##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138662_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6480905 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.83966421356276 33.0 33.0 33.0 33.0 33.0 2 32.8356099958262 33.0 33.0 33.0 33.0 33.0 3 32.83415464352586 33.0 33.0 33.0 33.0 33.0 4 36.79061118778936 37.0 37.0 37.0 37.0 37.0 5 36.80115477699488 37.0 37.0 37.0 37.0 37.0 6 36.812345035145555 37.0 37.0 37.0 37.0 37.0 7 36.80165300988057 37.0 37.0 37.0 37.0 37.0 8 36.79721489514196 37.0 37.0 37.0 37.0 37.0 9 36.79184018281398 37.0 37.0 37.0 37.0 37.0 10-11 36.76995435051123 37.0 37.0 37.0 37.0 37.0 12-13 36.75665489619119 37.0 37.0 37.0 37.0 37.0 14-15 39.117651161373296 40.0 40.0 40.0 37.0 40.0 16-17 39.0780742812925 40.0 40.0 40.0 37.0 40.0 18-19 39.10317910847328 40.0 40.0 40.0 37.0 40.0 20-21 39.14183951658513 40.0 40.0 40.0 37.0 40.0 22-23 39.16331052935708 40.0 40.0 40.0 37.0 40.0 24-25 39.08563361492283 40.0 40.0 40.0 37.0 40.0 26-27 39.00841203246195 40.0 40.0 40.0 37.0 40.0 28-29 38.975674940740305 40.0 40.0 40.0 37.0 40.0 30-31 38.92767513743972 40.0 40.0 40.0 37.0 40.0 32-33 38.78724428078157 40.0 40.0 40.0 37.0 40.0 34-35 38.85942934965561 40.0 40.0 40.0 37.0 40.0 36-37 38.587367011784025 40.0 37.0 40.0 37.0 40.0 38-39 38.74263525120989 40.0 37.0 40.0 37.0 40.0 40-41 38.74652293396464 40.0 37.0 40.0 37.0 40.0 42-43 38.69291564968602 40.0 37.0 40.0 37.0 40.0 44-45 38.60853575285134 40.0 37.0 40.0 37.0 40.0 46-47 38.53234996784331 40.0 37.0 40.0 37.0 40.0 48-49 38.48128088642133 40.0 37.0 40.0 37.0 40.0 50-51 38.419166280341145 40.0 37.0 40.0 37.0 40.0 52-53 38.35987144371158 40.0 37.0 40.0 37.0 40.0 54-55 38.27807084239846 40.0 37.0 40.0 37.0 40.0 56-57 38.15885289585857 40.0 37.0 40.0 37.0 40.0 58-59 38.026710177632566 40.0 37.0 40.0 37.0 40.0 60-61 37.86955300438346 40.0 37.0 40.0 35.0 40.0 62-63 37.67810378178507 38.5 37.0 40.0 33.0 40.0 64-65 37.45446608776675 37.0 37.0 40.0 33.0 40.0 66-67 37.21414701493458 37.0 37.0 40.0 33.0 40.0 68-69 36.95607323238474 37.0 37.0 40.0 33.0 40.0 70-71 36.702207728975175 37.0 37.0 40.0 33.0 40.0 72-73 36.45124222657228 37.0 37.0 37.0 33.0 40.0 74-75 36.20620951136631 37.0 37.0 37.0 33.0 40.0 76-77 34.5314740454364 35.0 33.0 37.0 30.0 37.0 78-79 35.813451670975944 37.0 37.0 37.0 33.0 37.0 80-81 35.92787624636246 37.0 37.0 37.0 33.0 37.0 82-83 35.84735866776279 37.0 37.0 37.0 33.0 37.0 84-85 35.733954934204675 37.0 37.0 37.0 33.0 37.0 86-87 35.649466499057915 37.0 37.0 37.0 33.0 37.0 88-89 35.57254124620633 37.0 37.0 37.0 33.0 37.0 90-91 35.50787473670277 37.0 35.0 37.0 33.0 37.0 92-93 35.44551384650801 37.0 33.0 37.0 33.0 37.0 94-95 35.39810774636588 37.0 33.0 37.0 33.0 37.0 96-97 35.355161071314 37.0 33.0 37.0 33.0 37.0 98-99 35.31094992688362 37.0 33.0 37.0 33.0 37.0 100 35.21501654501656 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 4.0 20 22.0 21 82.0 22 358.0 23 1032.0 24 2547.0 25 5322.0 26 9769.0 27 15977.0 28 24462.0 29 35462.0 30 48257.0 31 65623.0 32 88348.0 33 121075.0 34 174448.0 35 273063.0 36 557174.0 37 1817732.0 38 3088600.0 39 151548.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.13403837889924 20.01735868678834 14.449062283739694 23.39954065057272 2 14.795942850574109 20.751793152345236 41.751468352028 22.70079564505266 3 18.31772349579507 26.02513960748044 30.38419811972166 25.272938777002828 4 12.56396137347269 17.961702500674413 38.676606851066374 30.797729274786516 5 13.46669832912633 37.66666188335161 35.20644864933841 13.660191138183645 6 29.913877768614107 37.57353332597839 18.754896114045803 13.7576927913617 7 26.651185289708767 32.86707643454116 22.692633204776186 17.789105070973886 8 24.67751031684618 36.339554429512546 20.935548353200673 18.0473869004406 9 25.759025938507047 17.09466501977733 21.128978128826144 36.01733091288948 10-11 24.306157859126156 26.84319551050355 28.47883898930782 20.371807641062475 12-13 25.266347832594366 24.401314322613892 28.67619568563341 21.65614215915833 14-15 22.427870798908486 25.725589250266744 26.582252015729285 25.264287935095485 16-17 21.726826731760458 28.928938165271674 27.21623754707097 22.1279975558969 18-19 21.78677977844144 27.922489220255503 29.103790288547664 21.186940712755394 20-21 22.743890005478494 27.00851307528528 29.006307944757708 21.24128897447852 22-23 22.440796372513187 26.934524739524562 28.880250545895287 21.744428342066964 24-25 22.171126070114823 27.11219180754788 28.932583229095023 21.78409889324227 26-27 22.06556108655402 27.34461434589093 28.861679016094815 21.72814555146023 28-29 21.97925990332234 27.37941362471187 28.919804603927012 21.721521868038778 30-31 22.297984107029333 27.197796946540663 28.83118913269667 21.673029813733333 32-33 22.09029463256946 27.38002666031144 28.724384571503798 21.805294135615302 34-35 22.16790871122159 27.32375460446797 28.7843504951297 21.72398618918074 36-37 22.191265985447316 27.364623773609235 28.64988394728785 21.79422629365559 38-39 21.989711100890535 27.375492214156203 28.79075757758953 21.84403910736373 40-41 22.26237575919067 27.30541134762029 28.60690590788809 21.825306985300948 42-43 22.19717214040755 27.321170443319332 28.476748721513346 22.004908694759777 44-45 22.24713830973705 27.523626994447838 28.250676287113297 21.978558408701822 46-47 22.388840747518863 27.41672200851491 27.892940369983098 22.301496873983123 48-49 22.320772409238256 27.59245710637122 27.851871738735706 22.23489874565482 50-51 22.20907163559462 27.726083286228604 27.778569052779385 22.286276025397395 52-53 22.367167804104266 27.70336617537499 27.63191227795741 22.297553742563338 54-55 22.436978046627303 27.585872224371542 27.60355518004906 22.37359454895209 56-57 22.461243106722996 27.7352122216615 27.51595200348908 22.287592668126425 58-59 22.32030945992996 27.87748069715526 27.625570893153377 22.1766389497614 60-61 22.46333675086279 27.82933728053968 27.512736525009668 22.194589443587862 62-63 22.397093053404884 27.908742459649073 27.41055617425176 22.283608312694284 64-65 22.36589179873272 27.890039264178583 27.429942711655325 22.314126225433377 66-67 22.477494581086333 27.901541724086353 27.26844267192051 22.352521022906803 68-69 22.440388518141503 27.83180917172356 27.34144916007774 22.386353150057193 70-71 22.43326603696146 27.55935460515287 27.43308358527322 22.574295772612448 72-73 22.506105106617376 27.596048767152926 27.351917472768168 22.545928653461534 74-75 22.358814131903017 27.812574477748676 27.299845252044676 22.528766138303638 76-77 22.49232888384272 27.752526804170575 27.19478885594978 22.56035545603692 78-79 22.475053160777907 27.752141686968685 27.159501110156643 22.613304042096765 80-81 22.493817596249546 27.745514264899935 27.175652557020562 22.58501558182996 82-83 22.504795676287678 27.685315038009676 27.307020893097505 22.502868392605137 84-85 22.627798132649673 27.679705478797562 27.213749801571495 22.47874658698127 86-87 22.442640928653844 27.79041265942351 27.255034234626635 22.51191217729601 88-89 22.521397159109018 27.724968872629912 27.241789333285286 22.51184463497578 90-91 22.53777438575146 27.778151194508926 27.27581164129943 22.40826277844019 92-93 22.64795739377984 27.73993661725347 27.24066589308627 22.371440095880427 94-95 22.452498672845834 27.81423233446032 27.2341901635907 22.49907882910314 96-97 22.49305207478844 27.891915533663887 27.405372336349508 22.209660055198164 98-99 23.680110788067392 29.778044221165896 27.519388761742757 19.022456229023955 100 22.543042467681023 30.842709951579156 21.407226962080237 25.207020618659588 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2448.0 1 2042.0 2 2140.5 3 2776.0 4 3608.0 5 5559.5 6 7263.5 7 8601.5 8 9669.0 9 9898.0 10 9340.0 11 8809.5 12 9879.0 13 12927.0 14 19791.5 15 29044.0 16 36640.0 17 41203.5 18 41947.0 19 39565.0 20 35578.5 21 31365.5 22 29068.0 23 30249.5 24 34783.0 25 42842.0 26 54639.5 27 68115.5 28 80710.5 29 94722.0 30 107411.5 31 118912.5 32 132824.0 33 146330.0 34 161147.5 35 175340.5 36 190101.5 37 203368.0 38 209988.0 39 216029.0 40 225852.5 41 234317.0 42 238929.5 43 244508.0 44 251171.5 45 259203.0 46 265873.5 47 268951.5 48 269151.5 49 266738.0 50 263262.0 51 257117.0 52 248680.5 53 238185.0 54 225817.5 55 211850.0 56 196929.0 57 178900.5 58 159414.0 59 139974.5 60 117782.5 61 95971.0 62 75969.0 63 58429.0 64 43491.0 65 32027.0 66 24195.5 67 18450.5 68 13853.5 69 9978.0 70 7131.0 71 5065.0 72 3550.5 73 2430.5 74 1631.0 75 1077.0 76 718.0 77 479.0 78 320.0 79 212.5 80 133.5 81 82.5 82 63.0 83 45.5 84 31.0 85 22.5 86 18.5 87 16.5 88 12.0 89 7.0 90 3.5 91 1.0 92 0.0 93 0.0 94 0.5 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 8.640768534641382E-4 4 0.018716521843785708 5 6.789175277218229E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.007724666047098546 26-27 0.05090151806791609 28-29 0.08461965219592864 30-31 0.07502455000929108 32-33 0.035402229937483445 34-35 0.004275179466204202 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 3.10373495915359E-4 56-57 7.443677162984556E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 3.612903412278886E-5 72-73 0.013944505791757912 74-75 0.029211606094242552 76-77 0.0035787500699482966 78-79 0.0 80-81 0.0 82-83 0.010948840726772926 84-85 0.05074673446846258 86-87 0.04147307832431144 88-89 0.01017512498676145 90-91 1.6027398838314096E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 62.0 20-21 285.0 22-23 719.0 24-25 2077.0 26-27 2886.0 28-29 5794.0 30-31 13597.0 32-33 17545.0 34-35 24456.0 36-37 35180.0 38-39 40393.0 40-41 43447.0 42-43 51807.0 44-45 62024.0 46-47 61666.0 48-49 54426.0 50-51 47511.0 52-53 44794.0 54-55 48218.0 56-57 51724.0 58-59 51830.0 60-61 51524.0 62-63 51368.0 64-65 53732.0 66-67 57937.0 68-69 56537.0 70-71 54013.0 72-73 51387.0 74-75 52309.0 76-77 52156.0 78-79 55052.0 80-81 55770.0 82-83 53579.0 84-85 53281.0 86-87 55528.0 88-89 59445.0 90-91 61530.0 92-93 63211.0 94-95 74791.0 96-97 206429.0 98-99 392367.0 100-101 4208518.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.69976837908466 #Duplication Level Percentage of deduplicated Percentage of total 1 89.88184053333083 77.02852915192277 2 7.210305465730245 12.358430167110601 3 1.6745103235551217 4.305154406311802 4 0.5987457549298352 2.0524949006178823 5 0.2638038735663698 1.1303965431071612 6 0.13309559864606937 0.6843757185746255 7 0.06844062259868743 0.4105741853099501 8 0.04536305914648476 0.3110082929456369 9 0.03133673931428735 0.2416996170891164 >10 0.09025323345178869 1.1693420236989096 >50 0.0014547146328598916 0.08405010558410028 >100 6.576181738009623E-4 0.09477313821032181 >500 1.6496825496228727E-4 0.08935050368468096 >1k 2.749466865798886E-5 0.039821245832473574 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.542994381185961E-5 0.0 0.0 0.0 3 0.0 1.542994381185961E-5 0.0 0.0 0.0 4 0.0 7.714971905929804E-5 0.0 0.0 0.0 5 0.0 7.714971905929804E-5 0.0 0.0 0.0 6 0.0 7.714971905929804E-5 0.0 0.0 0.0 7 0.0 7.714971905929804E-5 0.0 0.0 0.0 8 0.0 9.257966287115766E-5 0.0 0.0 0.0 9 0.0 2.7773898861347296E-4 0.0 0.0 0.0 10-11 1.542994381185961E-5 2.7773898861347296E-4 0.0 7.714971905929805E-6 0.0 12-13 3.085988762371922E-5 2.7773898861347296E-4 0.0 1.542994381185961E-5 0.0 14-15 3.085988762371922E-5 3.240288200490518E-4 0.0 3.857485952964902E-5 0.0 16-17 3.085988762371922E-5 3.240288200490518E-4 0.0 4.628983143557883E-5 0.0 18-19 3.085988762371922E-5 3.780336233905604E-4 0.0 4.628983143557883E-5 0.0 20-21 3.085988762371922E-5 4.397533986379989E-4 0.0 4.628983143557883E-5 0.0 22-23 3.085988762371922E-5 5.400480334150863E-4 0.0 5.400480334150864E-5 0.0 24-25 3.085988762371922E-5 5.786228929447353E-4 0.0 8.486469096522786E-5 0.0 26-27 3.085988762371922E-5 6.017678086625248E-4 0.0 1.465844662126663E-4 0.0 28-29 3.085988762371922E-5 6.017678086625248E-4 0.0 5.014731738854373E-4 0.0 30-31 4.628983143557883E-5 6.171977524743843E-4 0.0 0.0016278590721511888 0.0 32-33 4.628983143557883E-5 6.171977524743843E-4 0.0 0.004389819014474059 0.0 34-35 6.171977524743844E-5 7.252073591574016E-4 0.0 0.008147010332661873 0.0 36-37 7.714971905929804E-5 8.409319377463487E-4 0.0 0.014334417801217577 0.0 38-39 7.714971905929804E-5 9.103666848997169E-4 0.0 0.029316893242533254 0.0 40-41 7.714971905929804E-5 0.0010029463477708746 0.0 0.04449995795340311 0.0 42-43 7.714971905929804E-5 0.0010646661230183131 0.0 0.0539970883696027 0.0 44-45 7.714971905929804E-5 0.0012498254487606285 0.0 0.06626389370003109 0.0 46-47 7.714971905929804E-5 0.0013809799711614352 0.0 0.0788470128786026 0.0 48-49 7.714971905929804E-5 0.0013886949430673649 0.0 0.09074349955754636 0.0 50-51 7.714971905929804E-5 0.0016664339316808377 0.0 0.10243939696693595 0.0 52-53 9.257966287115766E-5 0.0016818638754926975 0.0 0.1334921588883034 0.0 54-55 9.257966287115766E-5 0.0016818638754926975 0.0 0.17173527462599744 0.0 56-57 9.257966287115766E-5 0.001697293819304557 0.0 0.21004011013893892 0.0 58-59 9.257966287115766E-5 0.0017127237631164166 0.0 0.23465858549076093 0.0 60-61 9.257966287115766E-5 0.0017590135945519953 0.0 0.2509063163246491 0.0 62-63 9.257966287115766E-5 0.0017744435383638551 0.0 0.2616455572177034 0.0 64-65 9.257966287115766E-5 0.0019441729202943107 0.0 0.2675012208943041 0.0 66-67 9.257966287115766E-5 0.0019596028641061703 0.0 0.2729248461441728 0.0 68-69 9.257966287115766E-5 0.00197503280791803 0.0 0.27819417195592283 0.0 70-71 9.257966287115766E-5 0.0019827477798239597 0.0 0.28322433363858907 0.0 72-73 9.257966287115766E-5 0.001998177723635819 0.0 0.2872515489734844 0.0 74-75 9.257966287115766E-5 0.0020290376112595387 0.0 0.2902526730448911 0.0 76-77 9.257966287115766E-5 0.0020753274426951176 0.0 0.29300691801530804 0.0 78-79 1.0800960668301726E-4 0.0020984723584129067 0.0 0.2949048011041668 0.0 80-81 1.0800960668301726E-4 0.0020984723584129067 0.0 0.2955528587442649 0.0 82-83 1.1572457858894706E-4 0.0021139023022247664 0.0 0.29605433191815034 0.0 84-85 1.2343955049487688E-4 0.0021293322460366262 0.0 0.2963552158224816 0.0 86-87 1.2343955049487688E-4 0.0021293322460366262 0.0 0.2964555104572587 0.0 88 1.2343955049487688E-4 0.0022373418527196435 0.0 0.2964709404010705 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9595 0.0 50.722706 1 GTATCAA 17690 0.0 38.90514 1 ATCAACG 22125 0.0 30.70379 3 TCAACGC 22155 0.0 30.643063 4 TATCAAC 22570 0.0 30.286417 2 CAACGCA 22640 0.0 29.999804 5 AACGCAG 23205 0.0 29.251083 6 GTGGTAT 4675 0.0 27.13773 1 TGGTATC 4315 0.0 26.845148 2 ACGCAGA 26580 0.0 25.48904 7 CGCAGAG 26845 0.0 25.190016 8 GCAGAGT 30990 0.0 21.77971 9 TACATGG 23705 0.0 20.781467 2 GTACATG 24570 0.0 20.723352 1 GAGTACT 16745 0.0 20.521229 12-13 ACATGGG 24265 0.0 19.829725 3 AGAGTAC 28235 0.0 18.939066 10-11 CAGAGTA 30430 0.0 18.855536 10-11 GTACTTT 18900 0.0 18.181444 14-15 CATGGGG 16720 0.0 17.459673 4 >>END_MODULE