##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138663_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5997366 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.84089965494852 33.0 33.0 33.0 33.0 33.0 2 32.837020618718284 33.0 33.0 33.0 33.0 33.0 3 32.835974993021935 33.0 33.0 33.0 33.0 33.0 4 36.79118999907626 37.0 37.0 37.0 37.0 37.0 5 36.80100647517594 37.0 37.0 37.0 37.0 37.0 6 36.81033573738871 37.0 37.0 37.0 37.0 37.0 7 36.800866413688944 37.0 37.0 37.0 37.0 37.0 8 36.79566913208232 37.0 37.0 37.0 37.0 37.0 9 36.79082700638914 37.0 37.0 37.0 37.0 37.0 10-11 36.76999861272432 37.0 37.0 37.0 37.0 37.0 12-13 36.75713579928255 37.0 37.0 37.0 37.0 37.0 14-15 39.12397459151234 40.0 40.0 40.0 37.0 40.0 16-17 39.08510511114379 40.0 40.0 40.0 37.0 40.0 18-19 39.10760015313389 40.0 40.0 40.0 37.0 40.0 20-21 39.14311069464155 40.0 40.0 40.0 37.0 40.0 22-23 39.164161208187 40.0 40.0 40.0 37.0 40.0 24-25 39.07728148375904 40.0 40.0 40.0 37.0 40.0 26-27 39.00199551926396 40.0 40.0 40.0 37.0 40.0 28-29 38.977807458372084 40.0 40.0 40.0 37.0 40.0 30-31 38.93368840013051 40.0 40.0 40.0 37.0 40.0 32-33 38.78758700807019 40.0 40.0 40.0 37.0 40.0 34-35 38.86813131884237 40.0 40.0 40.0 37.0 40.0 36-37 38.5628491558097 40.0 37.0 40.0 37.0 40.0 38-39 38.74308830310566 40.0 37.0 40.0 37.0 40.0 40-41 38.75192682242173 40.0 37.0 40.0 37.0 40.0 42-43 38.70140228545601 40.0 37.0 40.0 37.0 40.0 44-45 38.61972254153676 40.0 37.0 40.0 37.0 40.0 46-47 38.547483382095834 40.0 37.0 40.0 37.0 40.0 48-49 38.501132477010955 40.0 37.0 40.0 37.0 40.0 50-51 38.43847641740389 40.0 37.0 40.0 37.0 40.0 52-53 38.37776495087264 40.0 37.0 40.0 37.0 40.0 54-55 38.29878761577625 40.0 37.0 40.0 37.0 40.0 56-57 38.17884623813063 40.0 37.0 40.0 37.0 40.0 58-59 38.04785569651713 40.0 37.0 40.0 37.0 40.0 60-61 37.89241560629124 40.0 37.0 40.0 35.0 40.0 62-63 37.702866115845595 38.5 37.0 40.0 33.0 40.0 64-65 37.483866312095344 37.0 37.0 40.0 33.0 40.0 66-67 37.244509889513694 37.0 37.0 40.0 33.0 40.0 68-69 36.99097248864785 37.0 37.0 40.0 33.0 40.0 70-71 36.73974578684727 37.0 37.0 40.0 33.0 40.0 72-73 36.487779933230584 37.0 37.0 38.5 33.0 40.0 74-75 36.23515975366018 37.0 37.0 37.0 33.0 40.0 76-77 34.56702637645783 35.0 33.0 37.0 30.0 37.0 78-79 35.8356700469687 37.0 37.0 37.0 33.0 37.0 80-81 35.94298102435983 37.0 37.0 37.0 33.0 37.0 82-83 35.85878437754009 37.0 37.0 37.0 33.0 37.0 84-85 35.74294146115582 37.0 37.0 37.0 33.0 37.0 86-87 35.65736834912628 37.0 37.0 37.0 33.0 37.0 88-89 35.576557135205434 37.0 37.0 37.0 33.0 37.0 90-91 35.50698785706436 37.0 35.0 37.0 33.0 37.0 92-93 35.44128490260805 37.0 33.0 37.0 33.0 37.0 94-95 35.396007770017405 37.0 33.0 37.0 33.0 37.0 96-97 35.353946047325074 37.0 33.0 37.0 33.0 37.0 98-99 35.311369477838824 37.0 33.0 37.0 33.0 37.0 100 35.219640818057734 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 3.0 20 17.0 21 86.0 22 301.0 23 949.0 24 2382.0 25 5004.0 26 9124.0 27 15080.0 28 22733.0 29 32496.0 30 44247.0 31 60680.0 32 81789.0 33 111931.0 34 160542.0 35 254528.0 36 515957.0 37 1669917.0 38 2876673.0 39 132926.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.573350700957725 20.242253015740577 14.645979585037832 23.53841669826387 2 14.560358664120216 20.71744495833671 42.00719115691789 22.715005220625187 3 18.122043057189156 25.975076225637896 30.52291971455279 25.379961002620167 4 12.435740305864886 18.076267595169387 39.028350897580246 30.459641201385484 5 13.391072562711043 37.716432486636926 35.42360415312935 13.46889079752269 6 29.754595600802087 37.851233358110875 18.85512740092901 13.53904364015803 7 26.536849677008206 32.8748653992436 22.842627913654095 17.7456570100941 8 24.38610550031464 36.6906405245236 21.018443763478835 17.90481021168293 9 25.46859738091689 17.3516006860345 21.34206916836491 35.83773276468369 10-11 24.190719725959696 26.905052984927046 28.69072856317257 20.21349872594069 12-13 25.067287872709453 24.36943985076115 28.874442546944774 21.688829729584622 14-15 22.184597371579457 25.81826755278901 26.67578566990909 25.321349405722444 16-17 21.637440503047507 29.04582611766566 27.28474466957661 22.03198870971023 18-19 21.653139061381278 28.130232505403207 29.070461932788493 21.14616650042702 20-21 22.5550159756342 27.16785737748818 29.03320150642177 21.243925140455854 22-23 22.283418946028775 27.17500283272703 28.84947593090831 21.692102290335885 24-25 22.100930699817077 27.29949105819964 28.921789957969313 21.677788284013978 26-27 21.97732102465083 27.496490393053445 28.87304248808912 21.653146094206605 28-29 21.932460160315134 27.532806634121403 28.873279377082195 21.661453828481267 30-31 22.140027257244192 27.409741626373428 28.858826754638066 21.591404361744313 32-33 22.004573208387793 27.54006121001698 28.74650932163629 21.708856259958935 34-35 22.140463225195752 27.486069192955327 28.76441079260167 21.609056789247248 36-37 22.120455800563875 27.52243639563543 28.617581035353567 21.739526768447128 38-39 21.924391966789383 27.523860667371213 28.780276745547162 21.77147062029224 40-41 22.16262258616363 27.47346724382535 28.597006564336684 21.766903605674337 42-43 22.09135454221986 27.48970921733464 28.52591236651562 21.893023873929874 44-45 22.17801872366755 27.66288584024262 28.28572626044711 21.873369175642726 46-47 22.249155512572365 27.597077356225665 27.91143989957282 22.242327231629154 48-49 22.166279315481923 27.684217027159274 27.957403862039985 22.19209979531881 50-51 22.12481999009447 27.79852119235937 27.88805400979878 22.18860480774738 52-53 22.233790086914336 27.83027362270613 27.779249429203105 22.15668686117643 54-55 22.299575505973614 27.760393468398686 27.678927369929813 22.261103655697887 56-57 22.36730656039062 27.858119882396604 27.59038803901556 22.18418551819721 58-59 22.212165828671086 27.98003024347698 27.753076279003658 22.054727648848278 60-61 22.35714396894972 27.972669918923227 27.601340899602274 22.068845212524778 62-63 22.279650918947357 28.076318791755934 27.51409324359043 22.12993704570628 64-65 22.248288446265573 27.957890132098484 27.56949351043093 22.22432791120501 66-67 22.334257975558906 27.98113019274992 27.4151663751253 22.26944545656588 68-69 22.308527617450906 27.88237338798204 27.50885109893276 22.3002478956343 70-71 22.312744789772267 27.65204765122162 27.571735521818002 22.46347203718812 72-73 22.3791173558308 27.712318186556097 27.511786563555546 22.39677789405756 74-75 22.265699913577063 27.93390384818727 27.443755759120002 22.356640479115665 76-77 22.365312474426794 27.833066416604368 27.37042612718783 22.431194981781005 78-79 22.33991671199259 27.85673497368304 27.2837035897933 22.51964472453107 80-81 22.32862403854751 27.82919150595136 27.392122795274354 22.450061660226776 82-83 22.395479270125566 27.7907696274595 27.471346362554357 22.342404739860577 84-85 22.5519355776033 27.802909193210716 27.340399426252148 22.304755802933833 86-87 22.31573500445623 27.80033016950263 27.422312417968136 22.461622408073005 88-89 22.437249357584854 27.78511464639527 27.412302375679687 22.365333620340184 90-91 22.45228765032727 27.912960328144194 27.384865966365474 22.249886055163064 92-93 22.505392980814868 27.834581129450385 27.388053883545883 22.271972006188864 94-95 22.30879952378448 27.94774640656249 27.41687236350684 22.326581706146182 96-97 22.369602652097463 27.99779595042301 27.587946002550723 22.04465539492881 98-99 23.52978374045705 29.875468273605655 27.70456866091944 18.890179325017854 100 22.5003138565543 30.811810609701993 21.548015551279658 25.139859982464046 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1553.0 1 1321.0 2 1493.0 3 2054.0 4 2834.0 5 4512.5 6 5868.0 7 6769.5 8 7462.5 9 7509.5 10 7110.0 11 6818.5 12 7690.0 13 10312.0 14 16063.0 15 23614.5 16 29945.5 17 34049.5 18 35066.0 19 33177.0 20 30099.5 21 27001.5 22 25427.0 23 27082.5 24 31952.0 25 39707.0 26 50168.0 27 62371.5 28 74620.5 29 88315.0 30 100913.0 31 112468.5 32 126370.0 33 140606.0 34 154494.5 35 167341.5 36 181501.5 37 194103.5 38 200951.5 39 206444.5 40 215147.5 41 222352.0 42 226112.0 43 230913.5 44 236806.0 45 243060.0 46 248000.5 47 251291.5 48 250934.5 49 247027.5 50 241829.5 51 234006.5 52 223040.5 53 210350.5 54 197965.5 55 183953.5 56 168547.0 57 152789.0 58 136941.5 59 121069.5 60 101599.0 61 81418.0 62 64089.5 63 49068.5 64 36543.5 65 27151.0 66 20661.5 67 16034.0 68 12131.5 69 8828.5 70 6484.5 71 4767.0 72 3400.5 73 2352.5 74 1659.5 75 1107.5 76 689.0 77 443.5 78 278.0 79 165.5 80 101.0 81 68.5 82 48.5 83 31.0 84 21.0 85 15.5 86 11.5 87 9.5 88 9.0 89 7.5 90 4.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 6.669594618704277E-4 4 0.019825370004098467 5 9.504172331653595E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 8.337142712791186E-6 22-23 0.0 24-25 0.007772046217990552 26-27 0.05091667108072386 28-29 0.0852927222023549 30-31 0.07498851487735878 32-33 0.03523245383619395 34-35 0.004364268358525653 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.697247943977801E-4 56-57 7.973539446911813E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 6.739205549716515E-5 72-73 0.014394472056512581 74-75 0.029458806360907704 76-77 0.003538119282058276 78-79 0.0 80-81 0.0 82-83 0.01113221091503622 84-85 0.05035724705643059 86-87 0.04104183894792805 88-89 0.01037430513877753 90-91 8.467793066613376E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 63.0 20-21 290.0 22-23 697.0 24-25 1736.0 26-27 2458.0 28-29 4673.0 30-31 11010.0 32-33 14508.0 34-35 20348.0 36-37 29234.0 38-39 34040.0 40-41 36600.0 42-43 43128.0 44-45 51885.0 46-47 51417.0 48-49 45464.0 50-51 40166.0 52-53 38326.0 54-55 41732.0 56-57 44796.0 58-59 45013.0 60-61 43850.0 62-63 44444.0 64-65 47275.0 66-67 50097.0 68-69 48859.0 70-71 46470.0 72-73 44169.0 74-75 44662.0 76-77 44521.0 78-79 47487.0 80-81 48193.0 82-83 46099.0 84-85 46201.0 86-87 48445.0 88-89 51557.0 90-91 54615.0 92-93 56216.0 94-95 66421.0 96-97 191360.0 98-99 370199.0 100-101 3998642.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.22112409557619 #Duplication Level Percentage of deduplicated Percentage of total 1 89.49210482150902 76.2661777056813 2 7.452929952571835 12.70294136727522 3 1.7516729346067283 4.478386096049464 4 0.6318601589877924 2.153913320805966 5 0.2844578089552401 1.2120907118465107 6 0.1368123588605613 0.6995581807358638 7 0.08057088972519001 0.4806439254232982 8 0.04803220283464113 0.32746866546838704 9 0.03021451458943559 0.23174234075824984 >10 0.08904587523939211 1.129248959621069 >50 0.0013378187062254938 0.07579647381542061 >100 8.691805836259269E-4 0.1671360919870767 >500 6.098855666390614E-5 0.03599277897642542 >1k 3.049427369713001E-5 0.038903381555725286 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.336993273380348E-5 0.0 0.0 0.0 3 0.0 8.336993273380348E-5 0.0 0.0 0.0 4 0.0 1.3339189237408555E-4 0.0 1.6673986546760694E-5 0.0 5 1.6673986546760694E-5 1.3339189237408555E-4 0.0 1.6673986546760694E-5 0.0 6 1.6673986546760694E-5 1.3339189237408555E-4 0.0 1.6673986546760694E-5 0.0 7 1.6673986546760694E-5 1.3339189237408555E-4 0.0 1.6673986546760694E-5 0.0 8 1.6673986546760694E-5 1.6673986546760695E-4 0.0 3.334797309352139E-5 0.0 9 1.6673986546760694E-5 3.168057443884532E-4 0.0 5.002195964028208E-5 0.0 10-11 1.6673986546760694E-5 3.168057443884532E-4 0.0 6.669594618704278E-5 0.0 12-13 1.6673986546760694E-5 3.168057443884532E-4 0.0 8.336993273380346E-5 0.0 14-15 1.6673986546760694E-5 4.5019763676253875E-4 0.0 1.0004391928056416E-4 0.0 16-17 1.6673986546760694E-5 4.5019763676253875E-4 0.0 1.1671790582732487E-4 0.0 18-19 1.6673986546760694E-5 4.6687162330929946E-4 0.0 1.3339189237408555E-4 0.0 20-21 1.6673986546760694E-5 5.002195964028209E-4 0.0 1.3339189237408555E-4 0.0 22-23 1.6673986546760694E-5 5.585785493164833E-4 0.0 1.4172888564746588E-4 0.0 24-25 1.6673986546760694E-5 5.919265224100046E-4 0.0 2.0008783856112836E-4 0.0 26-27 1.6673986546760694E-5 6.00263515683385E-4 0.0 2.9179476456831215E-4 0.0 28-29 1.6673986546760694E-5 6.00263515683385E-4 0.0 5.919265224100047E-4 0.0 30-31 1.6673986546760694E-5 6.836334484171885E-4 0.0 0.0018674864932371978 0.0 32-33 1.6673986546760694E-5 6.919704416905688E-4 0.0 0.004643705253272854 0.0 34-35 2.501097982014104E-5 8.17025340791274E-4 0.0 0.008228612360826403 0.0 36-37 4.168496636690173E-5 9.337432466185989E-4 0.0 0.013756038901077572 0.0 38-39 6.669594618704278E-5 9.670912197121202E-4 0.0 0.02613647391204739 0.0 40-41 6.669594618704278E-5 0.001033787165899163 0.0 0.03887539963377255 0.0 42-43 6.669594618704278E-5 0.001075472132266065 0.0 0.04812112517395137 0.0 44-45 8.336993273380348E-5 0.0012088640246401502 0.0 0.06000134058851836 0.0 46-47 8.336993273380348E-5 0.0013172449371940949 0.0 0.07203162188200621 0.0 48-49 8.336993273380348E-5 0.0013255819304674754 0.0 0.08381179337729264 0.0 50-51 8.336993273380348E-5 0.001508995782481843 0.0 0.09576704173132006 0.0 52-53 8.336993273380348E-5 0.001534006762301984 0.0 0.11998600719048996 0.0 54-55 8.336993273380348E-5 0.0015423437555753643 0.0 0.14917382064059456 0.0 56-57 8.336993273380348E-5 0.0015673547353955053 0.0 0.1789785715929293 0.0 58-59 8.336993273380348E-5 0.0015756917286688858 0.0 0.2024388706642216 0.0 60-61 8.336993273380348E-5 0.0016423876748559284 0.0 0.21956305484774483 0.0 62-63 8.336993273380348E-5 0.0016507246681293087 0.0 0.23199351181835492 0.0 64-65 8.336993273380348E-5 0.00191750845287748 0.0 0.2374875903855126 0.0 66-67 1.0004391928056416E-4 0.0019508564259710013 0.0 0.24355692148853347 0.0 68-69 1.0004391928056416E-4 0.001992541392337903 0.0 0.2493177838404393 0.0 70-71 1.0004391928056416E-4 0.002025889365431424 0.0 0.25454507862284875 0.0 72-73 1.0004391928056416E-4 0.0020342263587048047 0.0 0.25878860819899935 0.0 74-75 1.0004391928056416E-4 0.0020592373385249457 0.0 0.2617148928379559 0.0 76-77 1.0004391928056416E-4 0.002200966224172412 0.0 0.26480791734237996 0.0 78-79 1.0004391928056416E-4 0.002284336156906215 0.0 0.2667254257952575 0.0 80-81 1.0004391928056416E-4 0.002301010143452976 0.0 0.2673423632974876 0.0 82-83 1.0004391928056416E-4 0.0023260211232731167 0.0 0.26782590890734365 0.0 84-85 1.0838091255394451E-4 0.0023426951098198777 0.0 0.26798431177953785 0.0 86-87 1.584028721942266E-4 0.002467750008920583 0.0 0.2680343337391782 0.0 88 1.8341385201436764E-4 0.0026344898743881897 0.0 0.2680343337391782 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8940 0.0 49.34292 1 GTATCAA 15750 0.0 34.479725 1 ATCAACG 18090 0.0 28.954296 3 TCAACGC 18220 0.0 28.747465 4 CAACGCA 18590 0.0 28.26321 5 TATCAAC 19080 0.0 27.811094 2 AACGCAG 19115 0.0 27.531296 6 ACGCAGA 21920 0.0 23.969173 7 CGCAGAG 22250 0.0 23.613678 8 GTGGTAT 4310 0.0 22.059761 1 TGGTATC 4330 0.0 20.869867 2 GCAGAGT 25630 0.0 20.449463 9 GAGTACT 14340 0.0 20.126108 12-13 TACATGG 18190 0.0 20.036505 2 GTACATG 18730 0.0 19.961887 1 ACATGGG 18570 0.0 19.188301 3 CAGAGTA 25460 0.0 18.862097 10-11 AGAGTAC 22990 0.0 18.187891 10-11 GTACTTT 16055 0.0 17.790276 14-15 CATGGGG 13865 0.0 16.896196 4 >>END_MODULE