##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138667_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5660356 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.82593956987864 33.0 33.0 33.0 33.0 33.0 2 32.83137474038735 33.0 33.0 33.0 33.0 33.0 3 32.83070640786551 33.0 33.0 33.0 33.0 33.0 4 36.78102119371997 37.0 37.0 37.0 37.0 37.0 5 36.7903213154791 37.0 37.0 37.0 37.0 37.0 6 36.796835746726885 37.0 37.0 37.0 37.0 37.0 7 36.78281719383021 37.0 37.0 37.0 37.0 37.0 8 36.77948418792034 37.0 37.0 37.0 37.0 37.0 9 36.779044286260444 37.0 37.0 37.0 37.0 37.0 10-11 36.75731764927859 37.0 37.0 37.0 37.0 37.0 12-13 36.74167322691365 37.0 37.0 37.0 37.0 37.0 14-15 39.0775411475886 40.0 40.0 40.0 37.0 40.0 16-17 39.02958789164498 40.0 40.0 40.0 37.0 40.0 18-19 39.05528044525821 40.0 40.0 40.0 37.0 40.0 20-21 39.08038941260423 40.0 40.0 40.0 37.0 40.0 22-23 39.09811611601354 40.0 40.0 40.0 37.0 40.0 24-25 39.0058720226682 40.0 40.0 40.0 37.0 40.0 26-27 38.90434375419228 40.0 40.0 40.0 37.0 40.0 28-29 38.85840097826314 40.0 40.0 40.0 37.0 40.0 30-31 38.81041527995414 40.0 38.5 40.0 37.0 40.0 32-33 38.66168565726086 40.0 37.0 40.0 37.0 40.0 34-35 38.7456026042277 40.0 37.0 40.0 37.0 40.0 36-37 38.40705776288971 40.0 37.0 40.0 37.0 40.0 38-39 38.58500145111802 40.0 37.0 40.0 37.0 40.0 40-41 38.61620880650284 40.0 37.0 40.0 37.0 40.0 42-43 38.59398498046346 40.0 37.0 40.0 37.0 40.0 44-45 38.51550955996515 40.0 37.0 40.0 37.0 40.0 46-47 38.440770819665104 40.0 37.0 40.0 37.0 40.0 48-49 38.408937909356375 40.0 37.0 40.0 37.0 40.0 50-51 38.268837211235116 40.0 37.0 40.0 37.0 40.0 52-53 38.193447342352826 40.0 37.0 40.0 37.0 40.0 54-55 38.12244231990037 40.0 37.0 40.0 37.0 40.0 56-57 37.97753012842291 40.0 37.0 40.0 35.0 40.0 58-59 37.85850041653693 40.0 37.0 40.0 33.0 40.0 60-61 37.69387755386444 40.0 37.0 40.0 33.0 40.0 62-63 37.50406593051307 37.0 37.0 40.0 33.0 40.0 64-65 37.30366855308429 37.0 37.0 40.0 33.0 40.0 66-67 37.09029966377187 37.0 37.0 40.0 33.0 40.0 68-69 36.857236411996205 37.0 37.0 40.0 33.0 40.0 70-71 36.62258961370929 37.0 37.0 40.0 33.0 40.0 72-73 36.381500724328234 37.0 37.0 37.0 33.0 40.0 74-75 36.13619410092718 37.0 37.0 37.0 33.0 40.0 76-77 34.46934581889653 35.0 33.0 37.0 30.0 37.0 78-79 35.75642046701133 37.0 35.0 37.0 33.0 37.0 80-81 35.87382587005651 37.0 37.0 37.0 33.0 37.0 82-83 35.794618630098725 37.0 37.0 37.0 33.0 37.0 84-85 35.68118740436709 37.0 37.0 37.0 33.0 37.0 86-87 35.60243087831512 37.0 37.0 37.0 33.0 37.0 88-89 35.529251989961 37.0 37.0 37.0 33.0 37.0 90-91 35.460754618747785 37.0 33.0 37.0 33.0 37.0 92-93 35.399532035045894 37.0 33.0 37.0 33.0 37.0 94-95 35.35849625292113 37.0 33.0 37.0 33.0 37.0 96-97 35.3191904312296 37.0 33.0 37.0 33.0 37.0 98-99 35.281688499616656 37.0 33.0 37.0 33.0 37.0 100 35.19276445808982 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 6.0 20 19.0 21 106.0 22 458.0 23 1376.0 24 3193.0 25 6281.0 26 11120.0 27 17536.0 28 25334.0 29 35085.0 30 46244.0 31 61008.0 32 81649.0 33 111859.0 34 162239.0 35 253835.0 36 513986.0 37 1640036.0 38 2580284.0 39 108701.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.48535109805814 20.24181871246261 14.419658410177735 24.853171779301515 2 14.116832934182938 20.33183071877458 42.22532999691185 23.32600635013063 3 17.510904432316728 26.07175610253355 31.394571289608898 25.022768175540822 4 11.994660102822175 18.4346962557991 37.21256307113001 32.35808057024872 5 13.135574954578445 37.4202958566919 35.510311453016335 13.933817735713323 6 29.789539739196613 37.28398001821794 18.48207073901359 14.444409503571858 7 25.931195847045664 32.9083188407231 21.941499792592552 19.218985519638693 8 24.667194077545656 36.199030591008764 21.229795440428127 17.903979891017453 9 24.65124101734944 16.6351021031186 20.329251375708523 38.38440550382343 10-11 23.859550530037332 26.30263891529084 28.457715380446036 21.38009517422579 12-13 24.996493153434166 23.83832394994237 28.23274719823276 22.9324356983907 14-15 22.40753938444861 25.555318428734868 25.404762527303937 26.632379659512583 16-17 22.274703216546804 29.0775350525656 25.97634318406828 22.671418546819318 18-19 22.538732546150808 27.266014717095533 27.82544066132943 22.369812075424232 20-21 22.653497385182934 26.775131385701993 28.09214198047681 22.479229248638266 22-23 22.61824771103683 27.682924911619107 27.70223628534684 21.996591091997228 24-25 23.377160120012977 27.370800171043147 27.88247155046864 21.36956815847524 26-27 22.903584034353273 27.976768950532005 28.04070907922412 21.0789379358906 28-29 22.598564142874025 27.128617692086053 28.15713965151187 22.115678513528046 30-31 22.263745334077857 27.45768401530244 28.693871463410247 21.584699187209456 32-33 22.692282798242864 27.565474583354455 28.42598283902201 21.31625977938067 34-35 22.93059882487848 27.03182740956793 28.80841403102858 21.229159734525012 36-37 22.10824753279029 27.641677590879667 28.019406443198697 22.23066843313135 38-39 22.17234505900588 26.508323526884407 28.636682482823883 22.682648931285826 40-41 21.962029878955416 26.347518349523774 29.127165146120994 22.56328662539982 42-43 22.3447501278971 26.21000580965579 29.33169656607553 22.113547496371584 44-45 21.836831576388445 26.808341235463345 28.855850190114555 22.49897699803365 46-47 22.883983192427593 26.173938262228575 27.737818834311256 23.204259711032577 48-49 22.382073108308305 26.346049877672794 28.34967211153559 22.922204902483312 50-51 22.09472003307622 27.056426229887837 28.24778585782553 22.601067879210415 52-53 21.966884051512434 27.596178097544417 28.591173631641727 21.845764219301422 54-55 21.92458547696223 27.741910887400493 27.796068739959466 22.537434895677816 56-57 22.59404988140499 28.17684666749376 27.000259335999356 22.228844115101897 58-59 21.713567660663486 28.745041622040574 27.978733722588046 21.5626569947079 60-61 22.526267260545943 29.207964327585394 26.691968501595 21.573799910273667 62-63 21.890161800193123 29.649407805307042 26.672253718580112 21.78817667591972 64-65 21.9921436982564 29.147614997408837 26.87327279382409 21.986968510510675 66-67 22.214134838815287 28.508444108340612 26.999445352750783 22.277975700093318 68-69 22.33773296423638 27.98418240037584 27.22289102088983 22.45519361449795 70-71 22.399202107070273 27.577647598281878 27.391201058979764 22.631949235668085 72-73 22.53363578710633 27.553294817433926 27.29199338286706 22.62107601259268 74-75 22.34805060916739 27.736643886345018 27.297639125383665 22.617666379103923 76-77 22.4899599707974 27.610658511583946 27.23465107216559 22.664730445453067 78-79 22.4706900765331 27.61344869031707 27.216363006759604 22.699498226390226 80-81 22.47479239719911 27.685155758455632 27.220879697089018 22.619172147256243 82-83 22.499805229053436 27.635559177578976 27.339451289607865 22.525184303759723 84-85 22.66102931208628 27.643771665413258 27.179350752191688 22.51584827030877 86-87 22.521662427527854 27.63706120631332 27.314087357660565 22.52718900849826 88-89 22.564823355103833 27.608270223777943 27.25004939108913 22.57685703002909 90-91 22.625025581508307 27.689937093658777 27.215090719570412 22.469946605262507 92-93 22.648795124247 27.5691029257062 27.321678341444983 22.460423608601822 94-95 22.468450606126407 27.667095644189722 27.371618405304858 22.49283534437901 96-97 22.532163921326763 27.794954334844192 27.37831676044073 22.29456498338832 98-99 23.71843889288367 29.720675502129524 27.469124070733685 19.091761534253127 100 22.56961404252911 30.666028962606408 21.423999393430257 25.34035760143423 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1362.0 1 1250.5 2 1562.0 3 2157.5 4 2955.0 5 4733.0 6 6262.5 7 7447.5 8 8305.5 9 8297.0 10 7823.0 11 7242.5 12 7729.5 13 9856.5 14 14825.0 15 21585.0 16 26962.5 17 30042.0 18 30603.0 19 29053.5 20 26395.5 21 23767.5 22 22691.5 23 24173.0 24 28188.5 25 34567.5 26 42770.0 27 51852.0 28 61938.0 29 73357.0 30 84637.5 31 96001.0 32 107702.0 33 119306.0 34 130967.0 35 142336.0 36 154639.0 37 166414.0 38 175586.0 39 183141.5 40 190486.0 41 196997.5 42 202875.5 43 209775.5 44 220366.0 45 242667.5 46 269730.0 47 290765.0 48 288528.5 49 275879.5 50 269063.0 51 250095.0 52 226501.5 53 208669.0 54 195890.5 55 182420.0 56 167694.5 57 152428.0 58 136388.0 59 118911.0 60 98633.0 61 80388.5 62 64558.5 63 49830.5 64 37347.5 65 27945.0 66 21011.5 67 15933.0 68 12146.0 69 8623.0 70 5918.0 71 4231.5 72 2857.0 73 1767.0 74 1120.5 75 715.0 76 448.0 77 283.0 78 192.0 79 126.5 80 85.0 81 62.0 82 48.5 83 31.5 84 18.5 85 10.5 86 7.0 87 6.0 88 4.5 89 1.5 90 0.5 91 1.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 7.596695331530385E-4 4 0.018921071395509397 5 8.480031997987405E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.007872878895329944 26-27 0.050984595810512325 28-29 0.08441949546416572 30-31 0.07460614155986255 32-33 0.03512892305887183 34-35 0.00449511932405511 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.8664977407698056E-4 56-57 7.343290319688212E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 3.1902095446603285E-5 72-73 0.013859768535429034 74-75 0.028903006507611434 76-77 0.003981815430745702 78-79 0.0 80-81 0.0 82-83 0.010849946473223777 84-85 0.04964016254467077 86-87 0.040108711271951786 88-89 0.010096202053124923 90-91 1.1647798979489741E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 66.0 20-21 283.0 22-23 664.0 24-25 2183.0 26-27 2753.0 28-29 5249.0 30-31 12119.0 32-33 15340.0 34-35 20575.0 36-37 29869.0 38-39 34503.0 40-41 35564.0 42-43 40901.0 44-45 48498.0 46-47 46997.0 48-49 43379.0 50-51 38995.0 52-53 38238.0 54-55 51612.0 56-57 66500.0 58-59 67319.0 60-61 64784.0 62-63 68893.0 64-65 73363.0 66-67 79921.0 68-69 58789.0 70-71 42529.0 72-73 38436.0 74-75 39187.0 76-77 38668.0 78-79 40922.0 80-81 42169.0 82-83 40497.0 84-85 39630.0 86-87 41756.0 88-89 44735.0 90-91 47167.0 92-93 48732.0 94-95 58570.0 96-97 173382.0 98-99 336477.0 100-101 3640142.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.22933779882791 #Duplication Level Percentage of deduplicated Percentage of total 1 90.03495194324694 77.63654284815479 2 7.190878900267621 12.401294515232816 3 1.6460169060033023 4.2580484343102105 4 0.5761812198892579 1.9873490017268625 5 0.23554810947814583 1.0155578750033167 6 0.11576243641763367 0.5989270940562884 7 0.06674461590480146 0.4028740821775703 8 0.035195159251017676 0.24278842207516368 9 0.022035089052964228 0.17100640236377765 >10 0.07387545403268521 0.9804311009921283 >50 0.0017622144340147007 0.10156804352253646 >100 9.854298108960672E-4 0.17169598733508443 >500 6.252221069575066E-5 0.03191619304952012 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.3000199987421284E-5 0.0 0.0 0.0 3 0.0 5.3000199987421284E-5 0.0 0.0 0.0 4 0.0 8.833366664570214E-5 0.0 0.0 0.0 5 0.0 8.833366664570214E-5 0.0 0.0 0.0 6 0.0 8.833366664570214E-5 0.0 0.0 0.0 7 0.0 8.833366664570214E-5 0.0 0.0 0.0 8 0.0 1.4133386663312344E-4 0.0 0.0 0.0 9 0.0 2.2966753327882558E-4 0.0 1.766673332914043E-5 0.0 10-11 1.766673332914043E-5 2.2966753327882558E-4 0.0 1.766673332914043E-5 0.0 12-13 1.766673332914043E-5 2.2966753327882558E-4 0.0 2.6500099993710645E-5 0.0 14-15 1.766673332914043E-5 3.180011999245277E-4 0.0 3.533346665828086E-5 0.0 16-17 1.766673332914043E-5 3.4450129991823834E-4 0.0 5.3000199987421284E-5 0.0 18-19 1.766673332914043E-5 3.886681332410894E-4 0.0 6.18335666519915E-5 0.0 20-21 1.766673332914043E-5 4.328349665639405E-4 0.0 8.833366664570214E-5 0.0 22-23 1.766673332914043E-5 5.035018998805022E-4 0.0 8.833366664570214E-5 0.0 24-25 1.766673332914043E-5 5.476687332033534E-4 0.0 1.0600039997484257E-4 0.0 26-27 1.766673332914043E-5 5.653354665324938E-4 0.0 1.6783396662683407E-4 0.0 28-29 1.766673332914043E-5 5.653354665324938E-4 0.0 6.890025998364767E-4 0.0 30-31 1.766673332914043E-5 6.18335666519915E-4 0.0 0.0025793430660545026 0.0 32-33 1.766673332914043E-5 6.360023998490554E-4 0.0 0.006095022998553448 0.0 34-35 1.766673332914043E-5 7.773362664821788E-4 0.0 0.010229038597572309 0.0 36-37 1.766673332914043E-5 8.833366664570214E-4 0.0 0.016253394662809194 0.0 38-39 1.766673332914043E-5 8.833366664570214E-4 0.0 0.030448614892773528 0.0 40-41 1.766673332914043E-5 9.89337066431864E-4 0.0 0.04514733702261836 0.0 42-43 1.766673332914043E-5 9.981704330964342E-4 0.0 0.05621554545332484 0.0 44-45 1.766673332914043E-5 0.0011218375664004171 0.0 0.06867059245036886 0.0 46-47 1.766673332914043E-5 0.0012543380663689705 0.0 0.08071930458084262 0.0 48-49 1.766673332914043E-5 0.0012543380663689705 0.0 0.09272384987799354 0.0 50-51 1.766673332914043E-5 0.001484005599647796 0.0 0.10423372664192852 0.0 52-53 1.766673332914043E-5 0.0015016723329769365 0.0 0.12903782023604168 0.0 54-55 1.766673332914043E-5 0.0015105056996415067 0.0 0.15764026149592003 0.0 56-57 1.766673332914043E-5 0.0015370057996352173 0.0 0.18686103842231833 0.0 58-59 1.766673332914043E-5 0.0015370057996352173 0.0 0.20788445108399542 0.0 60-61 1.766673332914043E-5 0.0015370057996352173 0.0 0.223554843546943 0.0 62-63 1.766673332914043E-5 0.001563505899628928 0.0 0.2356742226107333 0.0 64-65 1.766673332914043E-5 0.0017666733329140428 0.0 0.24065624140955091 0.0 66-67 1.766673332914043E-5 0.0017843400662431834 0.0 0.2458855944749765 0.0 68-69 1.766673332914043E-5 0.0018285068995660344 0.0 0.2511326142737312 0.0 70-71 2.6500099993710645E-5 0.0018726737328888855 0.0 0.25622063347252366 0.0 72-73 3.533346665828086E-5 0.0018726737328888855 0.0 0.2601956484715803 0.0 74-75 3.533346665828086E-5 0.0019256739328763067 0.0 0.26322549323752786 0.0 76-77 3.533346665828086E-5 0.0020316743328511492 0.0 0.2660345038368611 0.0 78-79 3.533346665828086E-5 0.002102341266167711 0.0 0.26796901113640204 0.0 80-81 3.533346665828086E-5 0.002102341266167711 0.0 0.26845484630295335 0.0 82-83 3.533346665828086E-5 0.002111174632832281 0.0 0.26888768126951734 0.0 84-85 3.533346665828086E-5 0.0021288413661614217 0.0 0.2692056824694419 0.0 86-87 3.533346665828086E-5 0.002155341466155132 0.0 0.26925868266942926 0.0 88 3.533346665828086E-5 0.0022790085994591155 0.0 0.26925868266942926 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 10865 0.0 54.104584 1 GGTATCA 7355 0.0 48.81423 1 TATACAC 14015 0.0 43.53766 3 TTATACA 13605 0.0 43.48687 2 GTATCAA 12985 0.0 35.73016 1 TACACAT 19575 0.0 30.950392 5 TCAACGC 15505 0.0 29.325083 4 ATCAACG 15550 0.0 29.131823 3 CAACGCA 16000 0.0 28.307238 5 TATCAAC 16195 0.0 28.205767 2 ATACACA 22235 0.0 28.162502 4 ACACATC 21105 0.0 27.947815 6 AACGCAG 16565 0.0 27.494093 6 ACATCTC 22450 0.0 26.254667 8 CACATCT 23130 0.0 25.246012 7 ACGCAGA 18790 0.0 24.103874 7 CGCAGAG 19120 0.0 23.70989 8 CATCTCC 26035 0.0 22.526142 9 GTGGTAT 3990 0.0 21.967468 1 TGGTATC 3815 0.0 20.655542 2 >>END_MODULE