##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138672_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8171254 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.65329776800476 33.0 33.0 33.0 33.0 33.0 2 32.65847310584153 33.0 33.0 33.0 33.0 33.0 3 32.65825588092109 33.0 33.0 33.0 33.0 33.0 4 36.57476820571237 37.0 37.0 37.0 37.0 37.0 5 36.59732814571668 37.0 37.0 37.0 37.0 37.0 6 36.57937092642084 37.0 37.0 37.0 37.0 37.0 7 36.5474837766639 37.0 37.0 37.0 37.0 37.0 8 36.54606771494314 37.0 37.0 37.0 37.0 37.0 9 36.58241856145948 37.0 37.0 37.0 37.0 37.0 10-11 36.507877615846965 37.0 37.0 37.0 37.0 37.0 12-13 36.508258157193495 37.0 37.0 37.0 37.0 37.0 14-15 38.63163120372956 40.0 37.0 40.0 37.0 40.0 16-17 38.57900592736439 40.0 37.0 40.0 37.0 40.0 18-19 38.59663553476614 40.0 37.0 40.0 37.0 40.0 20-21 38.58155369978172 40.0 37.0 40.0 37.0 40.0 22-23 38.58790099628997 40.0 37.0 40.0 37.0 40.0 24-25 38.57618572767299 40.0 37.0 40.0 37.0 40.0 26-27 38.481814098536255 40.0 37.0 40.0 37.0 40.0 28-29 38.422268667175274 40.0 37.0 40.0 37.0 40.0 30-31 38.367703579795986 40.0 37.0 40.0 37.0 40.0 32-33 38.305685351486076 40.0 37.0 40.0 37.0 40.0 34-35 38.27256598565634 40.0 37.0 40.0 37.0 40.0 36-37 38.21942379874241 40.0 37.0 40.0 37.0 40.0 38-39 38.17104289825445 40.0 37.0 40.0 37.0 40.0 40-41 38.140376110230136 40.0 37.0 40.0 37.0 40.0 42-43 38.08519932373767 40.0 37.0 40.0 35.0 40.0 44-45 38.02184359496127 40.0 37.0 40.0 33.0 40.0 46-47 37.98189292695551 40.0 37.0 40.0 33.0 40.0 48-49 37.96108074484049 40.0 37.0 40.0 33.0 40.0 50-51 37.88792854557093 40.0 37.0 40.0 33.0 40.0 52-53 37.785366305126814 40.0 37.0 40.0 33.0 40.0 54-55 37.59806855699974 40.0 37.0 40.0 33.0 40.0 56-57 37.519420015777555 40.0 37.0 40.0 33.0 40.0 58-59 37.4045451512105 40.0 37.0 40.0 33.0 40.0 60-61 37.2687274898959 37.0 37.0 40.0 33.0 40.0 62-63 37.10948290685886 37.0 37.0 40.0 33.0 40.0 64-65 36.9260451974256 37.0 37.0 40.0 33.0 40.0 66-67 36.72199555107352 37.0 37.0 40.0 33.0 40.0 68-69 36.52115101750641 37.0 37.0 40.0 33.0 40.0 70-71 36.255080329663684 37.0 37.0 40.0 33.0 40.0 72-73 36.03112656141451 37.0 37.0 37.0 33.0 40.0 74-75 35.83736692013465 37.0 37.0 37.0 33.0 40.0 76-77 34.20649550147894 35.0 33.0 37.0 30.0 37.0 78-79 35.28337311550864 37.0 33.0 37.0 33.0 37.0 80-81 35.325028697030305 37.0 33.0 37.0 33.0 37.0 82-83 35.19312063231203 37.0 33.0 37.0 33.0 37.0 84-85 35.026365109403216 37.0 33.0 37.0 33.0 37.0 86-87 34.94073884475691 37.0 33.0 37.0 33.0 37.0 88-89 34.83637955207431 37.0 33.0 37.0 33.0 37.0 90-91 34.72271085776431 37.0 33.0 37.0 33.0 37.0 92-93 34.691489251553975 37.0 33.0 37.0 33.0 37.0 94-95 34.716648551737705 37.0 33.0 37.0 33.0 37.0 96-97 34.70769512980536 37.0 33.0 37.0 33.0 37.0 98-99 34.69931482793092 37.0 33.0 37.0 33.0 37.0 100 34.708641362127544 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 2.0 17 0.0 18 1.0 19 11.0 20 57.0 21 254.0 22 1033.0 23 3192.0 24 7198.0 25 14164.0 26 25220.0 27 39751.0 28 58785.0 29 82129.0 30 110996.0 31 147801.0 32 194159.0 33 260686.0 34 358913.0 35 524019.0 36 926352.0 37 2343366.0 38 3020638.0 39 52527.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.357776909150054 20.535330317721122 14.549957693152116 23.55693507997671 2 14.37705889450995 21.340641228384285 41.92870519017033 22.353594686935445 3 17.503494567663665 26.946622880649652 31.01175168462515 24.53813086706153 4 11.987658197872689 18.67463672038588 39.786683904330964 29.55102117741047 5 12.906880633009326 38.272571137795985 36.0167729457437 12.803775283450985 6 29.06529130642457 38.700535206341364 19.336891422000647 12.897282065233421 7 25.824285966389006 33.15057884628235 23.808646751159614 17.21648843616904 8 24.225412647801672 36.72307824478348 21.563556829832972 17.487952277581876 9 25.70933420990218 16.68165008700011 21.326689881381732 36.282325821715986 10-11 23.80450070323488 26.926638380616268 29.503995441334354 19.764865474814496 12-13 24.879230585613332 24.56884980988535 29.383931119013745 21.16798848548757 14-15 21.959995743433822 25.916711434246793 27.07683989246969 25.046452929849693 16-17 21.396611829714267 29.00426911218278 27.71780194325131 21.88131711485165 18-19 21.38711512333358 28.1445112341386 29.44867458532069 21.01969905720713 20-21 22.33323585526177 27.323635825596128 29.30880459513955 21.03432372400256 22-23 21.978231455705615 27.299224466541546 29.176097438285638 21.546446639467206 24-25 21.760559906293842 27.424799253112266 29.267047251029364 21.547593589564528 26-27 21.738788942282262 27.626038999582736 29.136947148395485 21.498224909739513 28-29 21.646212282428806 27.65916742322525 29.198039735018227 21.496580559327715 30-31 21.91137474998427 27.52786025257969 29.093170277601637 21.467594719834405 32-33 21.779794279459587 27.548912182560592 29.047301692570677 21.62399184540915 34-35 21.843179124557086 27.675040353297735 29.05877671408572 21.42300380805946 36-37 21.899954036266458 27.594088205351742 28.89541411823368 21.610543640148123 38-39 21.720317636616358 27.718536008339246 28.982042725063057 21.579103629981343 40-41 21.983655739792034 27.586710239664875 28.87790098943602 21.55173303110707 42-43 21.875054601312215 27.67089792500763 28.675704575332833 21.77834289834732 44-45 21.990196737139673 27.85970596432553 28.418071398709987 21.732025899824812 46-47 22.077457897480272 27.799273823225647 28.10904315549293 22.014225123801157 48-49 22.010854859757075 27.948608293523687 28.079817848492265 21.960718998226973 50-51 21.99040372470854 28.063668404979904 27.970643930206567 21.97528394010499 52-53 22.116852406189036 28.019315857231998 27.883074930298314 21.980756806280656 54-55 22.158879962946997 27.926083871967876 27.87802473724018 22.03701142784494 56-57 22.154418110095513 28.068314137430832 27.811737068600944 21.965530683872707 58-59 22.086521332028042 28.12816059503735 27.915096560755643 21.870221512178965 60-61 22.166446778599784 28.121278278358115 27.807438910995142 21.904836032046965 62-63 22.08368509946943 28.194004361642854 27.76467604332421 21.957634495563504 64-65 22.1074566527769 28.079925097661718 27.774467308384782 22.0381509411766 66-67 22.169269807297873 28.11280330114875 27.653119958492432 22.06480693306094 68-69 22.11553836416173 28.076678933388173 27.75390373783802 22.05387896461208 70-71 22.10740371193849 27.90311091557134 27.81580546236863 22.173679910121542 72-73 22.13341587521089 27.93554628457935 27.77033972539475 22.160698114815006 74-75 22.07242056815115 28.069551767011458 27.69085309149156 22.167174573345825 76-77 22.150604309369978 28.041111180894713 27.61542456841335 22.19285994132196 78-79 22.121103201874377 28.014060350534503 27.623039928025033 22.24179651956609 80-81 22.098988016730598 28.03484061969354 27.654234343972135 22.21193701960373 82-83 22.15801864454938 28.04588074524077 27.717679849544712 22.078420760665143 84-85 22.225443524663493 28.001060260907796 27.671611350783426 22.101884863645285 86-87 22.10794444441017 28.002367544891733 27.704971110756006 22.184716899942096 88-89 22.159369957080834 28.00149920750057 27.665966566788576 22.17316426863002 90-91 22.189694082072062 28.040154671248363 27.67117758632268 22.098973660356897 92-93 22.17840750545653 28.021915404373733 27.7226631308052 22.077013959364542 94-95 22.077527750643817 28.062353254595507 27.729821507858983 22.130297486901696 96-97 22.12359871368802 28.168102740361412 27.823531683680446 21.88476686227012 98-99 22.321583046846214 28.880014392479346 26.914011304929865 21.884391255744575 100 20.421925493081723 28.671496654426743 28.0560206781156 22.850557174375936 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1538.0 1 1311.5 2 1790.0 3 2672.5 4 3728.0 5 6234.0 6 8264.0 7 9396.5 8 9993.0 9 9608.5 10 8819.5 11 8104.5 12 9008.5 13 12456.5 14 20194.0 15 31013.5 16 40204.0 17 45698.5 18 46693.0 19 43922.0 20 39184.0 21 33815.0 22 30376.0 23 30831.0 24 35176.5 25 43492.0 26 55803.0 27 69956.5 28 85835.5 29 105396.0 30 124738.0 31 143948.5 32 166615.5 33 188098.5 34 208053.5 35 227193.5 36 247470.5 37 265819.0 38 277972.0 39 288275.0 40 299399.0 41 308355.0 42 312850.5 43 316088.5 44 316072.5 45 317021.5 46 320393.0 47 320853.0 48 318050.5 49 311799.5 50 302905.5 51 290033.5 52 273411.0 53 255622.0 54 237926.5 55 219297.5 56 199552.5 57 177816.5 58 156049.5 59 134695.5 60 111296.0 61 89548.5 62 70308.5 63 53147.5 64 38890.5 65 28292.0 66 21095.0 67 16051.0 68 12053.5 69 8653.0 70 6231.5 71 4634.5 72 3299.0 73 2272.5 74 1606.0 75 1118.5 76 752.0 77 449.5 78 269.5 79 183.0 80 126.5 81 86.5 82 66.5 83 54.0 84 43.0 85 29.0 86 20.0 87 20.0 88 16.5 89 10.0 90 4.0 91 1.5 92 1.5 93 2.0 94 2.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.5909430792385108E-4 7 0.0 8 0.0 9 0.0 10-11 0.005409206469410937 12-13 6.119011843225043E-6 14-15 0.004264951254727855 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 101.0 20-21 453.0 22-23 935.0 24-25 1753.0 26-27 2439.0 28-29 3837.0 30-31 6692.0 32-33 8887.0 34-35 12325.0 36-37 15347.0 38-39 18977.0 40-41 22559.0 42-43 30668.0 44-45 37912.0 46-47 36298.0 48-49 29249.0 50-51 24038.0 52-53 23248.0 54-55 26124.0 56-57 28079.0 58-59 28788.0 60-61 29993.0 62-63 30684.0 64-65 33169.0 66-67 36155.0 68-69 36268.0 70-71 36973.0 72-73 36950.0 74-75 39622.0 76-77 39444.0 78-79 43800.0 80-81 46896.0 82-83 46985.0 84-85 48968.0 86-87 53462.0 88-89 59712.0 90-91 64507.0 92-93 70501.0 94-95 90580.0 96-97 283962.0 98-99 35726.0 100-101 6648188.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.04159979464507 #Duplication Level Percentage of deduplicated Percentage of total 1 87.15658394028924 71.50465579097599 2 8.773118938797532 14.395214258552969 3 2.3260526262355254 5.724992359886942 4 0.8522236808374921 2.796711766351554 5 0.3819284002749209 1.5667008482782037 6 0.18575043760159637 0.9143557838034216 7 0.1008428097674931 0.5791313808778537 8 0.06318397255425436 0.41469713517855783 9 0.0380807097006253 0.2811782110639283 >10 0.11887763008995585 1.4585288304288089 >50 0.002338312608416358 0.12609105962086734 >100 8.634718688967314E-4 0.14811513215488145 >500 1.2922452972050644E-4 0.06517977989676299 >1k 2.5844844374634637E-5 0.02444766292916273 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2238023686450085E-5 2 0.0 0.0 0.0 0.0 1.2238023686450085E-5 3 0.0 0.0 0.0 0.0 1.2238023686450085E-5 4 0.0 2.447604737290017E-5 0.0 1.2238023686450085E-5 1.2238023686450085E-5 5 0.0 2.447604737290017E-5 0.0 2.447604737290017E-5 1.2238023686450085E-5 6 0.0 2.447604737290017E-5 0.0 2.447604737290017E-5 2.447604737290017E-5 7 0.0 2.447604737290017E-5 0.0 2.447604737290017E-5 2.447604737290017E-5 8 0.0 2.447604737290017E-5 0.0 2.447604737290017E-5 4.895209474580034E-5 9 0.0 9.790418949160068E-5 0.0 6.119011843225042E-5 6.119011843225042E-5 10-11 4.895209474580034E-5 9.790418949160068E-5 0.0 9.178517764837563E-5 6.119011843225042E-5 12-13 7.34281421187005E-5 9.790418949160068E-5 0.0 1.2238023686450084E-4 6.119011843225042E-5 14-15 7.34281421187005E-5 1.8357035529675128E-4 0.0 1.2238023686450084E-4 1.0402320133482573E-4 16-17 8.566616580515059E-5 1.8357035529675128E-4 0.0 1.4685628423740104E-4 1.3461826055095094E-4 18-19 9.790418949160068E-5 2.0804640266965145E-4 0.0 1.7745134345352622E-4 1.590943079238511E-4 20-21 9.790418949160068E-5 2.2028442635610153E-4 0.0 1.9580837898320135E-4 1.590943079238511E-4 22-23 9.790418949160068E-5 2.3864146188577664E-4 0.0 2.019273908264264E-4 1.7133233161030118E-4 24-25 1.346182605509509E-4 2.8147454478835195E-4 0.0 2.0804640266965143E-4 1.9580837898320135E-4 26-27 1.5297529608062607E-4 2.93712568474802E-4 0.0 2.2640343819932656E-4 2.141654145128765E-4 28-29 1.590943079238511E-4 2.9983158031802705E-4 0.0 2.5699849741545175E-4 2.2640343819932656E-4 30-31 1.9580837898320135E-4 3.6714071059350256E-4 0.0 3.2430762769092725E-4 2.3864146188577664E-4 32-33 2.2028442635610153E-4 3.6714071059350256E-4 0.0 5.507110658902538E-4 2.569984974154518E-4 34-35 2.508794855722267E-4 4.160928053393029E-4 0.0 8.811377054244061E-4 2.8147454478835195E-4 36-37 2.8147454478835195E-4 4.650449000851032E-4 0.0 0.0013400635936662844 2.8147454478835195E-4 38-39 2.8147454478835195E-4 4.895209474580033E-4 0.0 0.002215082287247465 2.87593556631577E-4 40-41 2.8147454478835195E-4 5.507110658902538E-4 0.0 0.003077862957142196 2.93712568474802E-4 42-43 2.8147454478835195E-4 5.568300777334789E-4 0.0 0.004026309792842077 2.93712568474802E-4 44-45 2.998315803180271E-4 6.119011843225043E-4 0.0 0.005078779829876786 2.9983158031802705E-4 46-47 3.2430762769092725E-4 6.608532790683046E-4 0.0 0.006186320973500518 3.2430762769092725E-4 48-49 3.304266395341523E-4 6.608532790683046E-4 0.0 0.007869049230387405 3.7937873427995264E-4 50-51 3.304266395341523E-4 7.832335159328054E-4 0.0 0.009264183930642714 3.7937873427995264E-4 52-53 3.6102169875027747E-4 7.832335159328054E-4 0.0 0.010775579855919301 4.0997379349607787E-4 54-55 3.6714071059350256E-4 7.893525277760305E-4 0.0 0.012446070089119736 4.528068763986531E-4 56-57 3.6714071059350256E-4 8.077095633057056E-4 0.0 0.014324606724989825 4.650449000851032E-4 58-59 3.7937873427995264E-4 8.077095633057056E-4 0.0 0.016307166562194737 4.650449000851032E-4 60-61 3.916167579664027E-4 8.077095633057056E-4 0.0 0.018234655292810625 4.650449000851032E-4 62-63 3.916167579664027E-4 8.138285751489306E-4 0.0 0.020321238331350366 4.895209474580033E-4 64-65 3.916167579664027E-4 9.668038712295567E-4 0.0 0.022432297417263006 5.017589711444534E-4 66-67 3.916167579664027E-4 9.668038712295567E-4 0.0 0.0248737831427098 5.507110658902538E-4 68-69 3.916167579664027E-4 9.790418949160067E-4 0.0 0.027339744915529488 5.81306125106379E-4 70-71 4.038547816528528E-4 9.912799186024568E-4 0.0 0.029603779297522753 6.241392080089544E-4 72-73 4.038547816528528E-4 9.912799186024568E-4 0.0 0.03147619692154962 7.220433975005549E-4 74-75 4.038547816528528E-4 9.912799186024568E-4 0.0 0.03306102098894491 7.220433975005549E-4 76-77 4.038547816528528E-4 0.0010341130015050321 0.0 0.034474512724729886 7.281624093437801E-4 78-79 4.038547816528528E-4 0.0010647080607211574 0.0 0.03576562422365037 7.342814211870051E-4 80-81 4.038547816528528E-4 0.0010647080607211574 0.0 0.03627350220663805 7.465194448734552E-4 82-83 4.1609280533930285E-4 0.0010769460844076075 0.0 0.036640642917231556 8.444236343650559E-4 84-85 4.1609280533930285E-4 0.0010891841080940576 0.0 0.03676914216593928 8.444236343650559E-4 86-87 4.1609280533930285E-4 0.0010891841080940576 0.0 0.03683645129621475 8.444236343650559E-4 88 4.1609280533930285E-4 0.001150374226526308 0.0 0.03684868931990121 8.444236343650559E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10495 0.0 52.71754 1 GTATCAA 19240 0.0 38.923332 1 ATCAACG 23115 0.0 31.488049 3 TCAACGC 23120 0.0 31.384817 4 CAACGCA 23580 0.0 30.757906 5 AACGCAG 24335 0.0 29.822031 6 TATCAAC 24755 0.0 29.781721 2 ACGCAGA 27785 0.0 26.038532 7 CGCAGAG 28175 0.0 25.694311 8 GTACATG 24780 0.0 22.273111 1 TACATGG 24130 0.0 22.205265 2 GCAGAGT 33550 0.0 21.52567 9 ACATGGG 24270 0.0 21.32098 3 GAGTACT 20335 0.0 20.737436 12-13 AGAGTAC 30385 0.0 19.899744 10-11 CATGGGG 17415 0.0 19.612162 4 CAGAGTA 32775 0.0 19.384377 10-11 GTGGTAT 5345 0.0 18.424429 1 GTACTTT 23035 0.0 18.238834 14-15 AGTACTT 22020 0.0 18.093435 12-13 >>END_MODULE