##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138673_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9135054 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.64439673810357 33.0 33.0 33.0 33.0 33.0 2 32.64716563251843 33.0 33.0 33.0 33.0 33.0 3 32.647317793633185 33.0 33.0 33.0 33.0 33.0 4 36.56161780762325 37.0 37.0 37.0 37.0 37.0 5 36.58356064452383 37.0 37.0 37.0 37.0 37.0 6 36.56968661597403 37.0 37.0 37.0 37.0 37.0 7 36.53699332264484 37.0 37.0 37.0 37.0 37.0 8 36.53679190073753 37.0 37.0 37.0 37.0 37.0 9 36.57245222633605 37.0 37.0 37.0 37.0 37.0 10-11 36.500046086208144 37.0 37.0 37.0 37.0 37.0 12-13 36.49759032623124 37.0 37.0 37.0 37.0 37.0 14-15 38.60604102613953 40.0 37.0 40.0 37.0 40.0 16-17 38.55157594032832 40.0 37.0 40.0 37.0 40.0 18-19 38.57020002290079 40.0 37.0 40.0 37.0 40.0 20-21 38.556300187649576 40.0 37.0 40.0 37.0 40.0 22-23 38.56299493559493 40.0 37.0 40.0 37.0 40.0 24-25 38.550949352795335 40.0 37.0 40.0 37.0 40.0 26-27 38.455064132903956 40.0 37.0 40.0 37.0 40.0 28-29 38.39638913615881 40.0 37.0 40.0 37.0 40.0 30-31 38.34411979775351 40.0 37.0 40.0 37.0 40.0 32-33 38.28322511707266 40.0 37.0 40.0 37.0 40.0 34-35 38.24868529965918 40.0 37.0 40.0 37.0 40.0 36-37 38.19425438106599 40.0 37.0 40.0 37.0 40.0 38-39 38.148461905953006 40.0 37.0 40.0 37.0 40.0 40-41 38.11801287160638 40.0 37.0 40.0 35.0 40.0 42-43 38.06432809235595 40.0 37.0 40.0 33.0 40.0 44-45 38.0032677262971 40.0 37.0 40.0 33.0 40.0 46-47 37.96809758155171 40.0 37.0 40.0 33.0 40.0 48-49 37.94940470425762 40.0 37.0 40.0 33.0 40.0 50-51 37.87933679250986 40.0 37.0 40.0 33.0 40.0 52-53 37.77285891270628 40.0 37.0 40.0 33.0 40.0 54-55 37.58417810699121 40.0 37.0 40.0 33.0 40.0 56-57 37.509646971848056 40.0 37.0 40.0 33.0 40.0 58-59 37.395963186751146 40.0 37.0 40.0 33.0 40.0 60-61 37.26419561642089 37.0 37.0 40.0 33.0 40.0 62-63 37.10610551884758 37.0 37.0 40.0 33.0 40.0 64-65 36.92346157647558 37.0 37.0 40.0 33.0 40.0 66-67 36.72029721089328 37.0 37.0 40.0 33.0 40.0 68-69 36.51857517668418 37.0 37.0 40.0 33.0 40.0 70-71 36.25516126225314 37.0 37.0 40.0 33.0 40.0 72-73 36.03415186406406 37.0 37.0 37.0 33.0 40.0 74-75 35.839095971304104 37.0 37.0 37.0 33.0 40.0 76-77 34.200758616586675 35.0 33.0 37.0 30.0 37.0 78-79 35.27828999651738 37.0 33.0 37.0 33.0 37.0 80-81 35.325256835848144 37.0 33.0 37.0 33.0 37.0 82-83 35.19595587076695 37.0 33.0 37.0 33.0 37.0 84-85 35.03167307743297 37.0 33.0 37.0 33.0 37.0 86-87 34.94863756620941 37.0 33.0 37.0 33.0 37.0 88-89 34.84893976804531 37.0 33.0 37.0 33.0 37.0 90-91 34.74186063597726 37.0 33.0 37.0 33.0 37.0 92-93 34.71490741902208 37.0 33.0 37.0 33.0 37.0 94-95 34.744944002183686 37.0 33.0 37.0 33.0 37.0 96-97 34.73535575429304 37.0 33.0 37.0 33.0 37.0 98-99 34.71136772100401 37.0 33.0 37.0 33.0 37.0 100 34.694285188810404 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 5.0 20 65.0 21 343.0 22 1209.0 23 3581.0 24 8146.0 25 16173.0 26 28062.0 27 44369.0 28 64978.0 29 91268.0 30 123264.0 31 163093.0 32 214881.0 33 288685.0 34 397534.0 35 580747.0 36 1026561.0 37 2586414.0 38 3413252.0 39 82421.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.25886940569809 20.483863587451154 14.51840350369029 23.738863503160463 2 14.267731750682591 21.45079821093559 41.855231507115334 22.42623853126648 3 17.481921836477376 26.997519664361043 30.970895191205216 24.54966330795636 4 12.119249650850449 18.713135138555284 39.73680943757968 29.43080577301459 5 12.99730685773724 38.14603613727954 35.9112381820622 12.945418822921026 6 28.898689486334167 38.615676071182584 19.457881100517962 13.027753341965292 7 25.712393161551102 33.18270477656727 23.849141997409102 17.255760064472526 8 24.090103900863642 36.60592482540333 21.71092803611232 17.59304323762071 9 25.642169165064598 16.814678928006337 21.469998973186147 36.07315293374292 10-11 23.80971304349492 26.880015457756777 29.500548602575545 19.809722896172755 12-13 24.815401991395234 24.614237301865536 29.360044728806976 21.210315977932257 14-15 21.97397027358893 25.901385725803056 27.083825619782825 25.040818380825193 16-17 21.378510734583507 28.95683484739116 27.759715487177196 21.904938930848136 18-19 21.359397547075258 28.14117464439729 29.510526155619882 20.98890165290758 20-21 22.311554367282213 27.28594741244576 29.338751281770868 21.06374693850116 22-23 21.986896223966273 27.303542164408967 29.0874224791965 21.622139132428256 24-25 21.747586656738257 27.42928731649281 29.24677542476555 21.57635060200338 26-27 21.686168079908057 27.623304348549915 29.102999246565766 21.58752832497626 28-29 21.607467878128002 27.67330821739532 29.107345844844772 21.611878059631902 30-31 21.871277124735546 27.50159948290239 29.053232216409075 21.57389117595299 32-33 21.7285670129797 27.614543731166542 28.977839446026493 21.679049809827262 34-35 21.851270803100498 27.699953185206528 28.940558957088452 21.508217054604522 36-37 21.855466009968826 27.650313469553467 28.79910673106837 21.695113789409337 38-39 21.727362574593773 27.770044051110602 28.886850672747645 21.615742701547976 40-41 21.981146473135173 27.653275715167624 28.701706872720894 21.663870938976313 42-43 21.882428450765964 27.736710312248857 28.534600543134463 21.846260693850713 44-45 21.990471838695075 27.8635736774271 28.331696190291815 21.814258293586008 46-47 22.03996244546557 27.843069724363307 28.026448603863933 22.090519226307194 48-49 22.021099765473807 27.949138285922526 28.009868978304542 22.019892970299125 50-51 22.040217845715283 28.057543510892796 27.867931234403255 22.03430740898867 52-53 22.09508716123907 28.013625268292575 27.790899037695265 22.100388532773085 54-55 22.19899257297148 27.895152130810185 27.792373618389565 22.11348167782877 56-57 22.154324757169963 27.98214753116204 27.77421779845722 22.089309913210784 58-59 22.056004206147662 28.07656952910645 27.85000742807534 22.01741883667055 60-61 22.16896158744743 28.066360583854365 27.758235196348668 22.006442632349536 62-63 22.101570009198618 28.13283802980812 27.69820132236135 22.067390638631913 64-65 22.0864849259337 28.049261226252543 27.698963240054162 22.165290607759598 66-67 22.15308416810407 28.08115640977989 27.617108848366733 22.148650573749308 68-69 22.099798805135798 28.06021087127365 27.654272088687808 22.18571823490274 70-71 22.10616134885375 27.86448167147912 27.677911133348204 22.351445846318924 72-73 22.169813984216045 27.897328210000698 27.656099605902007 22.276758199881254 74-75 22.118554631295446 27.970035501496483 27.58818875701337 22.323221110194698 76-77 22.147884344281426 27.97156391269112 27.546424142421543 22.334127600605903 78-79 22.196004740765627 27.95032086146853 27.453705906785736 22.399968490980108 80-81 22.11347052622747 27.994164077180606 27.54787288270313 22.344492513888795 82-83 22.192327673143694 27.936156859303797 27.609996763624938 22.26151870392757 84-85 22.294141769753786 27.915845389226813 27.514761303006207 22.275251538013194 86-87 22.127202851551424 27.92970143667228 27.600634164675185 22.342461547101113 88-89 22.2142626043686 27.86178170945744 27.577245792514994 22.34670989365897 90-91 22.2329784798836 27.92243654341517 27.582052186084937 22.262532790616294 92-93 22.220608035623492 27.895999384553466 27.62093843884213 22.262454140980914 94-95 22.093136522957522 27.95379205345469 27.671398173617867 22.28167324996992 96-97 22.110180365466768 28.057428019594923 27.756019988292273 22.076371626646036 98-99 23.271375995764185 29.907189740706585 27.946301987294635 18.875132276234595 100 22.180624567484834 31.023759499747506 21.71062475451842 25.08499117824924 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1844.0 1 1637.5 2 2271.0 3 3293.5 4 4468.0 5 7452.0 6 10004.5 7 11318.0 8 11753.5 9 11115.0 10 10040.5 11 9183.5 12 10389.5 13 14307.0 14 22888.0 15 34775.0 16 44955.0 17 51616.0 18 53356.5 19 50220.0 20 44887.5 21 39632.0 22 36226.5 23 36891.5 24 41899.5 25 51598.5 26 65620.0 27 82652.5 28 102090.5 29 125008.5 30 148509.5 31 171659.5 32 197260.0 33 221211.5 34 243478.0 35 265031.0 36 287379.5 37 307572.5 38 319537.5 39 329225.0 40 340952.0 41 349466.5 42 354211.0 43 359525.5 44 363928.5 45 368277.5 46 370769.0 47 370008.5 48 365365.0 49 355361.5 50 343864.0 51 329195.5 52 311884.5 53 292220.5 54 270975.0 55 247915.0 56 224450.5 57 201323.0 58 177585.5 59 153273.0 60 127204.0 61 102970.0 62 81599.5 63 62785.5 64 46890.5 65 35109.5 66 26512.5 67 20277.0 68 15635.0 69 11450.0 70 8320.5 71 5922.5 72 4158.0 73 2976.5 74 2032.0 75 1405.0 76 918.5 77 526.5 78 331.5 79 225.5 80 152.5 81 103.0 82 77.0 83 64.0 84 49.0 85 32.5 86 20.0 87 13.5 88 7.5 89 5.5 90 5.0 91 3.0 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.0946842788230918E-4 7 0.0 8 0.0 9 0.0 10-11 0.005270904802533187 12-13 1.6420264182346377E-5 14-15 0.004187167366498326 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 138.0 20-21 514.0 22-23 1115.0 24-25 2359.0 26-27 3211.0 28-29 5181.0 30-31 10426.0 32-33 13568.0 34-35 18767.0 36-37 24910.0 38-39 30184.0 40-41 35259.0 42-43 44871.0 44-45 54902.0 46-47 52831.0 48-49 45626.0 50-51 38861.0 52-53 37996.0 54-55 41951.0 56-57 44930.0 58-59 47522.0 60-61 47928.0 62-63 49957.0 64-65 54204.0 66-67 58913.0 68-69 59245.0 70-71 59875.0 72-73 59490.0 74-75 62681.0 76-77 62245.0 78-79 68216.0 80-81 70929.0 82-83 71061.0 84-85 72342.0 86-87 77088.0 88-89 82913.0 90-91 87201.0 92-93 92417.0 94-95 113996.0 96-97 319036.0 98-99 594235.0 100-101 6415960.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.6956977135289 #Duplication Level Percentage of deduplicated Percentage of total 1 86.96025554116363 71.04278749782131 2 8.793343537406857 14.36756671046407 3 2.3899314941707877 5.857413627114573 4 0.8804430202686649 2.8771362735142096 5 0.40207297831741484 1.6423816247698892 6 0.20172169122924705 0.9887876585355827 7 0.12703229055688134 0.7264594126434506 8 0.07478768519732419 0.4887865698060126 9 0.04530816729888059 0.333133410564301 >10 0.12274801899579386 1.443619419048337 >50 0.0018533695749115022 0.09778596980464416 >100 3.8884175682991846E-4 0.05690239297909891 >500 9.06915066617732E-5 0.050863388880008374 >1k 2.2672556041053712E-5 0.02637604405445506 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0946842788230919E-5 2 0.0 2.1893685576461837E-5 0.0 0.0 1.0946842788230919E-5 3 0.0 2.1893685576461837E-5 0.0 0.0 1.0946842788230919E-5 4 0.0 6.568105672938551E-5 0.0 1.0946842788230919E-5 1.0946842788230919E-5 5 0.0 6.568105672938551E-5 0.0 2.1893685576461837E-5 2.1893685576461837E-5 6 0.0 6.568105672938551E-5 0.0 2.1893685576461837E-5 3.2840528364692754E-5 7 1.0946842788230919E-5 6.568105672938551E-5 0.0 3.2840528364692754E-5 4.3787371152923675E-5 8 2.1893685576461837E-5 6.568105672938551E-5 0.0 4.3787371152923675E-5 4.3787371152923675E-5 9 3.2840528364692754E-5 1.9704317018815653E-4 0.0 6.568105672938551E-5 6.568105672938551E-5 10-11 3.2840528364692754E-5 1.9704317018815653E-4 0.0 9.30481636999628E-5 6.568105672938551E-5 12-13 3.2840528364692754E-5 1.9704317018815653E-4 0.0 1.2588869206465555E-4 6.568105672938551E-5 14-15 3.831394975880822E-5 2.4083054134108018E-4 0.0 1.5325579903523287E-4 6.568105672938551E-5 16-17 4.3787371152923675E-5 2.517773841293111E-4 0.0 1.9156974879404106E-4 6.568105672938551E-5 18-19 4.3787371152923675E-5 2.6819764831165747E-4 0.0 2.0799001297638745E-4 9.30481636999628E-5 20-21 4.3787371152923675E-5 2.846179124940039E-4 0.0 2.1893685576461835E-4 1.3136211345877102E-4 22-23 4.3787371152923675E-5 3.2840528364692754E-4 0.0 2.3535711994696474E-4 1.5325579903523287E-4 24-25 4.3787371152923675E-5 3.995597617704285E-4 0.0 2.6819764831165747E-4 1.6420264182346377E-4 26-27 5.473421394115459E-5 4.269268687410058E-4 0.0 3.174584408586966E-4 1.6420264182346377E-4 28-29 5.473421394115459E-5 4.378737115292367E-4 0.0 4.2145344734689034E-4 1.6967606321757924E-4 30-31 5.473421394115459E-5 4.5976739710569856E-4 0.0 8.155397877232034E-4 1.8062290600581016E-4 32-33 5.473421394115459E-5 4.5976739710569856E-4 0.0 0.0018281227456345634 1.860963273999256E-4 34-35 5.473421394115459E-5 5.035547682586222E-4 0.0 0.0031636375657987355 1.860963273999256E-4 36-37 6.568105672938551E-5 5.582889821997768E-4 0.0 0.0052927984881096495 1.860963273999256E-4 38-39 6.568105672938551E-5 5.692358249880078E-4 0.0 0.01233161840094213 1.9704317018815653E-4 40-41 6.568105672938551E-5 6.513371458997397E-4 0.0 0.020054615988039044 1.9704317018815653E-4 42-43 6.568105672938551E-5 7.060713598408942E-4 0.0 0.024624922852125447 1.9704317018815653E-4 44-45 6.568105672938551E-5 8.429068946937807E-4 0.0 0.030558111643346604 1.9704317018815653E-4 46-47 8.210132091173189E-5 9.30481636999628E-4 0.0 0.03698938178143227 2.134634343705029E-4 48-49 8.757474230584735E-5 9.359550583937434E-4 0.0 0.04409935617238825 2.2988369855284928E-4 50-51 8.757474230584735E-5 0.0011275248071877845 0.0 0.05065651500253857 2.408305413410802E-4 52-53 8.757474230584735E-5 0.0011384716499760156 0.0 0.06928256800671348 2.572508055234266E-4 54-55 8.757474230584735E-5 0.0011494184927642464 0.0 0.09326162713433331 2.7367106970577296E-4 56-57 9.852158509407826E-5 0.0011603653355524773 0.0 0.12024559460732252 2.7914449109988845E-4 58-59 1.0946842788230918E-4 0.0011603653355524773 0.0 0.14676432126181194 2.846179124940039E-4 60-61 1.0946842788230918E-4 0.0011767855997348235 0.0 0.15753601456543115 2.846179124940039E-4 62-63 1.0946842788230918E-4 0.001182259021128939 0.0 0.17117030725817273 3.065115980704657E-4 64-65 1.0946842788230918E-4 0.0013026742917994793 0.0 0.17655068048858824 3.065115980704657E-4 66-67 1.0946842788230918E-4 0.0013026742917994793 0.0 0.18065574653417485 3.119850194645812E-4 68-69 1.0946842788230918E-4 0.001335514820164172 0.0 0.18462945046630266 3.448255478292739E-4 70-71 1.0946842788230918E-4 0.001335514820164172 0.0 0.1885374733417011 3.6124581201162027E-4 72-73 1.0946842788230918E-4 0.0013409882415582875 0.0 0.19157522221543516 3.831394975880821E-4 74-75 1.204152706705401E-4 0.001395722455499442 0.0 0.1942298315915812 3.831394975880821E-4 76-77 1.204152706705401E-4 0.001466876933622943 0.0 0.19697201571003303 3.831394975880821E-4 78-79 1.204152706705401E-4 0.001477823776411174 0.0 0.1987016168705735 3.831394975880821E-4 80-81 1.2588869206465555E-4 0.001477823776411174 0.0 0.19915043742489097 3.995597617704285E-4 82-83 1.3136211345877102E-4 0.001477823776411174 0.0 0.1995499971866614 4.159800259527749E-4 84-85 1.3136211345877102E-4 0.001477823776411174 0.0 0.19974704035684956 4.2145344734689034E-4 86-87 1.3136211345877102E-4 0.0015106643047758668 0.0 0.19985103536333776 4.269268687410058E-4 88 1.3136211345877102E-4 0.0015653985187170213 0.0 0.19985650878473188 4.269268687410058E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11925 0.0 49.5386 1 GTATCAA 21905 0.0 38.020363 1 TCAACGC 26050 0.0 31.129238 4 ATCAACG 26190 0.0 31.079714 3 CAACGCA 26595 0.0 30.47783 5 TATCAAC 27480 0.0 29.892042 2 AACGCAG 27395 0.0 29.795944 6 ACGCAGA 31315 0.0 25.996067 7 CGCAGAG 31495 0.0 25.83385 8 GCAGAGT 37120 0.0 21.778383 9 GTACATG 27800 0.0 20.85553 1 GAGTACT 21460 0.0 20.36612 12-13 TACATGG 27625 0.0 20.352617 2 ACATGGG 28090 0.0 19.359962 3 AGAGTAC 33635 0.0 19.066097 10-11 GTGGTAT 5725 0.0 18.844913 1 CAGAGTA 37015 0.0 18.776749 10-11 CATGGGG 20135 0.0 18.340017 4 GTACTTT 24685 0.0 17.705654 14-15 AGTACTT 24110 0.0 16.799656 12-13 >>END_MODULE