##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138675_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5384119 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.819107267131354 28.0 18.0 33.0 18.0 33.0 2 30.738476434120418 32.0 29.0 33.0 27.0 33.0 3 28.876356930446747 31.0 28.0 33.0 18.0 33.0 4 32.00496515771661 33.0 32.0 33.0 31.0 33.0 5 32.75443113348721 33.0 33.0 33.0 32.0 34.0 6 37.08133828394209 38.0 38.0 38.0 36.0 38.0 7 37.036483034643176 38.0 38.0 38.0 35.0 38.0 8 37.348321424545034 38.0 38.0 38.0 36.0 38.0 9 37.457986348370085 38.0 38.0 38.0 37.0 38.0 10-11 37.424340546707825 38.0 38.0 38.0 37.0 38.0 12-13 37.54458965338619 38.0 38.0 38.0 37.5 38.0 14-15 37.52190460500594 38.0 38.0 38.0 37.0 38.0 16-17 37.57326036070154 38.0 38.0 38.0 38.0 38.0 18-19 37.561521578553524 38.0 38.0 38.0 38.0 38.0 20-21 37.565472721707245 38.0 38.0 38.0 38.0 38.0 22-23 37.57599325004492 38.0 38.0 38.0 38.0 38.0 24-25 37.58234301558478 38.0 38.0 38.0 38.0 38.0 26-27 37.54265317309496 38.0 38.0 38.0 38.0 38.0 28-29 37.51640204930054 38.0 38.0 38.0 38.0 38.0 30-31 37.52544226616203 38.0 38.0 38.0 38.0 38.0 32-33 37.5153049603462 38.0 38.0 38.0 38.0 38.0 34-35 37.411765456039106 38.0 38.0 38.0 37.0 38.0 36-37 37.45479667021891 38.0 38.0 38.0 37.0 38.0 38-39 37.4708474226355 38.0 38.0 38.0 37.0 38.0 40-41 37.4678533075179 38.0 38.0 38.0 38.0 38.0 42-43 37.4371293629121 38.0 38.0 38.0 37.0 38.0 44-45 37.41159587838686 38.0 38.0 38.0 37.0 38.0 46-47 37.39084266220912 38.0 38.0 38.0 37.0 38.0 48-49 37.34090401374256 38.0 38.0 38.0 37.0 38.0 50-51 37.32094859519833 38.0 38.0 38.0 37.0 38.0 52-53 37.307681255029806 38.0 38.0 38.0 37.0 38.0 54-55 37.28652209925444 38.0 38.0 38.0 37.0 38.0 56-57 37.24645964742397 38.0 38.0 38.0 37.0 38.0 58-59 37.241836258427966 38.0 38.0 38.0 37.0 38.0 60-61 37.24613189242914 38.0 38.0 38.0 37.0 38.0 62-63 37.25432475611395 38.0 38.0 38.0 37.0 38.0 64-65 37.2614828855118 38.0 38.0 38.0 37.0 38.0 66-67 37.2609134009604 38.0 38.0 38.0 37.0 38.0 68-69 37.254097687848216 38.0 38.0 38.0 37.0 38.0 70-71 37.25174032112837 38.0 38.0 38.0 37.0 38.0 72-73 37.24430176600208 38.0 38.0 38.0 37.0 38.0 74-75 37.24319812102001 38.0 38.0 38.0 37.0 38.0 76-77 37.232864955953985 38.0 38.0 38.0 37.0 38.0 78-79 37.22095599963929 38.0 38.0 38.0 36.0 38.0 80-81 37.21335538393277 38.0 38.0 38.0 36.0 38.0 82-83 37.170648831484854 38.0 38.0 38.0 36.0 38.0 84-85 37.161567959164316 38.0 38.0 38.0 36.0 38.0 86-87 37.15325391109962 38.0 38.0 38.0 36.0 38.0 88-89 37.14199871294378 38.0 38.0 38.0 36.0 38.0 90-91 37.134888150611815 38.0 38.0 38.0 36.0 38.0 92-93 37.12152659471488 38.0 38.0 38.0 36.0 38.0 94-95 37.108787462882525 38.0 38.0 38.0 36.0 38.0 96-97 37.09958942783807 38.0 38.0 38.0 36.0 38.0 98-99 37.11166231295965 38.0 38.0 38.0 36.0 38.0 100 35.797984470042145 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 14.0 21 56.0 22 190.0 23 650.0 24 1626.0 25 3535.0 26 6393.0 27 10625.0 28 16860.0 29 24633.0 30 33209.0 31 42899.0 32 55668.0 33 74677.0 34 114746.0 35 224064.0 36 799488.0 37 3974782.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.141101450395134 18.316181347403354 11.425081800755146 23.117635401446364 2 14.588244821901034 20.584062518342623 42.66583030502063 22.16186235473572 3 19.028813964787886 26.507952368994676 30.03607317605909 24.427160490158347 4 12.548552511562244 17.80584715902453 40.11506803620053 29.530532293212687 5 13.432819742654276 38.097133440029836 35.49453494620011 12.975511871115774 6 29.705732729904373 38.33427530112169 19.182191181138457 12.777800787835483 7 26.53314311960787 33.07666491026666 23.690505354729343 16.699686615396132 8 23.963771974579316 37.795895670210854 21.450566007177777 16.789766348032057 9 26.31351573024296 17.251754651039477 21.614826863967902 34.81990275474966 10-11 24.327926258687818 27.06382418367796 29.21137144257027 19.396878115063952 12-13 25.165686345342664 24.786209220115676 29.290140132489643 20.757964302052017 14-15 22.388667486732743 26.003632163405005 26.90713188174333 24.700568468118924 16-17 21.828455128870665 29.03224278661003 27.64145814756323 21.497843936956073 18-19 21.831222526842367 28.302801256807285 29.241144187192 20.62483202915835 20-21 22.684356136190292 27.446181740410296 29.11582957835147 20.753632545047942 22-23 22.457148254145824 27.380057413338797 28.92495747306271 21.237836859452663 24-25 22.151433133101513 27.521954560234068 29.012488027465988 21.314124279198428 26-27 22.07233406685513 27.719711946250175 28.93481563437994 21.27313835251475 28-29 22.08073848582681 27.768838713681582 28.94914204186269 21.20128075862892 30-31 22.346444824811133 27.6662581744172 28.834683019251834 21.15261398151983 32-33 22.103698828634545 27.754980238733946 28.82754169216735 21.313779240464157 34-35 22.237639203417924 27.84289683188196 28.753764620736348 21.165699343963766 36-37 22.245914962545 27.724029943008716 28.795479533858327 21.23457556058796 38-39 22.075300373563074 27.874304839793385 28.911890013201486 21.138504773442055 40-41 22.347236529985018 27.708327607595695 28.73717869134752 21.207257171071774 42-43 22.258074510624525 27.772808326687894 28.582006350071904 21.387110812615678 44-45 22.263139686418402 27.9302570072824 28.47189637999633 21.33470692630287 46-47 22.37560978158455 27.91099167529248 28.243649070008704 21.469749473114266 48-49 22.294125300370986 27.990772400375537 28.22070164946318 21.4944006497903 50-51 22.25493009797292 28.159665979965087 28.11784467439337 21.46755924766862 52-53 22.457314876042876 28.0637465501471 28.00517329447588 21.473765279334145 54-55 22.478384242165877 27.943004147186745 28.011755048196413 21.566856562450962 56-57 22.444057680995087 28.087186861606973 28.01044522715393 21.458310230244006 58-59 22.442008861239096 28.135052764208446 28.018374779625155 21.4045635949273 60-61 22.58395863152861 28.09223473932193 27.989067184495248 21.334739444654208 62-63 22.547969742883787 28.20463365439271 27.95795803844589 21.28943856427761 64-65 22.568184717014102 28.140635296081722 27.90909348898077 21.38208649792341 66-67 22.898447481285626 28.21855187545448 27.640404608690204 21.242596034569686 68-69 22.513194239044232 28.18309792483215 27.85405869587111 21.449649140252507 70-71 22.406360398699615 28.127811370537152 27.963482098754405 21.502346132008828 72-73 22.656325222728167 28.26944350999036 27.72861522694158 21.345616040339888 74-75 22.330883268967234 28.222699352906353 27.901268856837596 21.545148521288812 76-77 22.340732977624782 27.95275577537938 27.96050134434651 21.746009902649327 78-79 22.24931669378217 28.097357942006823 27.923519584845547 21.729805779365467 80-81 22.28878239761185 28.105981611979118 27.93100878331627 21.674227207092763 82-83 22.32361018529041 27.9314912164635 28.087902092439553 21.656996505806536 84-85 22.42762957460889 27.912696199304342 27.974283889221773 21.68539033686499 86-87 22.258066465734345 27.949107217989255 28.025781820599327 21.767044495677073 88-89 22.30071604542491 27.900881789281552 28.01608223076377 21.782319934529767 90-91 22.349640827370507 27.969794160921037 28.017534026098428 21.66303098561003 92-93 22.42458515291724 27.965749810947766 27.92660983167884 21.68305520445616 94-95 22.272486161687603 28.02264349272965 27.968113430323292 21.736756915259456 96-97 22.301176936499882 28.101568011088695 28.03254829647414 21.56470675593728 98-99 23.39340696099921 30.039654846270007 28.2384078640674 18.328530328663383 100 29.61979318008283 40.893541419002624 29.486665400914546 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 572.0 1 600.5 2 905.5 3 1317.0 4 1845.0 5 2796.0 6 3525.5 7 4024.0 8 4698.0 9 5190.5 10 5268.5 11 5284.0 12 5847.0 13 7371.5 14 10119.0 15 13263.5 16 16134.5 17 18661.0 18 19718.5 19 18939.5 20 17797.0 21 17279.0 22 18333.0 23 21829.0 24 27682.5 25 36185.5 26 47027.0 27 59000.5 28 71363.5 29 84575.5 30 97065.0 31 109371.0 32 123255.5 33 137554.0 34 150627.5 35 162234.5 36 174219.5 37 185551.0 38 194505.0 39 200977.0 40 207029.0 41 213126.0 42 216875.5 43 219639.5 44 223401.0 45 226867.0 46 226498.5 47 224671.5 48 223097.5 49 218549.0 50 213240.5 51 206044.5 52 196354.5 53 185140.5 54 172317.0 55 158513.5 56 143439.0 57 128279.5 58 112852.0 59 96118.0 60 79950.5 61 64760.5 62 50304.0 63 38333.0 64 28769.0 65 21435.0 66 15806.5 67 11729.5 68 8831.0 69 6589.0 70 4677.0 71 3210.0 72 2278.0 73 1544.0 74 1001.0 75 658.5 76 426.0 77 245.0 78 155.5 79 112.0 80 75.0 81 51.5 82 32.5 83 17.0 84 9.0 85 9.0 86 8.0 87 4.0 88 2.0 89 2.0 90 1.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008970826982093078 3 0.001170107867229532 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 4.643325720755592E-5 22-23 0.0 24-25 1.2073519187515312E-4 26-27 2.600695202980545E-4 28-29 0.0015144252723573069 30-31 0.002352696334136443 32-33 0.0020403238804537903 34-35 4.762660295036533E-4 36-37 9.371715506581052E-6 38-39 5.653333624794089E-5 40-41 1.2320192710558965E-4 42-43 0.0019066058650056316 44-45 1.7278674103663982E-4 46-47 4.354008779423303E-4 48-49 0.0011215935132492865 50-51 8.452648362161779E-4 52-53 0.0 54-55 0.00290109219641092 56-57 0.05060596014810785 58-59 0.06644351267676549 60-61 0.04296460475068109 62-63 0.0069063165377212694 64-65 0.0 66-67 0.0 68-69 7.412934554165995E-5 70-71 0.001358693617156941 72-73 0.007131720390312573 74-75 0.011649339183599476 76-77 0.01271301600220594 78-79 0.004008153474868655 80-81 0.007272180375289536 82-83 0.044332431546798945 84-85 0.03778052036370048 86-87 0.008716225497818503 88-89 0.0021504873439119293 90-91 0.0025088066843170927 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 25.0 20-21 105.0 22-23 231.0 24-25 400.0 26-27 1182.0 28-29 3086.0 30-31 9626.0 32-33 11734.0 34-35 16459.0 36-37 26828.0 38-39 31002.0 40-41 30670.0 42-43 34162.0 44-45 40481.0 46-47 41327.0 48-49 40240.0 50-51 37088.0 52-53 34873.0 54-55 38637.0 56-57 41890.0 58-59 42171.0 60-61 41303.0 62-63 40282.0 64-65 42175.0 66-67 45008.0 68-69 47431.0 70-71 47446.0 72-73 43494.0 74-75 44487.0 76-77 47276.0 78-79 48959.0 80-81 49325.0 82-83 46180.0 84-85 44805.0 86-87 46668.0 88-89 49343.0 90-91 49798.0 92-93 49156.0 94-95 54807.0 96-97 163332.0 98-99 1219744.0 100-101 2680883.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.101866785263 #Duplication Level Percentage of deduplicated Percentage of total 1 90.79280737075928 79.08223012667919 2 6.597549876678073 11.49317820935084 3 1.5380999806829843 4.019141388595947 4 0.5221538737289358 1.8192230860378724 5 0.24060482223729737 1.0478564587202481 6 0.10446879645912986 0.5459656315439931 7 0.0648059733037746 0.3951304877516281 8 0.03852444026870178 0.26844405314090275 9 0.024830045169812867 0.1946468957987793 >10 0.07451512260599367 0.960009304859561 >50 8.764121111883473E-4 0.04841036799771113 >100 7.632859948520222E-4 0.12576398952335835 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.857314074967511E-5 0.0 1.857314074967511E-5 0.0 3 0.0 1.857314074967511E-5 0.0 1.857314074967511E-5 0.0 4 0.0 5.571942224902533E-5 0.0 1.857314074967511E-5 0.0 5 1.857314074967511E-5 7.429256299870043E-5 0.0 7.429256299870043E-5 0.0 6 5.571942224902533E-5 7.429256299870043E-5 0.0 7.429256299870043E-5 0.0 7 5.571942224902533E-5 7.429256299870043E-5 0.0 7.429256299870043E-5 0.0 8 5.571942224902533E-5 9.286570374837555E-5 0.0 7.429256299870043E-5 0.0 9 5.571942224902533E-5 2.043045482464262E-4 0.0 9.286570374837555E-5 0.0 10-11 5.571942224902533E-5 2.3216425937093888E-4 0.0 1.1143884449805066E-4 0.0 12-13 5.571942224902533E-5 2.4145082974577641E-4 0.0 1.392985556225633E-4 0.0 14-15 5.571942224902533E-5 2.6002397049545154E-4 0.0 1.4858512599740087E-4 0.0 16-17 7.429256299870043E-5 2.9717025199480174E-4 0.0 1.67158266747076E-4 0.0 18-19 7.429256299870043E-5 3.0645682236963927E-4 0.0 1.67158266747076E-4 0.0 20-21 9.286570374837555E-5 3.528896742438271E-4 0.0 2.043045482464262E-4 0.0 22-23 1.0215227412321311E-4 4.0860909649285244E-4 0.0 2.043045482464262E-4 9.286570374837554E-6 24-25 1.392985556225633E-4 5.293345113657406E-4 0.0 2.2287768899610132E-4 1.857314074967511E-5 26-27 1.4858512599740087E-4 6.036270743644411E-4 0.0 2.878836816199642E-4 1.857314074967511E-5 28-29 1.4858512599740087E-4 6.129136447392787E-4 0.0 6.500599262386289E-4 1.857314074967511E-5 30-31 1.4858512599740087E-4 6.964927781128166E-4 0.0 0.0014951378303488462 1.857314074967511E-5 32-33 1.67158266747076E-4 7.429256299870044E-4 0.0 0.003445317609064733 1.857314074967511E-5 34-35 1.857314074967511E-4 8.636510448598926E-4 0.0 0.005878399047272172 3.714628149935022E-5 36-37 2.043045482464262E-4 0.001021522741232131 0.0 0.009370149508211092 3.714628149935022E-5 38-39 2.043045482464262E-4 0.0010586690227314813 0.0 0.014589202058869797 3.714628149935022E-5 40-41 2.043045482464262E-4 0.001170107867229532 0.0 0.020644045943263883 3.714628149935022E-5 42-43 2.043045482464262E-4 0.0012072541487288821 0.0 0.02605811647179418 3.714628149935022E-5 44-45 2.1359111862126375E-4 0.0013279795636017703 0.0 0.032196539489561804 3.714628149935022E-5 46-47 2.2287768899610132E-4 0.0014301318377249834 0.0 0.03873428503344744 3.714628149935022E-5 48-49 2.2287768899610132E-4 0.0014301318377249834 0.0 0.045559914258953046 3.714628149935022E-5 50-51 2.2287768899610132E-4 0.0016994423785952725 0.0 0.05219981207696189 3.714628149935022E-5 52-53 2.2287768899610132E-4 0.0017644483712191354 0.0 0.05879327704309656 4.643285187418777E-5 54-55 2.2287768899610132E-4 0.0017830215119688105 0.0 0.06596250937247115 5.571942224902533E-5 56-57 2.4145082974577641E-4 0.0018201677934681607 0.0 0.07283457144985095 6.500599262386289E-5 58-59 2.6002397049545154E-4 0.0018480275045926736 0.0 0.0799945172088507 7.429256299870043E-5 60-61 2.6002397049545154E-4 0.0018944603564668612 0.0 0.08704302412335241 7.429256299870043E-5 62-63 2.6002397049545154E-4 0.0019130334972165364 0.0 0.09374792793398512 9.286570374837555E-5 64-65 2.6002397049545154E-4 0.002024472341714587 0.0 0.10011851521112367 9.286570374837555E-5 66-67 2.6002397049545154E-4 0.002024472341714587 0.0 0.10636837707338935 9.286570374837555E-5 68-69 2.878836816199642E-4 0.0020801917639636123 0.0 0.11272039120977824 9.286570374837555E-5 70-71 2.9717025199480174E-4 0.0021266246158378 0.0 0.11809731545680918 9.286570374837555E-5 72-73 2.9717025199480174E-4 0.0021359111862126376 0.0 0.12270345436272861 9.286570374837555E-5 74-75 2.9717025199480174E-4 0.002154484326962313 0.0 0.12578659572717468 9.286570374837555E-5 76-77 3.1574339274447686E-4 0.0022009171788365004 0.0 0.12928763275848842 9.286570374837555E-5 78-79 3.1574339274447686E-4 0.0022566366010855258 0.0 0.1314792633669501 9.286570374837555E-5 80-81 3.1574339274447686E-4 0.0022659231714603633 0.0 0.1321014635820642 9.286570374837555E-5 82-83 3.1574339274447686E-4 0.002275209741835201 0.0 0.13263079809342998 9.286570374837555E-5 84-85 3.1574339274447686E-4 0.0022844963122100386 0.0 0.13285367578242607 1.1143884449805066E-4 86-87 3.3431653349415193E-4 0.0022844963122100386 0.0 0.13298368776767377 1.1143884449805066E-4 88 3.5288967424382706E-4 0.0023216425937093886 0.0 0.13300226090842346 1.1143884449805066E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6445 0.0 47.70844 1 GTATCAA 11690 0.0 38.013344 1 TCAACGC 13000 0.0 33.622272 4 ATCAACG 13215 0.0 33.04299 3 TATCAAC 13490 0.0 32.56178 2 CAACGCA 13405 0.0 32.542835 5 AACGCAG 13870 0.0 31.451817 6 ACGCAGA 15955 0.0 27.288239 7 CGCAGAG 16405 0.0 26.539705 8 GTACATG 16535 0.0 22.748209 1 GCAGAGT 19730 0.0 22.21839 9 TACATGG 16610 0.0 22.106318 2 ACATGGG 17105 0.0 20.8914 3 GAGTACT 11220 0.0 20.390291 12-13 CAGAGTA 19165 0.0 19.224342 10-11 CATGGGG 11725 0.0 19.202936 4 AGAGTAC 17720 0.0 18.060658 10-11 GTACTTT 12740 0.0 17.773611 14-15 GATCAAC 2175 0.0 16.470352 1 AGTACTT 12415 0.0 16.109152 12-13 >>END_MODULE