##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138660_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6434184 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.84100439154367 33.0 33.0 33.0 33.0 33.0 2 32.841534062438996 33.0 33.0 33.0 33.0 33.0 3 32.8431465435244 33.0 33.0 33.0 33.0 33.0 4 36.79632335662144 37.0 37.0 37.0 37.0 37.0 5 36.80575034845133 37.0 37.0 37.0 37.0 37.0 6 36.81482531429005 37.0 37.0 37.0 37.0 37.0 7 36.80569128890315 37.0 37.0 37.0 37.0 37.0 8 36.800572224854 37.0 37.0 37.0 37.0 37.0 9 36.79639065342241 37.0 37.0 37.0 37.0 37.0 10-11 36.77609965770329 37.0 37.0 37.0 37.0 37.0 12-13 36.763935488944675 37.0 37.0 37.0 37.0 37.0 14-15 39.14187774238349 40.0 40.0 40.0 37.0 40.0 16-17 39.099622656113034 40.0 40.0 40.0 37.0 40.0 18-19 39.11648229208242 40.0 40.0 40.0 37.0 40.0 20-21 39.1557678124551 40.0 40.0 40.0 37.0 40.0 22-23 39.17494431137807 40.0 40.0 40.0 37.0 40.0 24-25 39.095557505410085 40.0 40.0 40.0 37.0 40.0 26-27 39.01951715181599 40.0 40.0 40.0 37.0 40.0 28-29 38.99263647944803 40.0 40.0 40.0 37.0 40.0 30-31 38.95556577852754 40.0 40.0 40.0 37.0 40.0 32-33 38.81159211315241 40.0 40.0 40.0 37.0 40.0 34-35 38.884763577052645 40.0 40.0 40.0 37.0 40.0 36-37 38.59175698867635 40.0 37.0 40.0 37.0 40.0 38-39 38.7562331868515 40.0 37.0 40.0 37.0 40.0 40-41 38.770891863002205 40.0 37.0 40.0 37.0 40.0 42-43 38.72550845689592 40.0 37.0 40.0 37.0 40.0 44-45 38.64224541191969 40.0 37.0 40.0 37.0 40.0 46-47 38.56905692057131 40.0 37.0 40.0 37.0 40.0 48-49 38.514814089429336 40.0 37.0 40.0 37.0 40.0 50-51 38.440138694786796 40.0 37.0 40.0 37.0 40.0 52-53 38.392204156009555 40.0 37.0 40.0 37.0 40.0 54-55 38.314650211332975 40.0 37.0 40.0 37.0 40.0 56-57 38.181336409039375 40.0 37.0 40.0 37.0 40.0 58-59 38.06093434917587 40.0 37.0 40.0 37.0 40.0 60-61 37.90145217511988 40.0 37.0 40.0 35.0 40.0 62-63 37.726016254501644 40.0 37.0 40.0 33.0 40.0 64-65 37.52218833325371 37.0 37.0 40.0 33.0 40.0 66-67 37.29147790144894 37.0 37.0 40.0 33.0 40.0 68-69 37.04021202601112 37.0 37.0 40.0 33.0 40.0 70-71 36.79028319319695 37.0 37.0 40.0 33.0 40.0 72-73 36.54079248908539 37.0 37.0 38.5 33.0 40.0 74-75 36.280973861619316 37.0 37.0 37.0 33.0 40.0 76-77 34.60360238027035 35.0 33.0 37.0 30.0 37.0 78-79 35.852653139774205 37.0 37.0 37.0 33.0 37.0 80-81 35.94665998368045 37.0 37.0 37.0 33.0 37.0 82-83 35.86018138533777 37.0 37.0 37.0 33.0 37.0 84-85 35.75013165224887 37.0 37.0 37.0 33.0 37.0 86-87 35.665235514523985 37.0 37.0 37.0 33.0 37.0 88-89 35.59185387990415 37.0 37.0 37.0 33.0 37.0 90-91 35.53380635878697 37.0 37.0 37.0 33.0 37.0 92-93 35.477071962479314 37.0 33.0 37.0 33.0 37.0 94-95 35.41252413311304 37.0 33.0 37.0 33.0 37.0 96-97 35.35998489322411 37.0 33.0 37.0 33.0 37.0 98-99 35.321235910432904 37.0 33.0 37.0 33.0 37.0 100 35.22097535445028 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 18.0 21 76.0 22 351.0 23 1086.0 24 2618.0 25 5432.0 26 9903.0 27 16466.0 28 24538.0 29 34464.0 30 47964.0 31 63563.0 32 85863.0 33 118080.0 34 170026.0 35 266927.0 36 544034.0 37 1790260.0 38 3112121.0 39 140389.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.219881184622636 20.343076915425485 14.472200359828069 23.964841540123814 2 14.350397812683008 20.542589394397176 42.29069296122088 22.81631983169894 3 18.140509990567473 25.876969325559568 30.541430769309674 25.441089914563285 4 12.2785428786752 18.24638169594556 38.7666706876954 30.708404737683836 5 13.329088263823042 37.57307707909584 35.69484363933529 13.40299101774583 6 29.638599082649797 37.787386869881246 18.86820457730149 13.705809470167468 7 26.377377457654305 32.59841496606251 22.689233009189667 18.33497456709351 8 24.20683026783194 36.762221907237965 21.19465343235444 17.836294392575656 9 24.99863230519985 17.31276258185964 21.308684986316837 36.379920126623674 10-11 23.979792931007257 26.837505734992966 28.809193209270983 20.373508124728794 12-13 24.941033703729953 24.13687578720161 28.905747799565574 22.01634270950287 14-15 22.09268494652935 25.821906864957544 26.341055835518535 25.744352352994564 16-17 21.7587731404635 29.165065842071037 26.979769307187983 22.09639171027748 18-19 21.835418446224107 28.075914521561707 28.672190599460627 21.416476432753555 20-21 22.42489096119287 27.123679634756424 28.742097236388364 21.709332167662343 22-23 22.15199582947087 27.405818037351974 28.481261839969314 21.960924293207846 24-25 22.175950390211618 27.45407965046292 28.53567141599424 21.834298543331222 26-27 22.064580386640348 27.604616011823097 28.594712634182706 21.73609096735385 28-29 21.946959672921512 27.428292762525857 28.75296188329845 21.87178568125418 30-31 21.95983889173072 27.15829563884865 28.89820353868372 21.98366193073691 32-33 21.745591493817244 27.5540017761023 28.687822271748338 22.01258445833212 34-35 22.04071121619547 27.472238119987413 28.728062453411983 21.758988210405136 36-37 21.972288422581716 27.505042771739106 28.692014017235966 21.830654788443205 38-39 21.857963382195475 27.34239612027709 28.73894013052875 22.060700366998685 40-41 22.10689835624501 27.1978528941623 28.83976808731991 21.85548066227278 42-43 22.0666137643858 27.242556425551484 28.721635542668828 21.96919426739389 44-45 21.938975591411513 27.525485316081657 28.483848925127376 22.051690167379455 46-47 22.265737157965606 27.23960071596721 28.056950859167962 22.437711266899218 48-49 22.123921293509383 27.458455022257443 28.07736895398817 22.340254730245007 50-51 21.899943877824203 27.667819517957444 28.026647787404702 22.405588816813648 52-53 21.917688331514185 27.667338798235384 28.113771735500066 22.30120113475036 54-55 22.090480589426086 27.432897339299306 28.076223011819895 22.400399059454713 56-57 22.24222234363668 27.317903884156635 27.896244193415892 22.543629578790792 58-59 21.714302098396132 27.418643276824938 28.345713636303397 22.52134098847553 60-61 22.119985781887397 27.89167081893691 28.06008034695421 21.92826305222149 62-63 21.51122867670573 28.26918855727687 28.022000446131567 22.197582319885836 64-65 21.376211732533665 28.42305517169525 27.809583754412486 22.3911493413586 66-67 21.532707633551222 28.718207419408355 27.442209190859256 22.306875756181164 68-69 21.64105407429367 28.512468686028527 27.33029162211641 22.516185617561398 70-71 21.665071225243114 27.9805615522011 27.3088258506406 23.045541371915185 72-73 21.919449726129713 27.437228765579825 27.358372253974046 23.284949254316416 74-75 22.000846437120853 27.555741482805583 27.52544442243415 22.91796765763942 76-77 22.289455269993002 27.45919474218631 26.87465161236761 23.376698375453074 78-79 22.488814217216273 27.46301610614554 26.470681159480364 23.57748851715783 80-81 22.320642767907344 27.81286092215754 26.69625330874872 23.1702430011864 82-83 22.296421737763307 27.617326025558413 26.770831130143534 23.315421106534743 84-85 22.43764242864856 28.00106748773315 26.667011732392982 22.89427835122531 86-87 22.789061813572076 27.896833755573436 26.741351943359586 22.572752487494903 88-89 22.59031117601712 27.99041193367673 27.039252261086784 22.38002462921937 90-91 22.532818696333976 27.665238513701368 26.910929056246562 22.891013733718097 92-93 22.565330469401452 27.21917016621203 27.173548080598092 23.04195128378842 94-95 21.836621538083655 27.67977322175993 27.75749055718797 22.726114682968447 96-97 21.952907517622986 27.607882127124846 27.912568104788164 22.526642250464004 98-99 23.156361928640546 29.38100349268828 28.26780578271662 19.194828795954557 100 22.141466321807723 30.437306587641043 21.931694043455504 25.489533047095726 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1208.0 1 1077.5 2 1346.0 3 1877.5 4 2635.0 5 4329.5 6 5687.0 7 6570.5 8 7141.0 9 7041.5 10 6618.5 11 6309.0 12 7146.0 13 9707.5 14 15261.5 15 22608.0 16 28791.0 17 32654.0 18 33393.0 19 31686.0 20 28895.5 21 25762.5 22 24182.0 23 25875.0 24 30540.5 25 37568.0 26 47747.0 27 60283.5 28 73423.5 29 88056.5 30 101427.5 31 114144.5 32 128363.5 33 141837.0 34 156383.0 35 171101.5 36 185769.5 37 199983.5 38 210949.5 39 219898.5 40 229554.0 41 238350.5 42 245434.0 43 252539.5 44 259459.5 45 266373.5 46 274659.0 47 283237.5 48 294978.0 49 294923.5 50 281004.5 51 269435.5 52 255100.5 53 236153.0 54 217813.0 55 198371.5 56 178751.0 57 160259.0 58 140570.5 59 120648.5 60 98071.0 61 77070.0 62 60318.0 63 46136.0 64 34490.5 65 25443.0 66 18959.5 67 14620.5 68 11067.0 69 7962.0 70 5703.5 71 3987.5 72 2730.0 73 1826.5 74 1223.5 75 817.0 76 528.5 77 318.0 78 207.0 79 141.5 80 91.0 81 55.5 82 41.5 83 31.5 84 23.5 85 18.5 86 15.0 87 12.0 88 7.0 89 2.5 90 1.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.001010229113746203 4 0.020764093784075805 5 8.237252773622887E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 7.771139325182238E-6 22-23 0.0 24-25 0.007220869291617177 26-27 0.05059080921970266 28-29 0.08566507421778406 30-31 0.07598579459664531 32-33 0.03535498953239496 34-35 0.004006232821907458 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.489965439279703E-4 56-57 6.48648378940383E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 7.098075259294908E-5 72-73 0.012978331918017427 74-75 0.02882407534282482 76-77 0.003950137766756316 78-79 0.0 80-81 0.0 82-83 0.010076080991012643 84-85 0.0492852733571805 86-87 0.03998267225772083 88-89 0.010117386884416608 90-91 8.823013006003472E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 70.0 20-21 279.0 22-23 626.0 24-25 1707.0 26-27 2494.0 28-29 5209.0 30-31 12219.0 32-33 16484.0 34-35 23306.0 36-37 33165.0 38-39 23640.0 40-41 40723.0 42-43 47427.0 44-45 56514.0 46-47 56345.0 48-49 51268.0 50-51 27573.0 52-53 8507.0 54-55 10588.0 56-57 13293.0 58-59 36395.0 60-61 58934.0 62-63 60915.0 64-65 64892.0 66-67 72225.0 68-69 60064.0 70-71 54279.0 72-73 50638.0 74-75 50965.0 76-77 51694.0 78-79 54387.0 80-81 54582.0 82-83 52618.0 84-85 52020.0 86-87 54404.0 88-89 58307.0 90-91 60842.0 92-93 62403.0 94-95 73298.0 96-97 217738.0 98-99 430802.0 100-101 4270345.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.26390995013533 #Duplication Level Percentage of deduplicated Percentage of total 1 88.50303360999565 74.57611654426475 2 8.101479154855639 13.653246199353083 3 2.0092677340247365 5.079262662167185 4 0.6771475597964607 2.2823640400657137 5 0.29599762000595053 1.2470958398817895 6 0.1676123701344606 0.8474204198123364 7 0.0830848309246324 0.49007368978788113 8 0.04718159433605167 0.3180564493149499 9 0.028053655056480165 0.21275195971062624 >10 0.08499454355812136 1.0406241292604559 >50 0.001295542018236607 0.07236474241141516 >100 7.946306341171924E-4 0.1440934123847081 >500 2.857737346797723E-5 0.012425492718507822 >1k 2.8577285984348583E-5 0.024104418866572178 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.55419863653262E-5 0.0 0.0 0.0 3 0.0 1.55419863653262E-5 0.0 0.0 0.0 4 0.0 1.243358909226096E-4 0.0 0.0 0.0 5 0.0 1.243358909226096E-4 0.0 0.0 1.55419863653262E-5 6 0.0 1.243358909226096E-4 0.0 0.0 1.55419863653262E-5 7 0.0 1.243358909226096E-4 0.0 0.0 1.55419863653262E-5 8 0.0 1.3987787728793582E-4 0.0 0.0 1.55419863653262E-5 9 0.0 2.952977409411978E-4 0.0 0.0 3.10839727306524E-5 10-11 0.0 2.952977409411978E-4 0.0 0.0 3.10839727306524E-5 12-13 0.0 2.952977409411978E-4 0.0 2.33129795479893E-5 3.88549659133155E-5 14-15 0.0 4.1963363186380746E-4 0.0 3.10839727306524E-5 4.66259590959786E-5 16-17 0.0 4.5071760459445984E-4 0.0 3.88549659133155E-5 4.66259590959786E-5 18-19 0.0 4.895725705077753E-4 0.0 5.43969522786417E-5 4.66259590959786E-5 20-21 0.0 5.36198529603754E-4 0.0 6.21679454613048E-5 4.66259590959786E-5 22-23 0.0 5.828244886997326E-4 0.0 9.32519181919572E-5 6.21679454613048E-5 24-25 0.0 6.527634273437005E-4 0.0 1.5541986365326204E-4 9.32519181919572E-5 26-27 0.0 6.91618393257016E-4 0.0 2.2535880229722992E-4 1.087939045572834E-4 28-29 0.0 6.993893864396791E-4 0.0 8.625802432756042E-4 1.087939045572834E-4 30-31 0.0 8.237252773622887E-4 0.0 0.0027198476139320854 1.087939045572834E-4 32-33 0.0 8.237252773622887E-4 0.0 0.006364443416601079 1.087939045572834E-4 34-35 0.0 0.00100245812056354 0.0 0.011190230183034864 1.243358909226096E-4 36-37 0.0 0.0011734199705821283 0.0 0.02042217008403863 1.243358909226096E-4 38-39 0.0 0.0012122749364954436 0.0 0.15536546670098336 1.243358909226096E-4 40-41 0.0 0.0013366108274180534 0.0 0.2941942599092597 1.243358909226096E-4 42-43 0.0 0.0013832367865140318 0.0 0.3144454681432797 1.243358909226096E-4 44-45 0.0 0.0015775116160806095 0.0 0.3427318833281734 1.3210688410527271E-4 46-47 0.0 0.0017407024729165345 0.0 0.37155449704267085 1.4764887047059893E-4 48-49 0.0 0.0017640154524645238 0.0 0.39817791968647465 1.7096185001858822E-4 50-51 0.0 0.0020437712070403955 0.0 0.42409418195065607 1.787328432012513E-4 52-53 0.0 0.0021137101456843634 0.0 0.8706309922128431 1.865038363839144E-4 54-55 0.0 0.002144794118415016 0.0 1.485487514811513 1.865038363839144E-4 56-57 0.0 0.002160336104780342 0.0 2.16809155597664 1.865038363839144E-4 58-59 0.0 0.002168107097963005 0.0 2.8699210342756754 2.2535880229722992E-4 60-61 0.0 0.0021914200775109945 0.0 3.053782732977484 2.486717818452192E-4 62-63 0.0 0.0022691300093376256 0.0 3.0599062756054227 2.6421376821054543E-4 64-65 0.0 0.0025022598048175184 0.0 3.06550139069694 2.6421376821054543E-4 66-67 7.7709931826631E-6 0.0025333437775481708 0.0 3.0709333149316214 2.6421376821054543E-4 68-69 1.55419863653262E-5 0.002618824702557465 0.0 3.076683849886792 2.6421376821054543E-4 70-71 1.55419863653262E-5 0.0026654506616534436 0.0 3.081012293089535 2.6421376821054543E-4 72-73 1.55419863653262E-5 0.0026732216548361067 0.0 3.0846646598853873 3.10839727306524E-4 74-75 1.55419863653262E-5 0.0027276186071147485 0.0 3.087687576233443 3.10839727306524E-4 76-77 1.55419863653262E-5 0.0028441835048546946 0.0 3.090578385697394 3.10839727306524E-4 78-79 1.55419863653262E-5 0.0028908094639506733 0.0 3.0925522179657903 3.10839727306524E-4 80-81 1.55419863653262E-5 0.0029063514503159995 0.0 3.093321546290874 3.10839727306524E-4 82-83 1.55419863653262E-5 0.002937435423046652 0.0 3.0938655158136603 3.10839727306524E-4 84-85 1.55419863653262E-5 0.0029840613821426306 0.0 3.094168584547784 3.10839727306524E-4 86-87 1.55419863653262E-5 0.0030384583344212723 0.0 3.0943162334182546 3.10839727306524E-4 88 1.55419863653262E-5 0.003155023232161219 0.0 3.0943162334182546 3.10839727306524E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7500 0.0 50.695396 1 GTATCAA 14525 0.0 38.228527 1 ATCAACG 16530 0.0 32.784996 3 TCAACGC 16875 0.0 32.241917 4 CAACGCA 16940 0.0 32.060196 5 AACGCAG 17410 0.0 31.218672 6 TATCAAC 17750 0.0 30.773922 2 ACGCAGA 20035 0.0 27.085455 7 CGCAGAG 20440 0.0 26.52774 8 GCAGAGT 23900 0.0 22.561384 9 GAGTACT 13865 0.0 20.484203 12-13 TACATGG 17610 0.0 20.467377 2 GTACATG 18080 0.0 20.220783 1 GTGGTAT 3870 0.0 19.893883 1 CAGAGTA 23490 0.0 19.321522 10-11 TGGTATC 3770 0.0 19.166616 2 ACATGGG 18195 0.0 18.934679 3 AGAGTAC 21505 0.0 18.815523 10-11 GTACTTT 15595 0.0 17.96409 14-15 CATGGGG 13095 0.0 17.637737 4 >>END_MODULE