##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138668_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7233167 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.62739474976867 33.0 33.0 33.0 33.0 33.0 2 32.641012159680535 33.0 33.0 33.0 33.0 33.0 3 32.641901949726865 33.0 33.0 33.0 33.0 33.0 4 36.550633491525915 37.0 37.0 37.0 37.0 37.0 5 36.57121133799344 37.0 37.0 37.0 37.0 37.0 6 36.552998845457324 37.0 37.0 37.0 37.0 37.0 7 36.51746558595979 37.0 37.0 37.0 37.0 37.0 8 36.51642454819583 37.0 37.0 37.0 37.0 37.0 9 36.55698022733334 37.0 37.0 37.0 37.0 37.0 10-11 36.480339801362256 37.0 37.0 37.0 37.0 37.0 12-13 36.479417038207465 37.0 37.0 37.0 37.0 37.0 14-15 38.57028069447311 40.0 37.0 40.0 37.0 40.0 16-17 38.50643556273483 40.0 37.0 40.0 37.0 40.0 18-19 38.52128230967155 40.0 37.0 40.0 37.0 40.0 20-21 38.50185973229647 40.0 37.0 40.0 37.0 40.0 22-23 38.508169560116244 40.0 37.0 40.0 37.0 40.0 24-25 38.49802044185628 40.0 37.0 40.0 37.0 40.0 26-27 38.389701409584205 40.0 37.0 40.0 37.0 40.0 28-29 38.32174499341167 40.0 37.0 40.0 37.0 40.0 30-31 38.275736320813806 40.0 37.0 40.0 37.0 40.0 32-33 38.21266427118698 40.0 37.0 40.0 37.0 40.0 34-35 38.17925891694372 40.0 37.0 40.0 37.0 40.0 36-37 38.12370876890033 40.0 37.0 40.0 37.0 40.0 38-39 38.06080233089355 40.0 37.0 40.0 33.0 40.0 40-41 38.04286649981745 40.0 37.0 40.0 33.0 40.0 42-43 38.00160237752358 40.0 37.0 40.0 33.0 40.0 44-45 37.93923289659318 40.0 37.0 40.0 33.0 40.0 46-47 37.90554084691449 40.0 37.0 40.0 33.0 40.0 48-49 37.88286500309327 40.0 37.0 40.0 33.0 40.0 50-51 37.78719829821167 40.0 37.0 40.0 33.0 40.0 52-53 37.685331974642395 40.0 37.0 40.0 33.0 40.0 54-55 37.49884877771339 40.0 37.0 40.0 33.0 40.0 56-57 37.419089092410516 40.0 37.0 40.0 33.0 40.0 58-59 37.30332230281505 40.0 37.0 40.0 33.0 40.0 60-61 37.16319019851998 37.0 37.0 40.0 33.0 40.0 62-63 37.00937578398965 37.0 37.0 40.0 33.0 40.0 64-65 36.83101814207512 37.0 37.0 40.0 33.0 40.0 66-67 36.631502098371676 37.0 37.0 40.0 33.0 40.0 68-69 36.43128282314194 37.0 37.0 40.0 33.0 40.0 70-71 36.163756614554316 37.0 37.0 38.5 33.0 40.0 72-73 35.939277443009416 37.0 37.0 37.0 33.0 40.0 74-75 35.743546858218245 37.0 35.0 37.0 33.0 40.0 76-77 34.123527923032725 35.0 33.0 37.0 30.0 37.0 78-79 35.201968277342985 37.0 33.0 37.0 33.0 37.0 80-81 35.250341882106994 37.0 33.0 37.0 33.0 37.0 82-83 35.120293655972674 37.0 33.0 37.0 33.0 37.0 84-85 34.95515576207632 37.0 33.0 37.0 33.0 37.0 86-87 34.87344110955512 37.0 33.0 37.0 33.0 37.0 88-89 34.77153730502859 37.0 33.0 37.0 33.0 37.0 90-91 34.65487878529733 37.0 33.0 37.0 33.0 37.0 92-93 34.62794391132414 37.0 33.0 37.0 33.0 37.0 94-95 34.654289260676705 37.0 33.0 37.0 33.0 37.0 96-97 34.64855028788626 37.0 33.0 37.0 33.0 37.0 98-99 34.64002133370473 37.0 33.0 37.0 33.0 37.0 100 34.65172467445381 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 7.0 20 49.0 21 295.0 22 1094.0 23 3132.0 24 7223.0 25 14163.0 26 24330.0 27 38063.0 28 55543.0 29 76625.0 30 102709.0 31 135395.0 32 178395.0 33 239773.0 34 330071.0 35 481264.0 36 846011.0 37 2078458.0 38 2571819.0 39 48747.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.74865131691277 20.639520696812337 14.615105665333042 23.99672232094185 2 14.137790541819372 21.193413618128822 42.0628197855794 22.605976054472404 3 17.426612713352256 26.939624095503394 31.091498371321997 24.542264819822353 4 12.023737320042521 18.802165082044976 39.17584095597405 29.998256641938447 5 12.984174152207464 38.16509421115259 35.89426319066047 12.956468445979471 6 29.059695770547833 38.40580581734758 19.268621082434382 13.265877329670204 7 25.900079453439968 33.00613686923031 23.36011321181994 17.733670465509782 8 24.34596076656325 36.577172903653405 21.53225551131337 17.544610818469973 9 25.495802875835714 16.759906137933772 20.960044196408017 36.7842467898225 10-11 23.854042975000024 26.740675948336097 29.24818118162343 20.157099895040453 12-13 24.974855412573774 24.269064989098137 28.9720533204888 21.784026277839292 14-15 22.135132823986744 25.790857463536387 26.43499395087269 25.639015761604174 16-17 21.735790145589064 28.97893135883632 27.06251632237995 22.222762173194674 18-19 21.763177872154756 27.92822286558571 28.680376106344564 21.62822315591497 20-21 22.638546208061328 27.10042109763 28.624947151957098 21.636085542351573 22-23 22.147450058517197 27.437288363847607 28.374939223900704 22.040322353734492 24-25 22.112539619322614 27.591532389660532 28.577970550328295 21.717957440688558 26-27 22.10809517288505 27.760883728457664 28.452251026023013 21.67877007263427 28-29 21.60834027916104 27.456382427506764 28.785823191456256 22.149454101875936 30-31 22.23881485707402 27.257034137871113 28.805115661104068 21.699035343950804 32-33 21.918799389990294 27.67434493276029 28.57369333148482 21.833162345764592 34-35 21.873458665576532 27.74181870796739 28.873803868943803 21.510918757512272 36-37 22.250978527334368 27.4860780215291 28.350931203984373 21.912012247152163 38-39 21.978031795380335 27.44031526249726 28.60015232122357 21.98150062089883 40-41 22.103017459000178 27.269111068648606 28.661489727840877 21.966381744510336 42-43 22.146578113267417 27.269855998399912 28.583620321709695 21.999945566622973 44-45 22.049152332478155 27.578733189289323 28.269525248509847 22.10258922972268 46-47 22.369421384364145 27.334927779603813 27.795664877909253 22.499985958122785 48-49 22.21414614899633 27.419324282173758 28.038298459781547 22.328231109048364 50-51 22.121637997947587 27.70542147571893 27.926051401097013 22.24688912523647 52-53 22.16539599059223 27.81216418289047 28.004340603586954 22.01809922293035 54-55 22.23260176079553 27.74879992074774 27.753405080513787 22.26519323794295 56-57 22.42796482624059 27.93938222574257 27.454508057563327 22.178144890453517 58-59 22.073025463962022 28.162954664413814 27.875010789814414 21.889009081809753 60-61 22.403891826302484 28.319805914516394 27.368768704765888 21.90753355441523 62-63 22.19105152297407 28.425639824253953 27.342850006873228 22.040458645898756 64-65 22.17954498682108 28.20057515643403 27.49002206186322 22.129857794881673 66-67 22.329368911699653 28.02331699220593 27.413175025466032 22.234139070628384 68-69 22.298923808188345 27.89185416222682 27.522684770912363 22.286537258672467 70-71 22.304813935208536 27.698928714388384 27.59744091550261 22.398816434900475 72-73 22.333265275515597 27.751745405866334 27.53954975288237 22.375439565735693 74-75 22.235074909449988 27.904124391022417 27.470566890235283 22.39023380929231 76-77 22.339749000652766 27.826286258107874 27.44276720808898 22.391197533150375 78-79 22.341422882764242 27.817969460383157 27.415357601981626 22.425250054870975 80-81 22.301724690342056 27.885558429145078 27.437055920725545 22.375660959787318 82-83 22.35978486740088 27.81224349218643 27.551214942591123 22.27675669782157 84-85 22.454725758742335 27.7806895732773 27.440521620201615 22.32406304777875 86-87 22.26131495312271 27.82384284571725 27.549488928277157 22.36535327288289 88-89 22.36688576739427 27.743577166330653 27.522732536559598 22.366804529715484 90-91 22.39257702618681 27.83361132416047 27.481206424190045 22.292605225462676 92-93 22.379718434195542 27.82117547171934 27.52288698257783 22.276219111507285 94-95 22.2293474873367 27.86225828715426 27.57042058068598 22.337973644823062 96-97 22.305585145952243 28.00330630729608 27.626469525375136 22.064639021376546 98-99 22.53418238306245 28.671932526017674 26.70816597121161 22.085719119708262 100 20.58136678895434 28.50989318051568 27.831510241578115 23.07722978895186 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1132.0 1 1031.0 2 1476.5 3 2127.5 4 2928.5 5 4864.0 6 6401.0 7 7282.5 8 7799.5 9 7566.5 10 6916.5 11 6257.0 12 6786.5 13 9225.0 14 14936.5 15 22932.0 16 29813.0 17 34177.5 18 35518.0 19 33688.0 20 29751.0 21 25691.5 22 23065.5 23 23380.0 24 26832.5 25 32990.5 26 42111.0 27 53632.0 28 66938.5 29 82348.0 30 99047.5 31 116523.5 32 136660.0 33 157659.0 34 178331.5 35 197908.0 36 218541.5 37 238300.5 38 250055.0 39 259644.5 40 270575.5 41 278396.0 42 283764.0 43 290234.0 44 295954.5 45 301078.5 46 310072.0 47 318841.5 48 316665.5 49 309854.5 50 303721.5 51 289982.0 52 268987.0 53 246018.5 54 224731.0 55 204180.5 56 184199.0 57 162296.5 58 140841.5 59 121152.0 60 100291.0 61 80550.5 62 63393.5 63 48478.0 64 35610.5 65 26287.0 66 19688.5 67 14872.5 68 11066.5 69 7831.0 70 5671.0 71 4190.0 72 2937.0 73 1926.5 74 1242.0 75 817.0 76 524.5 77 331.0 78 213.5 79 137.0 80 93.0 81 61.0 82 46.5 83 38.0 84 30.0 85 23.0 86 16.0 87 9.0 88 6.0 89 6.0 90 5.0 91 3.5 92 3.0 93 2.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.1060162166862731E-4 7 0.0 8 0.0 9 0.0 10-11 0.005260489630614086 12-13 0.0 14-15 0.004223599427470705 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 101.0 20-21 400.0 22-23 828.0 24-25 1916.0 26-27 2372.0 28-29 3879.0 30-31 8255.0 32-33 10632.0 34-35 14452.0 36-37 20403.0 38-39 25052.0 40-41 27431.0 42-43 33799.0 44-45 40994.0 46-47 39573.0 48-49 35463.0 50-51 31333.0 52-53 32429.0 54-55 41358.0 56-57 45605.0 58-59 44267.0 60-61 47110.0 62-63 47747.0 64-65 46201.0 66-67 50075.0 68-69 38907.0 70-71 38767.0 72-73 37450.0 74-75 38908.0 76-77 38455.0 78-79 42157.0 80-81 44100.0 82-83 43409.0 84-85 44216.0 86-87 47402.0 88-89 52689.0 90-91 55941.0 92-93 60319.0 94-95 78452.0 96-97 245239.0 98-99 32103.0 100-101 5642978.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.60468271557033 #Duplication Level Percentage of deduplicated Percentage of total 1 88.14227888119174 73.69107259689352 2 8.241162336541773 13.779995247081667 3 2.102991113876368 5.274597144878927 4 0.746788736225099 2.497401413906446 5 0.3296038770608437 1.3778213781746844 6 0.1554881019220774 0.7799720056344925 7 0.09400787054769424 0.550164873293447 8 0.05464620345328276 0.3654942801057767 9 0.035141873980415086 0.2644222701746844 >10 0.09515767141080465 1.19433572576358 >50 0.002183556866160302 0.11599998046189851 >100 5.231055837520535E-4 0.09458584151684632 >500 2.6671339947141335E-5 0.01413724211399836 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.3825202708578414E-5 0.0 0.0 0.0 3 0.0 1.3825202708578414E-5 0.0 0.0 0.0 4 0.0 2.7650405417156827E-5 0.0 1.3825202708578414E-5 1.3825202708578414E-5 5 0.0 2.7650405417156827E-5 0.0 1.3825202708578414E-5 1.3825202708578414E-5 6 0.0 2.7650405417156827E-5 0.0 1.3825202708578414E-5 1.3825202708578414E-5 7 0.0 2.7650405417156827E-5 0.0 1.3825202708578414E-5 1.3825202708578414E-5 8 0.0 4.147560812573524E-5 0.0 1.3825202708578414E-5 1.3825202708578414E-5 9 0.0 8.295121625147048E-5 0.0 1.3825202708578414E-5 1.3825202708578414E-5 10-11 0.0 8.295121625147048E-5 0.0 1.3825202708578414E-5 1.3825202708578414E-5 12-13 1.3825202708578414E-5 8.986381760575968E-5 0.0 1.3825202708578414E-5 1.3825202708578414E-5 14-15 1.3825202708578414E-5 1.5898983114865175E-4 0.0 1.3825202708578414E-5 1.3825202708578414E-5 16-17 1.3825202708578414E-5 1.797276352115194E-4 0.0 1.3825202708578414E-5 1.3825202708578414E-5 18-19 1.3825202708578414E-5 1.935528379200978E-4 0.0 1.3825202708578414E-5 1.3825202708578414E-5 20-21 1.3825202708578414E-5 2.4885364875441146E-4 0.0 2.073780406286762E-5 1.3825202708578414E-5 22-23 2.7650405417156827E-5 2.765040541715683E-4 0.0 2.7650405417156827E-5 1.3825202708578414E-5 24-25 2.7650405417156827E-5 3.041544595887251E-4 0.0 5.5300810834313655E-5 1.3825202708578414E-5 26-27 2.7650405417156827E-5 3.179796622973035E-4 0.0 6.221341218860287E-5 1.3825202708578414E-5 28-29 2.7650405417156827E-5 3.248922636515927E-4 0.0 1.3133942573149494E-4 1.3825202708578414E-5 30-31 2.7650405417156827E-5 3.456300677144603E-4 0.0 3.318048650058819E-4 1.3825202708578414E-5 32-33 4.147560812573524E-5 3.456300677144603E-4 0.0 7.603861489718128E-4 2.7650405417156827E-5 34-35 1.5207722979436255E-4 4.078434799030632E-4 0.0 0.0015000344938807578 2.7650405417156827E-5 36-37 1.5207722979436255E-4 4.907946961545337E-4 0.0 0.002737390136298526 2.7650405417156827E-5 38-39 1.797276352115194E-4 5.253577029259797E-4 0.0 0.004714394123625239 2.7650405417156827E-5 40-41 2.2120324333725462E-4 5.737459124060041E-4 0.0 0.0068227375366834465 2.7650405417156827E-5 42-43 2.2120324333725462E-4 6.221341218860286E-4 0.0 0.008675314699632954 2.7650405417156827E-5 44-45 2.2120324333725462E-4 7.050853381374992E-4 0.0 0.010756007707274005 2.7650405417156827E-5 46-47 2.3502844604583303E-4 7.603861489718128E-4 0.0 0.013203068586692386 2.7650405417156827E-5 48-49 2.4885364875441146E-4 7.880365543889696E-4 0.0 0.015643216864756476 4.147560812573524E-5 50-51 2.765040541715683E-4 9.33201182829043E-4 0.0 0.018311480987512112 4.147560812573524E-5 52-53 2.765040541715683E-4 9.677641896004889E-4 0.0 0.020938269502142007 4.8388209480024444E-5 54-55 2.834166555258575E-4 9.885019936633566E-4 0.0 0.023848474672297764 6.221341218860287E-5 56-57 2.903292568801467E-4 0.0010092397977262242 0.0 0.026876194065476436 6.912601354289207E-5 58-59 2.903292568801467E-4 0.0010299776017890917 0.0 0.02990391345865511 7.603861489718127E-5 60-61 3.041544595887251E-4 0.001071453209914827 0.0 0.033152836095171036 8.295121625147048E-5 62-63 3.041544595887251E-4 0.0011267540207491407 0.0 0.03580727501521809 9.67764189600489E-5 64-65 3.041544595887251E-4 0.0013203068586692384 0.0 0.038841907009751056 9.67764189600489E-5 66-67 3.041544595887251E-4 0.0013410446627321062 0.0 0.04202861623407838 9.67764189600489E-5 68-69 3.041544595887251E-4 0.0013548698654406847 0.0 0.045471091708514405 9.67764189600489E-5 70-71 3.041544595887251E-4 0.001368695068149263 0.0 0.04843659768950448 1.1060162166862731E-4 72-73 3.041544595887251E-4 0.001375607669503552 0.0 0.05094587198111146 1.1060162166862731E-4 74-75 3.041544595887251E-4 0.0014101706762749983 0.0 0.05306804059687824 1.1060162166862731E-4 76-77 3.041544595887251E-4 0.0014516462844007334 0.0 0.05511417059774784 1.2442682437720573E-4 78-79 3.041544595887251E-4 0.0014792966898178903 0.0 0.05662803029433718 1.2442682437720573E-4 80-81 3.041544595887251E-4 0.0014792966898178903 0.0 0.057132650193200296 1.3133942573149494E-4 82-83 3.110670609430143E-4 0.0014792966898178903 0.0 0.05762344488935483 1.3825202708578414E-4 84-85 3.179796622973035E-4 0.0014792966898178903 0.0 0.0577686095177949 1.3825202708578414E-4 86-87 3.179796622973035E-4 0.001506947095235047 0.0 0.057851560734046376 1.3825202708578414E-4 88 3.179796622973035E-4 0.0015622479060693607 0.0 0.05787229853810924 1.3825202708578414E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9260 0.0 46.67968 1 CTTATAC 6580 0.0 42.07771 1 GTATCAA 16395 0.0 37.507 1 TATACAC 9325 0.0 33.65643 3 ATCAACG 19105 0.0 31.311203 3 TCAACGC 19135 0.0 31.285547 4 CAACGCA 19465 0.0 30.714592 5 AACGCAG 20010 0.0 29.944044 6 TTATACA 9690 0.0 29.890244 2 TATCAAC 20150 0.0 29.883978 2 ACGCAGA 22725 0.0 26.308453 7 CGCAGAG 23165 0.0 25.790632 8 TACACAT 13385 0.0 22.958126 5 ACACATC 13045 0.0 21.93657 6 GTACATG 21965 0.0 21.8836 1 ACATCTC 13235 0.0 21.589132 8 GCAGAGT 27760 0.0 21.460398 9 TACATGG 21900 0.0 21.265173 2 ACATGGG 21895 0.0 20.52618 3 GAGTACT 14820 0.0 20.110731 12-13 >>END_MODULE