##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138665_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6314967 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.83214179899911 33.0 33.0 33.0 33.0 33.0 2 32.824837564471835 33.0 33.0 33.0 33.0 33.0 3 32.83024788569758 33.0 33.0 33.0 33.0 33.0 4 36.78087818986228 37.0 37.0 37.0 37.0 37.0 5 36.79199131206862 37.0 37.0 37.0 37.0 37.0 6 36.80156222510743 37.0 37.0 37.0 37.0 37.0 7 36.78917102813047 37.0 37.0 37.0 37.0 37.0 8 36.78341201149586 37.0 37.0 37.0 37.0 37.0 9 36.78286394845769 37.0 37.0 37.0 37.0 37.0 10-11 36.75983294924582 37.0 37.0 37.0 37.0 37.0 12-13 36.74429692189999 37.0 37.0 37.0 37.0 37.0 14-15 39.10307251011763 40.0 40.0 40.0 37.0 40.0 16-17 39.05811091332703 40.0 40.0 40.0 37.0 40.0 18-19 39.06901081193298 40.0 40.0 40.0 37.0 40.0 20-21 39.10350053202167 40.0 40.0 40.0 37.0 40.0 22-23 39.12375695820279 40.0 40.0 40.0 37.0 40.0 24-25 39.039387989971104 40.0 40.0 40.0 37.0 40.0 26-27 38.962775089614624 40.0 40.0 40.0 37.0 40.0 28-29 38.9380498670111 40.0 40.0 40.0 37.0 40.0 30-31 38.89939030700751 40.0 40.0 40.0 37.0 40.0 32-33 38.7560214815589 40.0 40.0 40.0 37.0 40.0 34-35 38.83635151590936 40.0 40.0 40.0 37.0 40.0 36-37 38.52904895249789 40.0 37.0 40.0 37.0 40.0 38-39 38.71350686425356 40.0 37.0 40.0 37.0 40.0 40-41 38.719326109581985 40.0 37.0 40.0 37.0 40.0 42-43 38.66528387033326 40.0 37.0 40.0 37.0 40.0 44-45 38.58917640723293 40.0 37.0 40.0 37.0 40.0 46-47 38.5160413678802 40.0 37.0 40.0 37.0 40.0 48-49 38.467616357535235 40.0 37.0 40.0 37.0 40.0 50-51 38.409756060137454 40.0 37.0 40.0 37.0 40.0 52-53 38.348985342236645 40.0 37.0 40.0 37.0 40.0 54-55 38.26732516032475 40.0 37.0 40.0 37.0 40.0 56-57 38.14658420039888 40.0 37.0 40.0 37.0 40.0 58-59 38.01451463798737 40.0 37.0 40.0 37.0 40.0 60-61 37.85810687898304 40.0 37.0 40.0 33.0 40.0 62-63 37.66291770750458 38.5 37.0 40.0 33.0 40.0 64-65 37.44132293984808 37.0 37.0 40.0 33.0 40.0 66-67 37.202799478066105 37.0 37.0 40.0 33.0 40.0 68-69 36.94178501191471 37.0 37.0 40.0 33.0 40.0 70-71 36.68098916817081 37.0 37.0 40.0 33.0 40.0 72-73 36.423013530474186 37.0 37.0 37.0 33.0 40.0 74-75 36.170043579822135 37.0 37.0 37.0 33.0 40.0 76-77 34.50007661278466 35.0 33.0 37.0 30.0 37.0 78-79 35.7826160363409 37.0 35.0 37.0 33.0 37.0 80-81 35.89238450466647 37.0 37.0 37.0 33.0 37.0 82-83 35.810035919101495 37.0 37.0 37.0 33.0 37.0 84-85 35.69234475229405 37.0 37.0 37.0 33.0 37.0 86-87 35.603469033471114 37.0 37.0 37.0 33.0 37.0 88-89 35.51949093365948 37.0 37.0 37.0 33.0 37.0 90-91 35.446825443993475 37.0 33.0 37.0 33.0 37.0 92-93 35.3795293819758 37.0 33.0 37.0 33.0 37.0 94-95 35.326617872719076 37.0 33.0 37.0 33.0 37.0 96-97 35.28678515735599 37.0 33.0 37.0 33.0 37.0 98-99 35.25058060463019 37.0 33.0 37.0 33.0 37.0 100 35.16018394993332 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 1.0 20 18.0 21 69.0 22 320.0 23 967.0 24 2433.0 25 5209.0 26 9694.0 27 15991.0 28 24433.0 29 35149.0 30 48847.0 31 66641.0 32 90128.0 33 123951.0 34 177917.0 35 278314.0 36 555485.0 37 1749898.0 38 2993473.0 39 136028.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.59640628367496 19.691488490755376 13.226846632769417 24.485258592800246 2 15.144180484236895 20.571857303450674 40.838693218824424 23.44526899348801 3 18.615292257812886 24.9401694811384 30.200520323215446 26.24401793783327 4 12.484262519780245 16.88899891332392 38.40445668651066 32.222281880385175 5 13.327310559753727 37.52761713529229 35.70631140220304 13.438760902750946 6 31.188888239637674 37.17311586901405 18.079207698155823 13.55878819319246 7 26.985065796860063 32.318712037608435 22.744046010058327 17.95217615547318 8 24.75184747600423 36.660809153872066 20.940125261145464 17.64721810897824 9 25.596459965665698 16.168572218983883 21.18031654005476 37.054651275295655 10-11 24.545852733672245 26.47551444053469 28.66779826402893 20.31083456176414 12-13 24.893122956937066 24.05459917684447 28.93814805366362 22.11412981255484 14-15 21.976765674309938 25.506126952048998 26.457454171969548 26.059653201671523 16-17 21.803075138793282 28.57356182542205 27.352541984779965 22.2708210510047 18-19 21.82517343321034 27.852014111871053 28.870918882078083 21.451893572840522 20-21 22.46295074013007 27.13759312197498 28.849292364837343 21.550163773057605 22-23 22.22555144048693 27.08374838584823 28.664880713511305 22.025819460153535 24-25 22.05722481098806 27.11420995631052 28.781414933499512 22.047150299201913 26-27 21.98624517716878 27.32960809193385 28.71029771310674 21.973849017790627 28-29 21.93290042173772 27.43500871363846 28.71762138497065 21.914469479653167 30-31 22.15078672280224 27.28843758795021 28.630922272000088 21.929853417247465 32-33 21.95128632461243 27.434634629915756 28.598028764497535 22.01605028097428 34-35 22.11488332612732 27.428230569870177 28.592369381837706 21.864516722164797 36-37 22.164085159555373 27.41355718238377 28.45998417834295 21.962373479717908 38-39 21.943106344003436 27.526456410606563 28.601649462710533 21.92878778267947 40-41 22.208538898550497 27.424237208282946 28.447939171820902 21.91928472134565 42-43 22.049890610902345 27.52143612287489 28.37125639025406 22.05741687596871 44-45 22.147693970506463 27.633340520665566 28.175963427148282 22.04300208167969 46-47 22.173200071277606 27.59967148141381 27.940512438535386 22.286616008773194 48-49 22.167975464024895 27.685693261337878 27.928281014760337 22.218050259876886 50-51 22.086247269773875 27.82928712424466 27.871547590178853 22.212918015802604 52-53 22.257839777450428 27.782167775385325 27.696550668641294 22.263441778522957 54-55 22.269155863752623 27.690504532995377 27.758100391220648 22.282239212031353 56-57 22.22609521526601 27.739955034899683 27.74962879455185 22.284320955282457 58-59 22.162137659913764 27.770083826441677 27.71878984145424 22.348988672190323 60-61 22.385103053159547 27.63952062832769 27.86767235338336 22.1077039651294 62-63 22.122681658899623 27.743331805365802 27.81251436653992 22.321472169194656 64-65 22.099768221719007 27.73454335680293 27.767862948056198 22.39782547342186 66-67 22.13997059231264 27.800554973512625 27.83240799870915 22.22706643546558 68-69 22.137009649236685 27.94698896771034 27.70665321562571 22.20934816742727 70-71 22.134552149710693 27.752616578249555 27.523170426132566 22.589660845907183 72-73 22.168601989740377 27.778195043704912 27.505399899756284 22.547803066798426 74-75 22.07764877785366 27.945134822189598 27.668167548136736 22.309048851820005 76-77 22.20697381826884 27.70344088085756 27.571519870113242 22.518065430760362 78-79 22.177569438803832 27.70079082928245 27.297335603774652 22.824304128139065 80-81 22.336545943815192 27.95750931028128 27.348954297673345 22.35699044823018 82-83 22.387020718963488 27.716929732682118 27.440341747254955 22.455707801099443 84-85 22.31631962402833 27.65486798237797 27.382917158180486 22.64589523541321 86-87 22.16305122204823 27.92224438554679 27.417509673512974 22.497194718892004 88-89 22.41402668164236 27.939858279588858 27.426543690902683 22.2195713478661 90-91 22.41495060243858 27.999232978161437 27.371377561778004 22.214438857621982 92-93 22.244825545784717 27.70561834994122 27.447743740028645 22.60181236424542 94-95 22.340509729802662 28.012163647856646 27.487589757579546 22.159736864761143 96-97 22.68937933641505 27.82522054816508 27.55505748385118 21.930342631568685 98-99 23.442171874703195 29.835424732753545 27.90875868218121 18.813644710362052 100 22.309232467485813 30.850690239915462 21.765975078586592 25.07410221401213 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1791.0 1 1504.5 2 1712.0 3 2411.0 4 3193.5 5 4866.0 6 6411.0 7 7701.5 8 8655.5 9 8696.0 10 8041.0 11 7457.5 12 8104.0 13 10342.0 14 15474.0 15 22201.0 16 27375.0 17 30167.5 18 31096.5 19 30677.5 20 29425.0 21 28483.0 22 29059.0 23 32076.0 24 37603.5 25 45783.5 26 56317.5 27 67358.5 28 77752.5 29 89293.0 30 101325.0 31 112717.0 32 125775.0 33 139297.5 34 152520.5 35 166039.0 36 180227.0 37 193479.5 38 203266.0 39 212208.0 40 222242.0 41 231544.0 42 238695.5 43 244830.5 44 250889.0 45 256906.0 46 262162.0 47 265327.5 48 266545.0 49 266171.0 50 263210.0 51 256168.0 52 246124.5 53 234230.5 54 221418.5 55 208652.5 56 193788.0 57 176630.5 58 159323.0 59 140152.5 60 118183.5 61 96915.5 62 77939.5 63 61101.5 64 46312.5 65 34438.5 66 25966.5 67 19993.0 68 15278.5 69 11238.5 70 8226.0 71 6001.0 72 4284.5 73 2990.5 74 2058.5 75 1414.5 76 971.5 77 619.0 78 380.5 79 247.5 80 183.0 81 143.0 82 104.5 83 65.0 84 40.0 85 26.5 86 20.5 87 14.5 88 8.5 89 6.5 90 6.0 91 5.5 92 4.5 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 7.28428192894753E-4 4 0.019287511716213245 5 7.442635883924651E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.007420689500056982 26-27 0.05128617471601093 28-29 0.08609027667401394 30-31 0.07649933334026737 32-33 0.035216382941547095 34-35 0.004313036688527107 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.334762582748958E-4 56-57 6.367718285164743E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 4.6367724057884353E-5 72-73 0.013296632131629916 74-75 0.02914694711246752 76-77 0.0037305938752426435 78-79 0.0 80-81 0.0 82-83 0.01090886055230115 84-85 0.05079970034833513 86-87 0.041643899193860835 88-89 0.010715104349997518 90-91 1.5397898638507538E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 80.0 20-21 297.0 22-23 675.0 24-25 1767.0 26-27 3182.0 28-29 7774.0 30-31 15628.0 32-33 19598.0 34-35 27106.0 36-37 40205.0 38-39 43970.0 40-41 44263.0 42-43 50630.0 44-45 59526.0 46-47 59351.0 48-49 54308.0 50-51 47290.0 52-53 45088.0 54-55 49417.0 56-57 51575.0 58-59 29243.0 60-61 50742.0 62-63 48640.0 64-65 50867.0 66-67 54245.0 68-69 54531.0 70-71 52740.0 72-73 49603.0 74-75 49857.0 76-77 50263.0 78-79 53241.0 80-81 53456.0 82-83 50798.0 84-85 50426.0 86-87 53138.0 88-89 56073.0 90-91 58470.0 92-93 59940.0 94-95 70567.0 96-97 221747.0 98-99 382667.0 100-101 4091983.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.37469888965667 #Duplication Level Percentage of deduplicated Percentage of total 1 90.89675533883118 79.42076627777166 2 6.707463338933857 11.721251791055137 3 1.4157322933504677 3.710975485195806 4 0.47400698136485797 1.6566486907339826 5 0.2010821124677825 0.8784744514484286 6 0.1119326541241684 0.586804917001158 7 0.057044904593301235 0.34889969534202214 8 0.035863632794382955 0.25068592931987416 9 0.023939734369988572 0.18825543738685044 >10 0.07372651398777051 0.9952425686258408 >50 0.002019942812598577 0.11842776503840335 >100 3.7985078712777945E-4 0.07940710383976518 >500 2.6350791289915485E-5 0.019938718655628393 >1k 2.635079125127782E-5 0.02422116858540998 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.167079099542405E-5 0.0 0.0 0.0 3 0.0 3.167079099542405E-5 0.0 0.0 0.0 4 0.0 4.750618649313607E-5 0.0 1.5835395497712024E-5 0.0 5 0.0 4.750618649313607E-5 0.0 1.5835395497712024E-5 0.0 6 1.266831639816962E-4 4.750618649313607E-5 0.0 1.5835395497712024E-5 0.0 7 1.266831639816962E-4 4.750618649313607E-5 0.0 3.167079099542405E-5 0.0 8 1.266831639816962E-4 4.750618649313607E-5 0.0 3.167079099542405E-5 0.0 9 1.266831639816962E-4 9.501237298627214E-5 0.0 4.750618649313607E-5 0.0 10-11 1.266831639816962E-4 9.501237298627214E-5 0.0 8.709467523741613E-5 0.0 12-13 1.266831639816962E-4 9.501237298627214E-5 0.0 1.1084776848398416E-4 0.0 14-15 1.266831639816962E-4 1.504362572282642E-4 0.0 1.5835395497712022E-4 2.3753093246568034E-5 16-17 1.7418935047483226E-4 1.5835395497712022E-4 0.0 1.5835395497712022E-4 3.167079099542405E-5 18-19 1.9002474597254427E-4 1.5835395497712022E-4 0.0 1.7418935047483226E-4 3.958848874428006E-5 20-21 1.9002474597254427E-4 1.5835395497712022E-4 0.0 2.2169553696796832E-4 4.750618649313607E-5 22-23 1.9002474597254427E-4 1.9002474597254427E-4 0.0 2.2169553696796832E-4 4.750618649313607E-5 24-25 1.9002474597254427E-4 2.1377783921911232E-4 0.0 2.929548167076724E-4 4.750618649313607E-5 26-27 1.9002474597254427E-4 2.2169553696796832E-4 0.0 4.1172028294051257E-4 4.750618649313607E-5 28-29 1.9002474597254427E-4 2.2169553696796832E-4 0.0 0.0011876546623284018 4.750618649313607E-5 30-31 1.9002474597254427E-4 2.3753093246568034E-4 0.0 0.0036817294532180455 4.750618649313607E-5 32-33 1.9002474597254427E-4 2.3753093246568034E-4 0.0 0.007410965092929227 4.750618649313607E-5 34-35 2.058601414702563E-4 3.246256077030965E-4 0.0 0.011781534250297744 4.750618649313607E-5 36-37 2.058601414702563E-4 4.117202829405126E-4 0.0 0.01919249934322697 4.750618649313607E-5 38-39 2.058601414702563E-4 4.2755567843822463E-4 0.0 0.03593843008205744 4.750618649313607E-5 40-41 2.058601414702563E-4 4.5922646943364866E-4 0.0 0.053982863251700285 4.750618649313607E-5 42-43 2.2169553696796832E-4 4.5922646943364866E-4 0.0 0.06543185419654608 5.542388424199208E-5 44-45 2.2169553696796832E-4 4.7506186493136073E-4 0.0 0.08004000654318541 6.33415819908481E-5 46-47 2.2169553696796832E-4 5.067326559267848E-4 0.0 0.09458481730783391 6.33415819908481E-5 48-49 2.2169553696796832E-4 5.067326559267848E-4 0.0 0.1084803768570762 7.917697748856011E-5 50-51 2.4544863021453637E-4 5.700742379176328E-4 0.0 0.12279557438700789 7.917697748856011E-5 52-53 2.533663279633924E-4 5.700742379176328E-4 0.0 0.15251861173621334 7.917697748856011E-5 54-55 2.533663279633924E-4 5.938273311642008E-4 0.0 0.18961302568960375 7.917697748856011E-5 56-57 2.533663279633924E-4 6.175804244107689E-4 0.0 0.22828306149501654 7.917697748856011E-5 58-59 2.533663279633924E-4 6.33415819908481E-4 0.0 0.4329080421164513 7.917697748856011E-5 60-61 2.533663279633924E-4 6.65086610903905E-4 0.0 0.622251866082594 7.917697748856011E-5 62-63 2.850371189588164E-4 6.80922006401617E-4 0.0 0.6293065347768246 7.917697748856011E-5 64-65 2.850371189588164E-4 7.759343793878891E-4 0.0 0.6360920017475942 7.917697748856011E-5 66-67 3.1670790995424043E-4 7.759343793878891E-4 0.0 0.642647855483647 7.917697748856011E-5 68-69 3.1670790995424043E-4 7.838520771367452E-4 0.0 0.6492987215926861 7.917697748856011E-5 70-71 3.4046100320080845E-4 7.917697748856011E-4 0.0 0.6548490277146342 7.917697748856011E-5 72-73 4.117202829405126E-4 7.917697748856011E-4 0.0 0.6594412924089705 1.1084776848398416E-4 74-75 4.117202829405126E-4 8.313582636298812E-4 0.0 0.6627825608589879 1.1084776848398416E-4 76-77 4.117202829405126E-4 8.551113568764493E-4 0.0 0.6660446523315166 1.1084776848398416E-4 78-79 4.117202829405126E-4 8.551113568764493E-4 0.0 0.6680399121642282 1.1084776848398416E-4 80-81 4.117202829405126E-4 8.709467523741613E-4 0.0 0.6686654102863878 1.1876546623284018E-4 82-83 4.117202829405126E-4 8.709467523741613E-4 0.0 0.6691642252445658 1.266831639816962E-4 84-85 4.117202829405126E-4 8.709467523741613E-4 0.0 0.669322579199543 1.425185594794082E-4 86-87 4.117202829405126E-4 8.867821478718733E-4 0.0 0.669370085386036 1.5835395497712022E-4 88 4.117202829405126E-4 9.659591253604334E-4 0.0 0.6693780030837849 1.5835395497712022E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7480 0.0 50.64201 1 GTATCAA 12000 0.0 32.237736 1 CGAGACC 4605 0.0 27.914747 86-87 AGACCGA 4655 0.0 27.910086 88-89 GACCGAG 4695 0.0 27.416891 90-91 GAGACCG 4655 0.0 27.121323 88-89 ACCGAGG 4895 0.0 26.766275 90-91 TCAACGC 14105 0.0 26.669308 5 ACGAGAC 4765 0.0 26.567787 86-87 ATCAACG 14340 0.0 26.327133 4 CAACGCA 14435 0.0 26.030272 6 CCCACGA 4915 0.0 25.854052 82-83 CACGAGA 5130 0.0 25.124977 84-85 AACGCAG 15065 0.0 24.969837 7 TATCAAC 15305 0.0 24.916336 3 TCTCCGA 4925 0.0 24.727678 74-75 GCCCACG 5005 0.0 24.68238 82-83 ATCTCCG 4840 0.0 24.515387 74-75 TCCGAGC 5045 0.0 24.391434 76-77 CGAGCCC 5555 0.0 22.624247 78-79 >>END_MODULE