.427133415772296 28.95150443417033 21.5001603407067 34-35 22.28191606145129 27.42605168364468 28.912305932001814 21.37972632290221 36-37 22.248250531318686 27.34110045912468 28.927213230229142 21.483435779327493 38-39 22.067686061391942 27.49375080436994 29.03736404630257 21.401199087935545 40-41 22.359770396473913 27.332745808317622 28.86439305423551 21.443090740972956 42-43 22.24717750571707 27.406233640178247 28.74322296455216 21.603365889552524 44-45 22.26791720777632 27.497984398448327 28.64399855811718 21.590099835658176 46-47 22.34340847591423 27.536688235416545 28.406359270902758 21.71354401776646 48-49 22.27211514659479 27.612838800366323 28.406356044831988 21.708690008206897 50-51 22.23339542954496 27.76620528665898 28.363968508941884 21.63643077485418 52-53 22.454072845326497 27.635808581210767 28.237443697527397 21.67267487593534 54-55 22.402532264506554 27.544811273872416 28.262092901204017 21.790563560417013 56-57 22.406682936110585 27.63912781291944 28.275509873120235 21.678679377849743 58-59 22.39409858146108 27.660857993314806 28.279894100924913 21.6651493242992 60-61 22.47892555779421 27.577591429324364 28.29550310407714 21.64797990880428 62-63 22.447760707655696 27.603775529270063 28.332900602458714 21.615563160615523 64-65 22.467039420242312 27.569545231608416 28.253322559319553 21.710092788829723 66-67 22.64650783301752 27.552412458400976 28.165521472313458 21.635558236268047 68-69 22.529260531484685 27.540541405992624 28.264037049680894 21.666161012841798 70-71 22.431139235262393 27.525554106581396 28.311298977265842 21.732007680890373 72-73 22.635337462002507 27.609555868417342 28.151010823235247 21.60409584634491 74-75 22.283513392272 27.691957982699783 28.212473939033693 21.81205468599452 76-77 22.396174811045086 27.506426213768382 28.17174359153509 21.925655383651442 78-79 22.32443963680168 27.668384937409918 28.076331508085584 21.930843917702816 80-81 22.36821148857342 27.63737154003158 28.080161481196463 21.914255490198535 82-83 22.347627461465137 27.6382489014949 28.11339595006161 21.900727686978357 84-85 22.432856859120427 27.57215548745129 28.090927488365956 21.904060165062326 86-87 22.27414784308595 27.599500471182047 28.13317102675973 21.99318065897227 88-89 22.334710469190103 27.648962909292596 28.05308720427531 21.96323941724199 90-91 22.383772213140567 27.629322562401175 28.086217019236788 21.900688205221467 92-93 22.38259240399328 27.678559075488067 28.03004080968991 21.90880771082874 94-95 22.33065357415373 27.731191309440785 28.031640900132558 21.906514216272928 96-97 22.434887507747217 27.81830781878341 28.058795568301715 21.688009105167655 98-99 23.437435884196837 29.77080680948894 28.298212026799895 18.493545279514333 100 29.721903964372036 40.655843785090305 29.622252250537656 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 621.0 1 654.0 2 1058.0 3 1590.0 4 2004.5 5 2796.0 6 3578.0 7 4369.5 8 5546.5 9 6276.0 10 6146.0 11 6019.0 12 6529.0 13 7843.5 14 10159.0 15 12873.0 16 15473.0 17 17551.5 18 18191.5 19 17401.0 20 16360.0 21 15984.5 22 17097.0 23 20301.0 24 25427.5 25 32775.0 26 42720.0 27 54133.5 28 65528.0 29 77657.0 30 89899.0 31 101695.0 32 113644.5 33 126560.5 34 139520.0 35 150278.5 36 162273.0 37 173043.0 38 180569.0 39 187934.5 40 196054.0 41 203256.5 42 207379.0 43 211298.5 44 215322.5 45 217924.5 46 218333.0 47 217696.5 48 216523.0 49 213448.5 50 208963.5 51 201978.5 52 192523.5 53 182337.5 54 170490.5 55 157083.5 56 142659.0 57 127710.0 58 113213.0 59 97372.5 60 80956.5 61 65714.0 62 51905.5 63 39593.0 64 29445.5 65 21689.5 66 15716.0 67 11982.5 68 9167.5 69 6701.5 70 4887.5 71 3448.0 72 2343.5 73 1598.0 74 1077.0 75 699.5 76 448.0 77 287.5 78 182.0 79 112.5 80 77.0 81 51.0 82 31.5 83 24.0 84 17.5 85 11.5 86 7.5 87 4.5 88 3.0 89 2.5 90 3.5 91 4.0 92 4.0 93 2.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007130698808483231 3 9.392587140206408E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 4.7921794698047654E-5 22-23 0.0 24-25 1.0543564859793592E-4 26-27 2.4923164758798404E-4 28-29 0.001725934622363587 30-31 0.0026869761116308064 32-33 0.0021628224660155708 34-35 4.72050833516534E-4 36-37 0.0 38-39 9.71314555750833E-6 40-41 2.1485243641686296E-4 42-43 0.0020425576710757436 44-45 2.569842131632651E-4 46-47 4.5808114389633267E-4 48-49 9.331632367399009E-4 50-51 9.501853215169365E-4 52-53 0.0 54-55 0.0027972002177512785 56-57 0.050392240771875735 58-59 0.06623935827343012 60-61 0.04334274350121213 62-63 0.007109400341124263 64-65 0.0 66-67 0.0 68-69 1.5196728708758927E-4 70-71 0.0014575987802638057 72-73 0.007036129084647177 74-75 0.011185677331834171 76-77 0.012439557160779248 78-79 0.0036416378038420416 80-81 0.007060221504675787 82-83 0.04468743544083121 84-85 0.03704476854998891 86-87 0.008614684137925478 88-89 0.002095415398740787 90-91 0.0024578586215505526 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 29.0 20-21 112.0 22-23 224.0 24-25 327.0 26-27 1062.0 28-29 2825.0 30-31 8340.0 32-33 10629.0 34-35 14616.0 36-37 24087.0 38-39 28064.0 40-41 27650.0 42-43 31228.0 44-45 37010.0 46-47 38261.0 48-49 37165.0 50-51 34492.0 52-53 32155.0 54-55 36026.0 56-57 38740.0 58-59 39661.0 60-61 38618.0 62-63 37658.0 64-65 38751.0 66-67 41876.0 68-69 43933.0 70-71 43593.0 72-73 40721.0 74-75 41039.0 76-77 43041.0 78-79 45269.0 80-81 45526.0 82-83 42850.0 84-85 41184.0 86-87 43100.0 88-89 45820.0 90-91 46225.0 92-93 45736.0 94-95 52184.0 96-97 160359.0 98-99 1209544.0 100-101 2627150.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.4314925752171 #Duplication Level Percentage of deduplicated Percentage of total 1 92.48881387522354 82.71412671372691 2 5.596053830855224 10.009268932492885 3 1.134409941508197 3.0435592278372834 4 0.38575902945148655 1.3799602311285433 5 0.15929767538942216 0.7123114436919227 6 0.0783363831081584 0.4203443798583978 7 0.04570098750301749 0.2860975267189339 8 0.027417022180225382 0.1961556172436311 9 0.01892969011214168 0.15236193966436437 >10 0.06326804969008068 0.8788633117080277 >50 0.0013794320516501391 0.08070507947218174 >100 6.043449452470644E-4 0.11124594834479734 >500 2.9737981554774028E-5 0.01499964811212392 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.9168545184094708E-5 0.0 1.9168545184094708E-5 0.0 3 0.0 1.9168545184094708E-5 0.0 1.9168545184094708E-5 0.0 4 0.0 1.9168545184094708E-5 0.0 1.9168545184094708E-5 0.0 5 0.0 1.9168545184094708E-5 0.0 3.8337090368189415E-5 0.0 6 1.9168545184094708E-5 1.9168545184094708E-5 0.0 3.8337090368189415E-5 0.0 7 1.9168545184094708E-5 1.9168545184094708E-5 0.0 3.8337090368189415E-5 0.0 8 1.9168545184094708E-5 3.8337090368189415E-5 0.0 3.8337090368189415E-5 0.0 9 1.9168545184094708E-5 1.3417981628866294E-4 0.0 3.8337090368189415E-5 0.0 10-11 1.9168545184094708E-5 1.3417981628866294E-4 0.0 3.8337090368189415E-5 0.0 12-13 1.9168545184094708E-5 1.5334836147275766E-4 0.0 9.584272592047353E-5 0.0 14-15 1.9168545184094708E-5 1.9168545184094707E-4 0.0 1.1501127110456825E-4 0.0 16-17 3.8337090368189415E-5 2.1085399702504179E-4 0.0 1.1501127110456825E-4 0.0 18-19 4.792136296023677E-5 2.4919108739323117E-4 0.0 1.1501127110456825E-4 1.9168545184094708E-5 20-21 5.7505635552284126E-5 2.875281777614206E-4 0.0 1.1501127110456825E-4 3.8337090368189415E-5 22-23 5.7505635552284126E-5 3.2586526812961004E-4 0.0 1.1501127110456825E-4 3.8337090368189415E-5 24-25 5.7505635552284126E-5 3.929551762739415E-4 0.0 1.1501127110456825E-4 3.8337090368189415E-5 26-27 5.7505635552284126E-5 4.2170799405008357E-4 0.0 1.437640888807103E-4 3.8337090368189415E-5 28-29 5.7505635552284126E-5 4.312922666421309E-4 0.0 3.3544954072165737E-4 3.8337090368189415E-5 30-31 5.7505635552284126E-5 4.7921362960236767E-4 0.0 0.001437640888807103 3.8337090368189415E-5 32-33 5.7505635552284126E-5 4.7921362960236767E-4 0.0 0.0036324393123859473 3.8337090368189415E-5 34-35 5.7505635552284126E-5 5.271349925626044E-4 0.0 0.006919844811458189 5.7505635552284126E-5 36-37 5.7505635552284126E-5 5.750563555228412E-4 0.0 0.010878149391973747 5.7505635552284126E-5 38-39 5.7505635552284126E-5 5.94224900706936E-4 0.0 0.01713667939458067 6.708990814433148E-5 40-41 6.708990814433148E-5 6.708990814433147E-4 0.0 0.02373065893790925 7.667418073637883E-5 42-43 8.625845332842618E-5 6.996518992194568E-4 0.0 0.03003711030347641 7.667418073637883E-5 44-45 9.584272592047353E-5 7.85910352547883E-4 0.0 0.03744575301712901 7.667418073637883E-5 46-47 9.584272592047353E-5 8.434159881001671E-4 0.0 0.04516109245372713 9.584272592047353E-5 48-49 9.584272592047353E-5 8.625845332842618E-4 0.0 0.05347065679103219 9.584272592047353E-5 50-51 9.584272592047353E-5 0.0010159328947570196 0.0 0.0613872659520633 9.584272592047353E-5 52-53 9.584272592047353E-5 0.0010159328947570196 0.0 0.06916011102421371 9.584272592047353E-5 54-55 9.584272592047353E-5 0.0010446857125331614 0.0 0.07672210209933908 9.584272592047353E-5 56-57 9.584272592047353E-5 0.0010734385303093035 0.0 0.08213721611384582 1.0542699851252089E-4 58-59 9.584272592047353E-5 0.001083022802901351 0.0 0.0882040606646118 1.1501127110456825E-4 60-61 1.1501127110456825E-4 0.0010926070754933984 0.0 0.09397379276502431 1.1501127110456825E-4 62-63 1.3417981628866294E-4 0.0010926070754933984 0.0 0.09962851359433224 1.1501127110456825E-4 64-65 1.3417981628866294E-4 0.001245955436966156 0.0 0.10475609943107758 1.1501127110456825E-4 66-67 1.3417981628866294E-4 0.001245955436966156 0.0 0.10988368526782291 1.1501127110456825E-4 68-69 1.3417981628866294E-4 0.0012651239821502508 0.0 0.11541381055343423 1.1501127110456825E-4 70-71 1.3417981628866294E-4 0.0012842925273343455 0.0 0.12064682338869209 1.1501127110456825E-4 72-73 1.3417981628866294E-4 0.001332213890294582 0.0 0.12436552115440647 1.3417981628866294E-4 74-75 1.3417981628866294E-4 0.0013609667080707244 0.0 0.1275474996549662 1.3417981628866294E-4 76-77 1.437640888807103E-4 0.0014280566162150558 0.0 0.13084448942663046 1.3417981628866294E-4 78-79 1.5334836147275766E-4 0.0014951465243593872 0.0 0.13303928785020933 1.3417981628866294E-4 80-81 1.7251690665685238E-4 0.0015143150695434819 0.0 0.13389228811090154 1.5334836147275766E-4 82-83 1.7251690665685238E-4 0.0015334836147275765 0.0 0.13425649046939933 1.7251690665685238E-4 84-85 1.7251690665685238E-4 0.0015526521599116714 0.0 0.13440025455828003 1.8210117924889974E-4 86-87 1.7251690665685238E-4 0.0015526521599116714 0.0 0.13452485010197665 1.9168545184094707E-4 88 1.7251690665685238E-4 0.00162932634064805 0.0 0.13452485010197665 2.1085399702504179E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5880 0.0 49.3763 1 GTATCAA 10960 0.0 38.11146 1 TCAACGC 12250 0.0 32.86902 4 ATCAACG 12480 0.0 32.2289 3 TATCAAC 12845 0.0 31.65056 2 CAACGCA 12745 0.0 31.558783 5 AACGCAG 13145 0.0 30.631077 6 ACGCAGA 14940 0.0 27.03694 7 CGCAGAG 15275 0.0 26.443985 8 GCAGAGT 18595 0.0 21.676487 9 GTACATG 14455 0.0 21.271996 1 TACATGG 13995 0.0 21.266388 2 ACATGGG 14075 0.0 20.19865 3 GAGTACT 11380 0.0 19.782187 12-13 CAGAGTA 18245 0.0 18.966488 10-11 GATCAAC 2260 0.0 18.785986 1 AGAGTAC 16640 0.0 18.669914 10-11 CATGGGG 10110 0.0 18.15306 4 GTGGTAT 3230 0.0 17.924145 1 GTACTTT 12880 0.0 17.428589 14-15 >>END_MODULE