##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138657_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8425133 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.844098484854776 33.0 33.0 33.0 33.0 33.0 2 32.88898513530884 33.0 33.0 33.0 33.0 33.0 3 33.55269074090581 33.0 33.0 33.0 33.0 37.0 4 36.71496806044486 37.0 37.0 37.0 37.0 37.0 5 36.73189752612807 37.0 37.0 37.0 37.0 37.0 6 36.73750705181746 37.0 37.0 37.0 37.0 37.0 7 36.729112169505214 37.0 37.0 37.0 37.0 37.0 8 36.71133856284524 37.0 37.0 37.0 37.0 37.0 9 36.71425483728269 37.0 37.0 37.0 37.0 37.0 10-11 36.69887887823255 37.0 37.0 37.0 37.0 37.0 12-13 36.929979740379174 37.0 37.0 37.0 37.0 38.5 14-15 38.895379040307134 40.0 40.0 40.0 37.0 40.0 16-17 38.84628242663943 40.0 37.0 40.0 37.0 40.0 18-19 38.880060587767574 40.0 40.0 40.0 37.0 40.0 20-21 38.91755356310583 40.0 40.0 40.0 37.0 40.0 22-23 38.9449695969422 40.0 40.0 40.0 37.0 40.0 24-25 38.9375310299023 40.0 40.0 40.0 37.0 40.0 26-27 38.84385238531155 40.0 40.0 40.0 37.0 40.0 28-29 38.771625766534044 40.0 37.0 40.0 37.0 40.0 30-31 38.67089736141554 40.0 37.0 40.0 37.0 40.0 32-33 38.4218250149619 40.0 37.0 40.0 37.0 40.0 34-35 38.52471588543063 40.0 37.0 40.0 37.0 40.0 36-37 38.51143227785683 40.0 37.0 40.0 37.0 40.0 38-39 38.52654466681808 40.0 37.0 40.0 37.0 40.0 40-41 38.45886574385152 40.0 37.0 40.0 37.0 40.0 42-43 38.20579986347883 40.0 37.0 40.0 37.0 40.0 44-45 38.07529370931003 40.0 37.0 40.0 35.0 40.0 46-47 38.095328509105926 40.0 37.0 40.0 35.0 40.0 48-49 37.98820145878028 40.0 37.0 40.0 33.0 40.0 50-51 38.06830613368719 40.0 37.0 40.0 37.0 40.0 52-53 38.04668462996554 40.0 37.0 40.0 37.0 40.0 54-55 37.97835694869088 40.0 37.0 40.0 33.0 40.0 56-57 37.85753126239028 40.0 37.0 40.0 33.0 40.0 58-59 37.72327012293894 40.0 37.0 40.0 33.0 40.0 60-61 37.46843225827169 38.5 37.0 40.0 33.0 40.0 62-63 37.28272483204795 37.0 37.0 40.0 33.0 40.0 64-65 37.10385250189957 37.0 37.0 40.0 33.0 40.0 66-67 36.86244931947659 37.0 37.0 40.0 33.0 40.0 68-69 36.56669595556518 37.0 37.0 40.0 33.0 40.0 70-71 36.165986890995725 37.0 37.0 38.5 33.0 40.0 72-73 36.04297256497733 37.0 37.0 37.0 33.0 40.0 74-75 35.580865093047564 37.0 35.0 37.0 33.0 40.0 76-77 33.98088254411479 35.0 33.0 37.0 27.0 37.0 78-79 35.27167198161716 37.0 33.0 37.0 33.0 37.0 80-81 35.55575851077661 37.0 35.0 37.0 33.0 37.0 82-83 35.54847106368746 37.0 37.0 37.0 33.0 37.0 84-85 35.41290704121316 37.0 33.0 37.0 33.0 37.0 86-87 35.03604669231699 37.0 33.0 37.0 33.0 37.0 88-89 34.99297933150238 37.0 33.0 37.0 33.0 37.0 90-91 35.136047103311306 37.0 33.0 37.0 33.0 37.0 92-93 35.12049095359863 37.0 33.0 37.0 33.0 37.0 94-95 35.09492883382653 37.0 33.0 37.0 33.0 37.0 96-97 35.054660150584006 37.0 33.0 37.0 33.0 37.0 98-99 35.01949940627388 37.0 33.0 37.0 33.0 37.0 100 34.94632524102944 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 2.0 17 2.0 18 2.0 19 6.0 20 40.0 21 169.0 22 656.0 23 1905.0 24 4718.0 25 9568.0 26 17260.0 27 28606.0 28 42871.0 29 61672.0 30 84431.0 31 113955.0 32 153160.0 33 207718.0 34 297836.0 35 461462.0 36 913412.0 37 2521071.0 38 3348419.0 39 156191.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.13284030003594 0.0 24.324520327534646 29.542639372429413 2 15.27376775932902 23.40920482763426 38.142051843074704 23.174975569962015 3 16.872147655268623 24.465098380781562 32.68921634015113 25.97353762379869 4 13.349128308712594 22.661433171442553 36.90352482218485 27.085913697660004 5 17.629350458192867 36.276031527467836 31.754558188120225 14.340059826219079 6 28.422459324974454 36.631801539512786 20.104382921907582 14.841356213605176 7 26.579319281962672 32.91362878188392 21.912888496834412 18.594163439319 8 24.694779299033023 31.719962165582434 21.82786906746754 21.757389467917005 9 24.338962957617404 20.37760116071758 23.27451685332445 32.00891902834056 10-11 25.09442877637659 25.80330779347934 28.012068177440046 21.09019525270402 12-13 25.39287510357403 23.901325949394508 28.138054319142498 22.56774462788896 14-15 22.77922496891147 26.174607569993256 26.490857770435195 24.555309690660078 16-17 21.72083811614606 28.585370699785983 27.31018014789796 22.38361103616999 18-19 21.82166738495404 27.540716567916494 29.255823023802712 21.381793023326754 20-21 22.756497300140868 26.723667649311256 29.196419796403134 21.323415254144745 22-23 22.641154883166685 26.447783900577853 28.94294677112892 21.968114445126545 24-25 22.19893606283879 26.759165474289176 29.233638700714238 21.808259762157796 26-27 22.155541682454135 27.022261178345214 28.94489716215326 21.87729997704739 28-29 22.12806037004807 26.91630592291358 28.9988320888162 21.956801618222148 30-31 22.32002295719958 26.793151594394544 29.02413024864126 21.862695199764616 32-33 22.23598768376752 27.015408180181055 28.757470734984146 21.99113340106728 34-35 22.289425756342023 26.852563014436235 28.84667043831123 22.011340790910513 36-37 22.260134478169217 26.995245965456494 28.852573697998125 21.892045858376168 38-39 22.112791415125155 27.22039875630618 28.797621496062035 21.869188332506624 40-41 22.43696182318084 26.946199124692367 28.486646540956485 22.130192511170304 42-43 22.30849248637969 27.07441629706257 28.49109024294252 22.126000973615223 44-45 22.486221255691643 27.35529370960937 28.083931867186106 22.074553167512878 46-47 22.547413034214113 27.067938300158257 27.814508836127988 22.570139829499645 48-49 22.424920121341827 27.32289460966139 27.788417884941403 22.463767384055377 50-51 22.360879954185258 27.645583988060775 27.568519538260013 22.42501651949396 52-53 22.533378888054063 27.36779989484117 27.468272032463958 22.63054918464081 54-55 22.555122663014693 27.313458789590783 27.55693743676461 22.57448111062991 56-57 22.54512707478766 27.588969005219553 27.404156724769113 22.461747195223676 58-59 22.55639210918844 27.395427741818274 27.42450467770216 22.623675471291126 60-61 22.72761928107967 27.37750154114605 27.48325167153804 22.411627506236247 62-63 22.450669165442356 27.532068156520705 27.427216570045054 22.590046107991885 64-65 22.54873753558749 27.327651389578143 27.368625142400198 22.75498593243416 66-67 22.496319152157497 27.48789541034605 27.42378754969812 22.59199788779834 68-69 22.537738217780824 27.590889038462603 27.363931042564904 22.507441701191674 70-71 22.585817954876163 27.198791003409934 27.21701428253801 22.998376759175894 72-73 22.518908671096046 27.33749377658335 27.220316896757534 22.923280655563065 74-75 22.475987933043516 27.485140389010894 27.36746795590015 22.671403722045444 76-77 22.76368680402108 27.156775775248814 27.0334841204516 23.0460533002785 78-79 22.629265290398088 27.243703031333293 27.016275521713702 23.110756156554917 80-81 22.77956634870561 27.48698268963969 26.988007380073803 22.7454435815809 82-83 22.833394209867752 27.088318833286383 27.116728690009882 22.961558266835983 84-85 22.76874363359317 27.22038917319371 27.07734726603872 22.933519927174395 86-87 22.705660778381297 27.420478652489095 26.993126768312376 22.880733800817236 88-89 22.95718407921827 27.243583527493925 27.067343242855685 22.73188915043212 90-91 22.88795233114484 27.316243969681825 27.102401583609215 22.693402115564115 92-93 22.802562977864334 27.200415677710847 27.09727829084513 22.899743053579687 94-95 22.937825011767735 27.214277231034984 27.12476005946981 22.723137697727473 96-97 22.985080583896643 27.387457596367266 27.3637249985828 22.26373682115329 98-99 23.874574235177416 29.54440978536349 26.882729528895315 19.698286450563774 100 23.049058890871745 29.7153663984197 21.255665173911577 25.979909536796974 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1798.0 1 1651.0 2 2413.0 3 3584.0 4 5101.5 5 8438.0 6 11116.0 7 13062.5 8 14754.0 9 15095.5 10 14128.0 11 12878.0 12 13856.5 13 17738.0 14 27304.5 15 41439.5 16 53944.0 17 61483.5 18 62199.0 19 57392.5 20 50412.5 21 43514.0 22 39079.0 23 39433.5 24 44995.0 25 55096.0 26 68670.5 27 83956.5 28 98705.0 29 115784.0 30 131396.0 31 145520.0 32 164147.5 33 181600.0 34 198641.0 35 216019.5 36 233961.5 37 250901.5 38 261108.0 39 266796.5 40 276235.0 41 286531.0 42 292684.5 43 300900.5 44 311510.0 45 321946.5 46 330277.5 47 335243.5 48 337964.0 49 341596.0 50 342952.5 51 337836.0 52 328485.5 53 317415.5 54 306348.0 55 290447.0 56 269770.0 57 247342.0 58 223729.5 59 198756.5 60 168735.5 61 137692.0 62 109584.5 63 85196.0 64 64920.5 65 48741.5 66 37112.0 67 28437.5 68 21406.0 69 15169.5 70 10450.0 71 7514.5 72 5310.0 73 3628.5 74 2450.0 75 1648.0 76 1094.0 77 710.5 78 474.0 79 317.5 80 215.5 81 150.5 82 109.5 83 79.5 84 58.0 85 43.0 86 30.5 87 18.0 88 14.0 89 13.0 90 9.5 91 6.0 92 3.5 93 2.0 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.0682323946696154E-4 2 6.409394368017692E-4 3 0.003157220188690197 4 0.011097747655734336 5 0.008700159392142533 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 8.30871283675955E-5 22-23 4.5701679851304543E-4 24-25 0.01010400715900371 26-27 0.05016397270633297 28-29 0.0822433118557528 30-31 0.06987912690306516 32-33 0.029333090093988184 34-35 0.00233427905551957 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.453699814493837E-4 56-57 4.163447042710071E-4 58-59 2.6177743211522185E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 6.7560181596363315E-6 68-69 1.1589563121192061E-4 70-71 0.001355204732567544 72-73 0.014879152343574065 74-75 0.02523116196921798 76-77 0.0022107954625718686 78-79 5.702077972637581E-5 80-81 7.123850442603389E-4 82-83 0.011892942305208208 84-85 0.04490880607925733 86-87 0.03510750831738284 88-89 0.007951746228180524 90-91 1.2119134424151375E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 151.0 20-21 521.0 22-23 1162.0 24-25 3041.0 26-27 3683.0 28-29 9705.0 30-31 19739.0 32-33 25388.0 34-35 35312.0 36-37 47595.0 38-39 53599.0 40-41 58288.0 42-43 67938.0 44-45 81641.0 46-47 78908.0 48-49 68443.0 50-51 57818.0 52-53 54795.0 54-55 56507.0 56-57 55357.0 58-59 42198.0 60-61 61864.0 62-63 60116.0 64-65 63528.0 66-67 67132.0 68-69 66141.0 70-71 64362.0 72-73 62490.0 74-75 63544.0 76-77 62854.0 78-79 65813.0 80-81 66770.0 82-83 65268.0 84-85 66985.0 86-87 70426.0 88-89 75105.0 90-91 79145.0 92-93 85272.0 94-95 110891.0 96-97 419634.0 98-99 1471154.0 100-101 4454850.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.03097318895942 #Duplication Level Percentage of deduplicated Percentage of total 1 88.35781902861372 72.4807788377114 2 7.728128297093568 12.678917702794424 3 2.0881440189294787 5.138774580944702 4 0.7837488639945015 2.571667281968415 5 0.3717453749462052 1.5247317442665915 6 0.19871528327155666 0.9780484844571325 7 0.12847287088246268 0.7377128238807559 8 0.08438797218113807 0.5537941986769273 9 0.05318809936983152 0.3926764398040524 >10 0.20120190649672537 2.5439563541337846 >50 0.00366686375384072 0.19238508303825344 >100 6.738060822721587E-4 0.11017995545420702 >500 5.380724118823633E-5 0.02584315227439419 >1k 5.380714358294693E-5 0.07053336059498029 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.7803873244493588E-4 0.0 0.0 0.0 3 0.0 1.7803873244493588E-4 0.0 0.0 0.0 4 0.0 1.899079812745983E-4 0.0 0.0 0.0 5 0.0 1.899079812745983E-4 0.0 0.0 0.0 6 0.0 2.0177723010426067E-4 0.0 0.0 0.0 7 0.0 2.0177723010426067E-4 0.0 0.0 0.0 8 0.0 2.2551572776358545E-4 0.0 0.0 0.0 9 0.0 4.1542370903818374E-4 0.0 0.0 0.0 10-11 0.0 4.1542370903818374E-4 0.0 1.1869248829662393E-5 0.0 12-13 0.0 4.1542370903818374E-4 0.0 4.154237090381838E-5 0.0 14-15 0.0 5.993970658979507E-4 0.0 5.9346244148311964E-5 0.0 16-17 0.0 7.002856809500812E-4 0.0 7.715011739280555E-5 0.0 18-19 0.0 7.002856809500812E-4 0.0 3.4420821606020936E-4 0.0 20-21 0.0 7.062203053649124E-4 0.0 9.198667842988354E-4 0.0 22-23 0.0 8.367820424911986E-4 0.0 0.0016557602117379037 0.0 24-25 0.0 8.78324413395017E-4 0.0 0.0028842274656079615 0.0 26-27 0.0 9.139321598840042E-4 0.0 0.007531038382420788 0.0 28-29 0.0 9.139321598840042E-4 0.0 0.01894332113214118 0.0 30-31 0.0 0.0011038401411586026 0.0 0.020937354935524462 0.0 32-33 0.0 0.0011275786388179273 0.0 0.024367567847296892 0.0 34-35 0.0 0.0012284672538700576 0.0 0.028699843670123664 0.0 36-37 0.0 0.001335290493337019 0.0 0.03548905400069055 0.0 38-39 0.0 0.0013887021130705 0.0 0.05446204825490589 0.0 40-41 0.0 0.0015073946013671239 0.0 0.07136385858834512 0.0 42-43 0.0 0.0017447795779603715 0.0 0.081915620797915 0.0 44-45 0.0 0.0019821645545536194 0.0 0.09715573629520151 0.0 46-47 0.0 0.0019821645545536194 0.0 0.1128468832480152 0.0 48-49 0.0 0.0019880991789684504 0.0 0.1274579285573296 0.0 50-51 0.0 0.002201745657902374 0.0 0.14477516259980705 0.0 52-53 0.0 0.0022551572776358547 0.0 0.1857656134330461 0.0 54-55 0.0 0.0022610919020506857 0.0 0.23664314854139396 0.0 56-57 0.0 0.002302634272954504 0.0 0.2946422329475392 0.0 58-59 0.0 0.0023085688973693355 0.0 0.502003944626156 0.0 60-61 0.0 0.0023441766438583225 0.0 0.6290345802256179 0.0 62-63 0.0 0.0024094575124214658 0.0 0.6357881828096956 0.0 64-65 0.0 0.0027655349773113374 0.0 0.6412421026469255 0.0 66-67 0.0 0.0027655349773113374 0.0 0.646571395371444 0.0 68-69 0.0 0.002842685094704143 0.0 0.6517582571100065 1.1869248829662393E-5 70-71 0.0 0.0028842274656079615 0.0 0.656482218144212 1.1869248829662393E-5 72-73 0.0 0.0028901620900227925 0.0 0.6599124310559845 1.1869248829662393E-5 74-75 0.0 0.002913900587682117 0.0 0.6625474042961697 1.1869248829662393E-5 76-77 1.1869248829662393E-5 0.003038527700393572 0.0 0.664885646315613 1.1869248829662393E-5 78-79 1.1869248829662393E-5 0.003086004695712222 0.0 0.6662802830530984 1.1869248829662393E-5 80-81 1.1869248829662393E-5 0.0030919393201270535 0.0 0.6667965953771887 1.1869248829662393E-5 82-83 1.1869248829662393E-5 0.0030978739445418845 0.0 0.6672357575838862 1.1869248829662393E-5 84-85 1.1869248829662393E-5 0.0031038085689567155 0.0 0.667490946433724 1.1869248829662393E-5 86-87 3.5607746488987174E-5 0.0031631548131050274 0.0 0.6675799657999464 1.1869248829662393E-5 88 3.5607746488987174E-5 0.00332338967230547 0.0 0.6675859004243613 1.1869248829662393E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13400 0.0 51.4692 1 GTATCAA 24815 0.0 37.681274 1 ATCAACG 29570 0.0 31.088907 3 TCAACGC 30875 0.0 29.773804 4 TATCAAC 31190 0.0 29.59708 2 AACGCAG 31535 0.0 29.185472 6 CAACGCA 31575 0.0 29.177555 5 ACGCAGA 32505 0.0 28.327637 7 GTGGTAT 6080 0.0 26.274414 1 CGCAGAG 37040 0.0 24.83634 8 TGGTATC 6210 0.0 24.078026 2 GTACATG 29970 0.0 22.40138 1 ACATGGG 28675 0.0 22.18001 3 TACATGG 29365 0.0 22.123058 2 GCAGAGT 42135 0.0 21.701704 9 GAGTACT 24845 0.0 20.664886 12-13 CGAGACC 7225 0.0 19.480038 86-87 CAGAGTA 40750 0.0 19.403147 10-11 AGAGTAC 38240 0.0 19.09521 10-11 AGACCGA 7675 0.0 18.844072 88-89 >>END_MODULE