##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138674_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5542783 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.550577210040515 27.0 18.0 33.0 18.0 33.0 2 30.35364599335749 32.0 27.0 33.0 27.0 33.0 3 28.6054180724737 30.0 27.0 31.0 18.0 33.0 4 31.947663294774483 33.0 32.0 33.0 31.0 33.0 5 32.713409310810114 33.0 33.0 33.0 32.0 34.0 6 37.0734196161026 38.0 37.0 38.0 36.0 38.0 7 37.108150003346694 38.0 38.0 38.0 36.0 38.0 8 37.37732453173794 38.0 38.0 38.0 37.0 38.0 9 37.48437743278061 38.0 38.0 38.0 37.0 38.0 10-11 37.44899818376436 38.0 38.0 38.0 37.0 38.0 12-13 37.550492595506626 38.0 38.0 38.0 37.5 38.0 14-15 37.522929095365996 38.0 38.0 38.0 37.0 38.0 16-17 37.561005816031404 38.0 38.0 38.0 38.0 38.0 18-19 37.554108558823245 38.0 38.0 38.0 38.0 38.0 20-21 37.558045093411394 38.0 38.0 38.0 38.0 38.0 22-23 37.563077740036285 38.0 38.0 38.0 38.0 38.0 24-25 37.56817005261238 38.0 38.0 38.0 38.0 38.0 26-27 37.5359471692465 38.0 38.0 38.0 38.0 38.0 28-29 37.511809396684626 38.0 38.0 38.0 38.0 38.0 30-31 37.51475386471357 38.0 38.0 38.0 38.0 38.0 32-33 37.50321567776399 38.0 38.0 38.0 38.0 38.0 34-35 37.402340900229454 38.0 38.0 38.0 37.0 38.0 36-37 37.44378637920529 38.0 38.0 38.0 37.0 38.0 38-39 37.448909171587424 38.0 38.0 38.0 37.0 38.0 40-41 37.44834722334339 38.0 38.0 38.0 37.0 38.0 42-43 37.41665332707294 38.0 38.0 38.0 37.0 38.0 44-45 37.39208660827339 38.0 38.0 38.0 37.0 38.0 46-47 37.37033173762126 38.0 38.0 38.0 37.0 38.0 48-49 37.3197795741996 38.0 38.0 38.0 37.0 38.0 50-51 37.292101259924664 38.0 38.0 38.0 37.0 38.0 52-53 37.271691129251984 38.0 38.0 38.0 37.0 38.0 54-55 37.240844276499985 38.0 38.0 38.0 37.0 38.0 56-57 37.193833957696896 38.0 38.0 38.0 37.0 38.0 58-59 37.183726120491926 38.0 38.0 38.0 37.0 38.0 60-61 37.184965938014415 38.0 38.0 38.0 36.5 38.0 62-63 37.18862047257828 38.0 38.0 38.0 36.0 38.0 64-65 37.19539928606444 38.0 38.0 38.0 36.5 38.0 66-67 37.190001653227384 38.0 38.0 38.0 36.0 38.0 68-69 37.177655916546186 38.0 38.0 38.0 36.0 38.0 70-71 37.17265357389278 38.0 38.0 38.0 36.0 38.0 72-73 37.16207435155211 38.0 38.0 38.0 36.0 38.0 74-75 37.15859417015899 38.0 38.0 38.0 36.0 38.0 76-77 37.145684573941175 38.0 38.0 38.0 36.0 38.0 78-79 37.13181769604999 38.0 38.0 38.0 36.0 38.0 80-81 37.118872641866986 38.0 38.0 38.0 36.0 38.0 82-83 37.07169990078491 38.0 38.0 38.0 36.0 38.0 84-85 37.062404887893685 38.0 38.0 38.0 36.0 38.0 86-87 37.04862221376301 38.0 38.0 38.0 36.0 38.0 88-89 37.03235782166787 38.0 38.0 38.0 36.0 38.0 90-91 37.020235841514705 38.0 38.0 38.0 36.0 38.0 92-93 37.002238853257694 38.0 38.0 38.0 36.0 38.0 94-95 36.986935635175215 38.0 38.0 38.0 36.0 38.0 96-97 36.97624329255255 38.0 38.0 38.0 35.5 38.0 98-99 36.99141925500335 38.0 38.0 38.0 35.0 38.0 100 35.60272685297762 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 6.0 20 11.0 21 54.0 22 266.0 23 775.0 24 1758.0 25 3835.0 26 7076.0 27 11867.0 28 18882.0 29 27364.0 30 36037.0 31 46215.0 32 59952.0 33 82028.0 34 124911.0 35 239475.0 36 866304.0 37 4015965.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.70484429933483 17.519791050813282 11.438459705169768 23.33690494468212 2 14.512765496010546 20.345874195875332 42.75222369091012 22.389136617204 3 19.168377765986563 26.12326807010188 30.00222092603053 24.706133237881023 4 12.511007557034073 17.53357474034253 40.31086910672851 29.644548595894875 5 13.34041040394329 37.89289604157334 35.6871629288031 13.079530625680277 6 29.4858557515241 38.33648187201267 19.320005852655605 12.857656523807625 7 26.12904023123402 32.80079700035163 24.096902224027172 16.973260544387177 8 23.526358509795532 38.02986694590064 21.733703087420164 16.710071456883664 9 25.932352033265598 17.07133402119477 21.829773960120754 35.16653998541888 10-11 24.169861962844298 27.01024918348779 29.400555641453042 19.419333212214877 12-13 24.89749282986543 24.58008007890621 29.55531544352359 20.967111647704773 14-15 22.0690671094286 25.8652377334635 27.041776667064184 25.023918490043716 16-17 21.680291290494324 28.832853460075924 27.80305489137857 21.68380035805118 18-19 21.683809378790404 28.24561235754674 29.31765504801469 20.752923215648167 20-21 22.419223789548717 27.486170414198835 29.14458408766139 20.950021708591056 22-23 22.238282630285287 27.38909996553071 28.937926507801237 21.43469089638276 24-25 21.973740273895686 27.436606264960332 29.10263677124867 21.487016689895317 26-27 21.91965159743155 27.683406217942874 28.971194715136512 21.42574746948906 28-29 21.944835408319705 27.749665279171072 28.98166173865676 21.323837573852465 30-31 22.135165047361667 27.576550072010253 28.931703063773107 21.35658181685497 32-33 21.95165249426105 27.684231546353455 28.9147295028072 21.449386456578296 34-35 22.06951101640949 27.738875990145566 28.828528090452142 21.363084902992803 36-37 22.11262504515867 27.625814107341597 28.836321313164127 21.425239534335606 38-39 21.91381831327911 27.79617179255625 28.93487890625572 21.35513098790892 40-41 22.1788857632418 27.62083300212269 28.808048344977227 21.39223288965828 42-43 22.03609544719034 27.748028048493428 28.661295492195837 21.554581012120398 44-45 22.08251490679695 27.834783144097376 28.564620742377254 21.518081206728418 46-47 22.11919033913681 27.835816923071288 28.35032542634668 21.694667311445222 48-49 22.14374351567427 27.904365272920035 28.29952061524749 21.652370596158203 50-51 22.0557397216446 28.038489420290574 28.265958797726142 21.639812060338684 52-53 22.21354461925841 27.95598224828042 28.175262661761423 21.655210470699746 54-55 22.22192893401015 27.863292240754166 28.140788010635724 21.77399081459995 56-57 22.233126972897548 27.939612467737497 28.177481414690874 21.649779144674085 58-59 22.216821778913893 28.02477731693194 28.18769851996279 21.57070238419138 60-61 22.353541007288673 27.922661665456218 28.198874251796198 21.524923075458915 62-63 22.25590191209461 28.023402798942776 28.161811068864385 21.55888422009823 64-65 22.249770327050854 27.951905643229836 28.189864851863337 21.60845917785597 66-67 22.39399120902709 28.019965883349673 27.980430084446027 21.605612823177207 68-69 22.253755290937704 27.94094259798149 28.143315129655296 21.661986981425517 70-71 22.192891751496777 27.86471628650059 28.25618567538495 21.686206286617683 72-73 22.41185467246854 27.906666249526662 28.132968189342776 21.54851088866202 74-75 22.091120400961618 27.999668801328003 28.178078851264445 21.731131946445934 76-77 22.23659958478878 27.798783372270936 28.103793419836382 21.860823623103897 78-79 22.142892540259158 27.893994630675817 28.109273934645927 21.85383889441909 80-81 22.14776064025175 27.901261887677155 28.14174071956119 21.809236752509907 82-83 22.157729826562072 27.87152850501488 28.174473917138908 21.79626775128414 84-85 22.303303787340038 27.834314621612506 28.107259931434964 21.75512165961249 86-87 22.109772394147694 27.836905130260313 28.17051327770089 21.8828091978911 88-89 22.177061967486434 27.845118762876293 28.1254386741988 21.85238059543847 90-91 22.227324220120945 27.928023765685722 28.042089223335893 21.802562790857436 92-93 22.264892037284092 27.941684594691058 28.010766228518186 21.782657139506664 94-95 22.147659531676993 27.95744528204468 28.039762586496973 21.855132599781356 96-97 22.205760750136253 28.0231876032802 28.147742489020004 21.623309157563543 98-99 23.274955224454892 29.99605797017615 28.35299463209938 18.37599217326958 100 29.57219549333611 40.84761205868389 29.580192447979993 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 504.0 1 540.5 2 888.5 3 1339.5 4 1840.5 5 2824.0 6 3693.5 7 4394.5 8 5159.5 9 5463.5 10 5217.0 11 5041.0 12 5615.5 13 6938.0 14 9330.5 15 12344.5 16 15099.5 17 17311.5 18 18089.0 19 17478.5 20 16641.5 21 16189.5 22 17268.0 23 21016.0 24 27410.0 25 36258.0 26 47714.0 27 60970.5 28 74033.5 29 87827.5 30 101465.0 31 114719.5 32 128583.5 33 142703.0 34 155962.0 35 168285.0 36 181291.5 37 192134.0 38 200538.5 39 206873.0 40 213274.0 41 219068.5 42 222589.5 43 225539.5 44 230284.5 45 234540.5 46 234618.5 47 234459.5 48 233485.5 49 228934.5 50 222801.5 51 214641.0 52 202909.0 53 190038.5 54 175687.5 55 160737.0 56 146167.5 57 130626.5 58 114537.5 59 97027.5 60 79380.0 61 63713.5 62 49937.5 63 37818.0 64 27765.0 65 20330.0 66 14898.0 67 11182.5 68 8261.5 69 5850.5 70 4219.5 71 2945.5 72 2036.0 73 1407.0 74 938.0 75 624.0 76 406.5 77 250.0 78 146.5 79 86.5 80 59.0 81 40.0 82 27.0 83 16.0 84 8.5 85 6.5 86 6.0 87 4.0 88 2.0 89 0.5 90 0.5 91 1.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007595462423840154 3 9.020739220712773E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 8.118726817652133E-5 22-23 9.021011017180334E-6 24-25 1.1727830611153492E-4 26-27 2.435997108200766E-4 28-29 0.002174870999015713 30-31 0.0031068303484581184 32-33 0.0022891030371420995 34-35 3.990221056432789E-4 36-37 0.0 38-39 4.573853602472296E-5 40-41 1.748053105853356E-4 42-43 0.0024519253767152026 44-45 2.5150047980702645E-4 46-47 6.008383760728133E-4 48-49 0.0011732559337655393 50-51 9.438078719868576E-4 52-53 0.0 54-55 0.0032679618495426496 56-57 0.05279720940729724 58-59 0.06875344897250098 60-61 0.04506671121810326 62-63 0.007743708237057391 64-65 0.0 66-67 0.0 68-69 1.744233947327623E-4 70-71 0.001264158969026551 72-73 0.007763223767601304 74-75 0.01289354074791829 76-77 0.013541371448775338 78-79 0.0042013411973822416 80-81 0.0070128388309162095 82-83 0.04507296371741992 84-85 0.037917862348819206 86-87 0.00809995592770166 88-89 0.002339540991143134 90-91 0.002734095747803332 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 22.0 20-21 101.0 22-23 222.0 24-25 397.0 26-27 982.0 28-29 2604.0 30-31 9559.0 32-33 11889.0 34-35 16308.0 36-37 26896.0 38-39 31753.0 40-41 30086.0 42-43 34305.0 44-45 41112.0 46-47 41768.0 48-49 40523.0 50-51 37352.0 52-53 35920.0 54-55 39475.0 56-57 42455.0 58-59 42441.0 60-61 42370.0 62-63 40899.0 64-65 42572.0 66-67 45794.0 68-69 47550.0 70-71 47379.0 72-73 44125.0 74-75 44932.0 76-77 47284.0 78-79 49756.0 80-81 49431.0 82-83 46653.0 84-85 45534.0 86-87 47443.0 88-89 49770.0 90-91 50428.0 92-93 50176.0 94-95 57045.0 96-97 170003.0 98-99 1273917.0 100-101 2763552.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.82227233125587 #Duplication Level Percentage of deduplicated Percentage of total 1 91.14463263338845 80.04528748661713 2 6.539441221169645 11.486171756396022 3 1.3736701144795205 3.619164926613837 4 0.45676335036466986 1.6045598138665154 5 0.19699612896200885 0.8650323842952372 6 0.10295267413203116 0.542492267091257 7 0.05411953946885162 0.3327030653572947 8 0.03744226646920246 0.26306119380461995 9 0.022704030730908355 0.17945276128803325 >10 0.06988044639315429 0.9336164351419984 >50 9.80453400703148E-4 0.056111325107307784 >100 4.1714104090384167E-4 0.07234658442067998 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.8041478441425545E-5 0.0 2 0.0 0.0 0.0 3.608295688285109E-5 0.0 3 0.0 0.0 0.0 3.608295688285109E-5 0.0 4 0.0 3.608295688285109E-5 0.0 3.608295688285109E-5 0.0 5 0.0 3.608295688285109E-5 0.0 3.608295688285109E-5 0.0 6 1.8041478441425545E-5 3.608295688285109E-5 0.0 3.608295688285109E-5 0.0 7 1.8041478441425545E-5 3.608295688285109E-5 0.0 3.608295688285109E-5 0.0 8 1.8041478441425545E-5 3.608295688285109E-5 0.0 3.608295688285109E-5 0.0 9 1.8041478441425545E-5 3.608295688285109E-5 0.0 9.020739220712772E-5 0.0 10-11 1.8041478441425545E-5 3.608295688285109E-5 0.0 9.922813142784049E-5 0.0 12-13 1.8041478441425545E-5 3.608295688285109E-5 0.0 1.1726960986926604E-4 0.0 14-15 1.8041478441425545E-5 5.412443532427663E-5 0.0 1.262903490899788E-4 0.0 16-17 1.8041478441425545E-5 5.412443532427663E-5 0.0 1.262903490899788E-4 0.0 18-19 1.8041478441425545E-5 6.31451745449894E-5 0.0 1.4433182753140436E-4 9.020739220712773E-6 20-21 1.8041478441425545E-5 7.216591376570218E-5 0.0 1.4433182753140436E-4 1.8041478441425545E-5 22-23 1.8041478441425545E-5 9.020739220712772E-5 0.0 1.8041478441425544E-4 3.608295688285109E-5 24-25 1.8041478441425545E-5 1.1726960986926604E-4 0.0 1.9845626285568097E-4 6.31451745449894E-5 26-27 1.8041478441425545E-5 1.4433182753140436E-4 0.0 2.7062217662138314E-4 7.216591376570218E-5 28-29 1.8041478441425545E-5 1.4433182753140436E-4 0.0 5.051613963599152E-4 7.216591376570218E-5 30-31 1.8041478441425545E-5 2.525806981799576E-4 0.0 0.0010734679672648197 7.216591376570218E-5 32-33 1.8041478441425545E-5 2.7062217662138314E-4 0.0 0.002616014374006704 8.118665298641496E-5 34-35 1.8041478441425545E-5 3.15725872724947E-4 0.0 0.005015531006716301 1.0824887064855326E-4 36-37 1.8041478441425545E-5 3.698503080492236E-4 0.0 0.00819985195162791 1.262903490899788E-4 38-39 1.8041478441425545E-5 3.9691252571136195E-4 0.0 0.014171581315739763 1.4433182753140433E-4 40-41 1.8041478441425545E-5 4.3299548259421306E-4 0.0 0.0206935757723151 1.623733059728299E-4 42-43 1.8041478441425545E-5 4.510369610356386E-4 0.0 0.02639468295980557 1.7139404519354265E-4 44-45 2.706221766213832E-5 4.780991786977769E-4 0.0 0.032393474541579564 1.894355236349682E-4 46-47 3.608295688285109E-5 4.871199179184897E-4 0.0 0.039276298566983406 1.9845626285568097E-4 48-49 3.608295688285109E-5 4.961406571392025E-4 0.0 0.04672742916329216 2.4355995895924482E-4 50-51 3.608295688285109E-5 5.592858316841919E-4 0.0 0.05410639384583521 2.525806981799576E-4 52-53 3.608295688285109E-5 5.592858316841919E-4 0.0 0.061656752573571796 2.525806981799576E-4 54-55 3.608295688285109E-5 5.592858316841919E-4 0.0 0.06901767577767343 2.525806981799576E-4 56-57 3.608295688285109E-5 6.134102670084685E-4 0.0 0.07470976222594318 2.525806981799576E-4 58-59 3.608295688285109E-5 6.134102670084685E-4 0.0 0.08022143388979869 2.525806981799576E-4 60-61 3.608295688285109E-5 6.134102670084685E-4 0.0 0.08618414251468982 2.886636550628087E-4 62-63 3.608295688285109E-5 6.314517454498941E-4 0.0 0.09169581417854533 2.886636550628087E-4 64-65 3.608295688285109E-5 7.216591376570218E-4 0.0 0.09712629918941441 2.886636550628087E-4 66-67 3.608295688285109E-5 7.397006160984473E-4 0.0 0.10266503307093205 2.886636550628087E-4 68-69 3.608295688285109E-5 7.397006160984473E-4 0.0 0.10825789138777397 2.886636550628087E-4 70-71 3.608295688285109E-5 7.397006160984473E-4 0.0 0.11304790391397246 2.886636550628087E-4 72-73 3.608295688285109E-5 7.487213553191601E-4 0.0 0.1170260499103068 3.0670513350423425E-4 74-75 3.608295688285109E-5 7.667628337605856E-4 0.0 0.12060728338092977 3.0670513350423425E-4 76-77 3.608295688285109E-5 8.028457906434367E-4 0.0 0.12381866654350351 3.0670513350423425E-4 78-79 3.608295688285109E-5 8.208872690848622E-4 0.0 0.1262001416977717 3.0670513350423425E-4 80-81 3.608295688285109E-5 8.389287475262878E-4 0.0 0.12693984231387012 3.0670513350423425E-4 82-83 3.608295688285109E-5 8.479494867470005E-4 0.0 0.12766150145152716 3.247466119456598E-4 84-85 3.608295688285109E-5 8.659909651884261E-4 0.0 0.12791408214970712 3.247466119456598E-4 86-87 3.608295688285109E-5 8.659909651884261E-4 0.0 0.12801331028113494 3.247466119456598E-4 88 3.608295688285109E-5 9.201154005127028E-4 0.0 0.12802233102035565 3.247466119456598E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5915 0.0 47.05682 1 GTATCAA 10450 0.0 35.14578 1 TCAACGC 11075 0.0 32.11742 4 ATCAACG 11275 0.0 31.472443 3 CAACGCA 11360 0.0 31.274023 5 AACGCAG 11830 0.0 30.176079 6 TATCAAC 11905 0.0 30.096151 2 ACGCAGA 13890 0.0 25.700722 7 CGCAGAG 14020 0.0 25.462412 8 GTACATG 14270 0.0 22.651352 1 ACATGGG 13610 0.0 22.051996 3 TACATGG 14120 0.0 21.86245 2 GCAGAGT 17350 0.0 20.723238 9 GAGTACT 10615 0.0 19.130867 12-13 CAGAGTA 16740 0.0 18.784008 10-11 CATGGGG 10310 0.0 17.664932 4 AGAGTAC 15480 0.0 16.860706 10-11 GTACTTT 12545 0.0 16.068523 14-15 GTACTAG 1410 0.0 15.161676 1 ATGGGGG 6705 0.0 15.047844 5 >>END_MODULE