##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138658_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8148182 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.78657312760073 33.0 33.0 33.0 33.0 33.0 2 32.78095592366493 33.0 33.0 33.0 33.0 33.0 3 32.77961452014695 33.0 33.0 33.0 33.0 33.0 4 36.722610147883294 37.0 37.0 37.0 37.0 37.0 5 36.738190433154294 37.0 37.0 37.0 37.0 37.0 6 36.747371867736874 37.0 37.0 37.0 37.0 37.0 7 36.73486895604443 37.0 37.0 37.0 37.0 37.0 8 36.72687797106152 37.0 37.0 37.0 37.0 37.0 9 36.72348347152776 37.0 37.0 37.0 37.0 37.0 10-11 36.695065169138346 37.0 37.0 37.0 37.0 37.0 12-13 36.67456127023181 37.0 37.0 37.0 37.0 37.0 14-15 38.92382386647721 40.0 40.0 40.0 37.0 40.0 16-17 38.87766596278777 40.0 38.5 40.0 37.0 40.0 18-19 38.90638568210676 40.0 40.0 40.0 37.0 40.0 20-21 38.940438420088626 40.0 40.0 40.0 37.0 40.0 22-23 38.96553799355547 40.0 40.0 40.0 37.0 40.0 24-25 38.973413906523106 40.0 40.0 40.0 37.0 40.0 26-27 38.879967109879786 40.0 40.0 40.0 37.0 40.0 28-29 38.80639441674504 40.0 38.5 40.0 37.0 40.0 30-31 38.73885297642286 40.0 37.0 40.0 37.0 40.0 32-33 38.419573155489935 40.0 37.0 40.0 37.0 40.0 34-35 38.56252987429128 40.0 37.0 40.0 37.0 40.0 36-37 38.53236005932725 40.0 37.0 40.0 37.0 40.0 38-39 38.56398581984666 40.0 37.0 40.0 37.0 40.0 40-41 38.5304668300474 40.0 37.0 40.0 37.0 40.0 42-43 38.228203091210894 40.0 37.0 40.0 37.0 40.0 44-45 38.13280651208923 40.0 37.0 40.0 35.0 40.0 46-47 38.15595329199071 40.0 37.0 40.0 37.0 40.0 48-49 38.022891314919974 40.0 37.0 40.0 35.0 40.0 50-51 38.12092860486102 40.0 37.0 40.0 37.0 40.0 52-53 38.10025397691227 40.0 37.0 40.0 37.0 40.0 54-55 38.03853221656945 40.0 37.0 40.0 37.0 40.0 56-57 37.92348143003142 40.0 37.0 40.0 33.0 40.0 58-59 37.7915413415965 40.0 37.0 40.0 33.0 40.0 60-61 37.54687954170896 38.5 37.0 40.0 33.0 40.0 62-63 37.355606192631775 37.0 37.0 40.0 33.0 40.0 64-65 37.18548884931512 37.0 37.0 40.0 33.0 40.0 66-67 36.95479739799211 37.0 37.0 40.0 33.0 40.0 68-69 36.68969613851817 37.0 37.0 40.0 33.0 40.0 70-71 36.24504403347652 37.0 37.0 38.5 33.0 40.0 72-73 36.1507154845552 37.0 37.0 37.0 33.0 40.0 74-75 35.92323457477017 37.0 37.0 37.0 33.0 40.0 76-77 33.8612750530592 35.0 33.0 37.0 27.0 37.0 78-79 35.28936532796021 37.0 33.0 37.0 33.0 37.0 80-81 35.605691449111625 37.0 37.0 37.0 33.0 37.0 82-83 35.61174246633066 37.0 37.0 37.0 33.0 37.0 84-85 35.51226766574824 37.0 35.0 37.0 33.0 37.0 86-87 35.07743632545998 37.0 33.0 37.0 33.0 37.0 88-89 35.004770324048714 37.0 33.0 37.0 33.0 37.0 90-91 35.18134860766399 37.0 33.0 37.0 33.0 37.0 92-93 35.17919010926029 37.0 33.0 37.0 33.0 37.0 94-95 35.15328001046218 37.0 33.0 37.0 33.0 37.0 96-97 35.11299130392469 37.0 33.0 37.0 33.0 37.0 98-99 35.078029296806065 37.0 33.0 37.0 33.0 37.0 100 35.02323040832018 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 30.0 21 149.0 22 548.0 23 1633.0 24 4258.0 25 8822.0 26 16282.0 27 26238.0 28 40050.0 29 57548.0 30 79056.0 31 107000.0 32 143571.0 33 195445.0 34 280040.0 35 434738.0 36 868796.0 37 2442217.0 38 3306983.0 39 134774.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.97933968583422 20.010917772823436 14.507506091542874 23.502236449799476 2 14.723971555863628 20.6160343497482 41.68088047125113 22.97911362313704 3 18.2712615712999 26.002725308290835 30.298822948112004 25.427190172297266 4 12.510814939191475 17.96329947547008 38.631447615435555 30.894437969902892 5 13.521759724254782 37.521373826273 35.16138182408232 13.795484625389903 6 29.938580164262408 37.545430379439246 18.687125545305687 13.828863910992661 7 26.629559820828746 32.8025073568558 22.65731177825925 17.910621044056207 8 24.746194918081112 36.11921039564409 20.878068261116407 18.2565264251584 9 25.807106419566967 16.933998283298042 21.214744589652025 36.04415070748297 10-11 24.502250931557494 26.644305441385573 28.350587898012098 20.502855729044835 12-13 25.383202044333323 24.27202779712088 28.589500087258727 21.755270071287068 14-15 22.503479917360707 25.5571733670161 26.6160782859293 25.323268429693886 16-17 21.691973743345446 28.651108922211115 27.255368129970588 22.40154920447285 18-19 21.66539112651141 27.689520189902485 29.311802313694024 21.333286369892082 20-21 22.7044449694556 26.748241127396682 29.217007906872567 21.330305996275147 22-23 22.40214774880309 26.73087099852387 29.020948786665656 21.846032466007387 24-25 22.078091642372254 26.93434072505907 29.18316449246178 21.804403140106892 26-27 22.04864008739669 27.125765493528824 29.020840933929286 21.8047534851452 28-29 21.949984206852903 27.223370438979394 29.056433092672044 21.770212261495654 30-31 22.275453097919584 27.002882667597838 28.947236544719274 21.774427689763304 32-33 22.068139758679397 27.083752806770793 28.855947886594123 21.992159547955684 34-35 22.135871648792506 27.15296775079217 28.942383887465954 21.768776712949368 36-37 22.143292147372694 27.15321265592311 28.801891753460374 21.901603443243822 38-39 22.03513999836964 27.213825648555506 28.881924714399528 21.869109638675326 40-41 22.31136622184879 27.11516015489166 28.740175692834924 21.83329793042463 42-43 22.281260656497974 27.197272393055204 28.48026877867545 22.041198171771363 44-45 22.417574472727107 27.388068176547044 28.17531221778516 22.019045132940683 46-47 22.374285677345952 27.307824580456646 27.84654022186021 22.471349520337185 48-49 22.41912212519762 27.509709405590684 27.741941296180755 22.32922717303094 50-51 22.28729763486515 27.616079105902504 27.665600625047038 22.431022634185307 52-53 22.424467925294156 27.62850824090277 27.50868096144363 22.438342872359442 54-55 22.486228390925803 27.51070238262146 27.491946369826493 22.511122856626244 56-57 22.50205008335289 27.586088524426632 27.444448849486424 22.46741254273405 58-59 22.403956942681504 27.763486149228218 27.539572785515492 22.292984122574786 60-61 22.595475843074876 27.676467025289835 27.4240016591617 22.304055472473586 62-63 22.50033394324668 27.759148751941854 27.334480521195587 22.40603678361588 64-65 22.415417873366852 27.742375676039522 27.32764955757726 22.514556893016362 66-67 22.495143649071558 27.779505883392858 27.19685601699951 22.528494450536073 68-69 22.478128954848216 27.631456358298596 27.31268267168696 22.577732015166227 70-71 22.46108691675023 27.466158552941717 27.294103679116837 22.778650851191216 72-73 22.55434028634838 27.453706122657827 27.28627018854109 22.705683402452696 74-75 22.447124827294523 27.62916872091013 27.24251054697422 22.681195904821127 76-77 22.634373951738326 27.56002361007833 27.042922723615476 22.762679714567877 78-79 22.594864831009367 27.6025352994618 27.026329531843352 22.776270337685478 80-81 22.524620323646 27.637659404664372 27.10146837593851 22.736251895751113 82-83 22.59765459172323 27.567757088730318 27.251729735402336 22.58285858414412 84-85 22.786343513492916 27.55339233101169 27.107624038037514 22.55264011745788 86-87 22.621788654038888 27.6486037085496 27.095151179111543 22.63445645829997 88-89 22.6885821416328 27.637766866055657 27.09960420414675 22.574046788164797 90-91 22.657876983142764 27.70014330528744 27.161653332543416 22.48032637902638 92-93 22.735526087160554 27.66733559260983 27.133267613922452 22.46387070630716 94-95 22.49939215867432 27.76111872022049 27.196446369772538 22.543042751332656 96-97 22.486337527594774 27.857513038247735 27.327363272532164 22.32878616162533 98-99 23.70513121484981 29.698726867356264 27.40266704864625 19.19347486914768 100 22.67169315959393 30.709324851450436 21.27952342716638 25.33945856178925 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2303.0 1 2073.5 2 2739.5 3 3868.0 4 5441.0 5 8997.0 6 11731.5 7 13311.5 8 14241.0 9 13893.0 10 12693.5 11 11504.0 12 12909.0 13 17666.0 14 27830.0 15 41279.0 16 52338.5 17 58895.5 18 59853.5 19 56153.0 20 49962.0 21 43237.0 22 38850.0 23 39632.5 24 44847.0 25 53679.5 26 66095.0 27 80455.5 28 95267.0 29 111900.5 30 127343.0 31 140904.0 32 158316.0 33 176996.5 34 195886.0 35 213624.5 36 230484.5 37 247153.5 38 258118.5 39 264825.0 40 275848.5 41 287443.5 42 295298.0 43 305317.5 44 315367.0 45 324833.0 46 333667.5 47 339314.5 48 339402.5 49 336874.0 50 332232.5 51 323068.5 52 312785.5 53 300352.0 54 287433.0 55 271405.5 56 251025.5 57 228776.5 58 205015.5 59 179923.5 60 150041.0 61 120651.0 62 95774.5 63 73615.0 64 54868.5 65 40788.0 66 30897.0 67 23462.5 68 17642.5 69 13012.0 70 9259.0 71 6313.0 72 4250.0 73 2769.0 74 1752.0 75 1146.0 76 747.5 77 486.5 78 325.0 79 228.5 80 164.0 81 113.0 82 79.5 83 47.5 84 25.0 85 15.0 86 11.0 87 10.0 88 6.5 89 4.0 90 3.5 91 3.5 92 3.5 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0013868124202429451 4 0.01088586386509285 5 0.011671315147354342 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 3.6818950664815246E-5 22-23 0.0 24-25 0.005806627399706932 26-27 0.046768813472070785 28-29 0.08251000979122879 30-31 0.0751191950490108 32-33 0.03450211961413126 34-35 0.0031673911145894676 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.3378166422353695E-4 56-57 4.644343573191018E-4 58-59 2.7141006417016E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 1.4287284866529255E-4 72-73 0.013071453653013721 74-75 0.029113194367127414 76-77 0.002433667175782021 78-79 0.0 80-81 0.0 82-83 0.007668625581163928 84-85 0.0470805390429035 86-87 0.03993753045773905 88-89 0.009922208336298368 90-91 1.0971027631865287E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 121.0 20-21 475.0 22-23 1189.0 24-25 2351.0 26-27 3970.0 28-29 8001.0 30-31 18465.0 32-33 23999.0 34-35 32272.0 36-37 46164.0 38-39 53238.0 40-41 57015.0 42-43 66324.0 44-45 79719.0 46-47 78355.0 48-49 67712.0 50-51 57049.0 52-53 52516.0 54-55 55853.0 56-57 59785.0 58-59 58297.0 60-61 59937.0 62-63 60004.0 64-65 61447.0 66-67 65474.0 68-69 63698.0 70-71 61344.0 72-73 58787.0 74-75 59281.0 76-77 58205.0 78-79 61531.0 80-81 62985.0 82-83 60438.0 84-85 61395.0 86-87 63798.0 88-89 68288.0 90-91 72512.0 92-93 76231.0 94-95 91613.0 96-97 262654.0 98-99 493116.0 100-101 5402574.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.73484425970697 #Duplication Level Percentage of deduplicated Percentage of total 1 88.25883416023281 73.02080898790166 2 7.831251770703866 12.958347912154778 3 2.110328596467502 5.237931232966344 4 0.8437816453726642 2.7924057207642674 5 0.3737907741178084 1.5462760741176094 6 0.20248959073932718 1.0051766852418023 7 0.11746911609923809 0.6803152318057132 8 0.07680831894989826 0.5083779444935786 9 0.04599025392341302 0.34244968462361586 >10 0.13696085760019114 1.65746028448381 >50 0.0018212236014357476 0.10021896520361767 >100 3.724478312590342E-4 0.055556624761432104 >500 5.062220638714196E-5 0.027014021317085163 >1k 5.062215418260863E-5 0.0676606301647834 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2272676285335796E-5 0.0 0.0 0.0 3 0.0 1.2272676285335796E-5 0.0 6.136338142667898E-5 0.0 4 0.0 3.681802885600739E-5 0.0 8.590873399735058E-5 1.2272676285335796E-5 5 0.0 3.681802885600739E-5 0.0 9.818141028268637E-5 1.2272676285335796E-5 6 8.590873399735058E-5 3.681802885600739E-5 0.0 1.1045408656802217E-4 1.2272676285335796E-5 7 8.590873399735058E-5 3.681802885600739E-5 0.0 1.1045408656802217E-4 1.2272676285335796E-5 8 8.590873399735058E-5 6.136338142667898E-5 0.0 1.2272676285335796E-4 1.2272676285335796E-5 9 8.590873399735058E-5 1.5954479170936535E-4 0.0 1.7181746799470115E-4 2.454535257067159E-5 10-11 8.590873399735058E-5 1.5954479170936535E-4 0.0 1.9022648242270486E-4 2.454535257067159E-5 12-13 8.590873399735058E-5 1.5954479170936535E-4 0.0 2.3318084942138012E-4 3.068169071333949E-5 14-15 8.590873399735058E-5 2.2704451127871224E-4 0.0 2.577262019920517E-4 5.522704328401109E-5 16-17 1.8409014428003695E-4 2.3318084942138014E-4 0.0 2.6999887827738753E-4 7.363605771201478E-5 18-19 1.8409014428003695E-4 2.6386254013471963E-4 0.0 3.190895834187307E-4 8.590873399735058E-5 20-21 1.8409014428003695E-4 3.068169071333949E-4 0.0 3.497712741320702E-4 8.590873399735058E-5 22-23 1.8409014428003695E-4 3.436349359894023E-4 0.0 3.927256411307455E-4 8.590873399735058E-5 24-25 1.9022648242270486E-4 4.172709937014171E-4 0.0 4.295436699867529E-4 9.818141028268637E-5 26-27 1.9636282056537273E-4 4.540890225574245E-4 0.0 5.890884616961182E-4 9.818141028268637E-5 28-29 1.9636282056537273E-4 4.540890225574245E-4 0.0 0.0013193127006735981 9.818141028268637E-5 30-31 2.0249915870804063E-4 5.093160658414355E-4 0.0 0.0029699876610512627 1.0431774842535427E-4 32-33 2.0863549685070854E-4 5.277250802694393E-4 0.0 0.006866562381645378 1.3499943913869376E-4 34-35 2.2090817313604434E-4 5.890884616961182E-4 0.0 0.01182472360092104 1.4727211542402957E-4 36-37 2.2090817313604434E-4 6.504518431227972E-4 0.0 0.02005968938838136 1.4727211542402957E-4 38-39 2.2090817313604434E-4 6.688608575508008E-4 0.0 0.03967142609234796 1.5954479170936535E-4 40-41 2.3318084942138014E-4 6.995425482641404E-4 0.0 0.060074750416718725 1.5954479170936535E-4 42-43 2.454535257067159E-4 7.118152245494762E-4 0.0 0.07266037994733059 1.5954479170936535E-4 44-45 2.515898638493838E-4 7.731786059761551E-4 0.0 0.08922235659439123 1.5954479170936535E-4 46-47 2.577262019920517E-4 8.222693111174983E-4 0.0 0.1066802386102814 1.5954479170936535E-4 48-49 2.577262019920517E-4 8.222693111174983E-4 0.0 0.12165290367839107 1.5954479170936535E-4 50-51 2.7613521642005543E-4 9.08178045114849E-4 0.0 0.13650897832179004 1.5954479170936535E-4 52-53 2.8227155456272333E-4 9.08178045114849E-4 0.0 0.1817828811383938 1.9022648242270486E-4 54-55 2.8227155456272333E-4 9.449960739708564E-4 0.0 0.23818196500765448 2.2090817313604434E-4 56-57 2.9454423084805914E-4 0.001030904807968207 0.0 0.2959003615775887 2.2704451127871224E-4 58-59 2.9454423084805914E-4 0.0010370411461108747 0.0 0.338652229417556 2.3931718756404802E-4 60-61 3.252259215613986E-4 0.00107999551310955 0.0 0.3680268801065072 2.515898638493838E-4 62-63 3.9272564113074546E-4 0.0011168135419655574 0.0 0.3881479328763152 2.577262019920517E-4 64-65 3.9272564113074546E-4 0.0012886310099602587 0.0 0.393584728470719 2.577262019920517E-4 66-67 4.0499831741608127E-4 0.0013009036862455944 0.0 0.39884970659712804 2.577262019920517E-4 68-69 4.0499831741608127E-4 0.0013193127006735981 0.0 0.403764913449405 2.577262019920517E-4 70-71 4.356800081294208E-4 0.0013438580532442697 0.0 0.40827512198426597 2.6999887827738753E-4 72-73 4.909070514134318E-4 0.0013499943913869376 0.0 0.41174215303487327 3.313622597040665E-4 74-75 4.909070514134318E-4 0.0013622670676722735 0.0 0.4144175964650765 3.313622597040665E-4 76-77 4.909070514134318E-4 0.0013990850965282808 0.0 0.41720349398184775 3.374985978467344E-4 78-79 5.031797276987676E-4 0.0013990850965282808 0.0 0.41893394133808004 3.436349359894023E-4 80-81 5.031797276987676E-4 0.0014052214346709487 0.0 0.41960280219563084 3.62043950417406E-4 82-83 5.031797276987676E-4 0.0014113577728136165 0.0 0.4199587098079056 4.1727099370141707E-4 84-85 5.215887421267714E-4 0.0014236304490989524 0.0 0.42010598192332965 4.23407331844085E-4 86-87 5.277250802694393E-4 0.001448175801669624 0.0 0.42021643600989766 4.295436699867529E-4 88 5.277250802694393E-4 0.0015954479170936535 0.0 0.42021643600989766 4.295436699867529E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13230 0.0 50.102577 1 GTATCAA 24185 0.0 38.328613 1 ATCAACG 29360 0.0 31.093988 3 TCAACGC 29510 0.0 30.906876 4 TATCAAC 30055 0.0 30.559225 2 CAACGCA 29990 0.0 30.437435 5 AACGCAG 30525 0.0 29.968039 6 ACGCAGA 34965 0.0 26.126034 7 CGCAGAG 35520 0.0 25.705826 8 GCAGAGT 40080 0.0 22.78121 9 GAGTACT 24220 0.0 21.021088 12-13 TACATGG 27790 0.0 20.66387 2 GTACATG 28325 0.0 20.619486 1 GTGGTAT 6685 0.0 20.391956 1 TGGTATC 6590 0.0 19.9102 2 CAGAGTA 39360 0.0 19.849169 10-11 ACATGGG 28350 0.0 19.774847 3 AGAGTAC 37090 0.0 18.951273 10-11 GTACTTT 26960 0.0 18.853771 14-15 CATGGGG 21145 0.0 17.890106 4 >>END_MODULE