##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138655_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8278609 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.79052362540615 33.0 33.0 33.0 33.0 33.0 2 32.78288369459169 33.0 33.0 33.0 33.0 33.0 3 32.78004070490586 33.0 33.0 33.0 33.0 33.0 4 36.724898228675855 37.0 37.0 37.0 37.0 37.0 5 36.74028777056629 37.0 37.0 37.0 37.0 37.0 6 36.748937049690355 37.0 37.0 37.0 37.0 37.0 7 36.73644171381932 37.0 37.0 37.0 37.0 37.0 8 36.72809139796311 37.0 37.0 37.0 37.0 37.0 9 36.72470785853034 37.0 37.0 37.0 37.0 37.0 10-11 36.6964467098277 37.0 37.0 37.0 37.0 37.0 12-13 36.67588419745395 37.0 37.0 37.0 37.0 37.0 14-15 38.92057753905276 40.0 40.0 40.0 37.0 40.0 16-17 38.87741056498743 40.0 38.5 40.0 37.0 40.0 18-19 38.908438603634984 40.0 40.0 40.0 37.0 40.0 20-21 38.94274524474113 40.0 40.0 40.0 37.0 40.0 22-23 38.96580354940677 40.0 40.0 40.0 37.0 40.0 24-25 38.97242781982685 40.0 40.0 40.0 37.0 40.0 26-27 38.8810855217463 40.0 40.0 40.0 37.0 40.0 28-29 38.80868296393197 40.0 38.5 40.0 37.0 40.0 30-31 38.74195040003826 40.0 37.0 40.0 37.0 40.0 32-33 38.41248075127838 40.0 37.0 40.0 37.0 40.0 34-35 38.55430564167044 40.0 37.0 40.0 37.0 40.0 36-37 38.52553532432855 40.0 37.0 40.0 37.0 40.0 38-39 38.56259476757805 40.0 37.0 40.0 37.0 40.0 40-41 38.52577961506226 40.0 37.0 40.0 37.0 40.0 42-43 38.21218280640998 40.0 37.0 40.0 37.0 40.0 44-45 38.11815701094719 40.0 37.0 40.0 35.0 40.0 46-47 38.148118917132265 40.0 37.0 40.0 37.0 40.0 48-49 38.00815519918535 40.0 37.0 40.0 35.0 40.0 50-51 38.118921685697885 40.0 37.0 40.0 37.0 40.0 52-53 38.104129733109986 40.0 37.0 40.0 37.0 40.0 54-55 38.042838247264314 40.0 37.0 40.0 37.0 40.0 56-57 37.934664882888335 40.0 37.0 40.0 33.0 40.0 58-59 37.80554717685626 40.0 37.0 40.0 33.0 40.0 60-61 37.56218510393634 40.0 37.0 40.0 33.0 40.0 62-63 37.372718398215376 37.0 37.0 40.0 33.0 40.0 64-65 37.20600330656668 37.0 37.0 40.0 33.0 40.0 66-67 36.97454787282549 37.0 37.0 40.0 33.0 40.0 68-69 36.70879714454131 37.0 37.0 40.0 33.0 40.0 70-71 36.2537723153074 37.0 37.0 40.0 33.0 40.0 72-73 36.16186911116965 37.0 37.0 37.0 33.0 40.0 74-75 35.92778416950602 37.0 37.0 37.0 33.0 40.0 76-77 33.87996376201662 35.0 33.0 37.0 27.0 37.0 78-79 35.28601086847195 37.0 33.0 37.0 33.0 37.0 80-81 35.5973981073234 37.0 37.0 37.0 33.0 37.0 82-83 35.59947760431264 37.0 37.0 37.0 33.0 37.0 84-85 35.49757482397776 37.0 35.0 37.0 33.0 37.0 86-87 35.03678978520949 37.0 33.0 37.0 33.0 37.0 88-89 34.96628985088667 37.0 33.0 37.0 33.0 37.0 90-91 35.14825690086812 37.0 33.0 37.0 33.0 37.0 92-93 35.14325193393076 37.0 33.0 37.0 33.0 37.0 94-95 35.11824738368101 37.0 33.0 37.0 33.0 37.0 96-97 35.07902629309996 37.0 33.0 37.0 33.0 37.0 98-99 35.04426770376175 37.0 33.0 37.0 33.0 37.0 100 34.989100855404395 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 5.0 20 33.0 21 128.0 22 529.0 23 1727.0 24 4157.0 25 8861.0 26 15981.0 27 26491.0 28 40452.0 29 58344.0 30 80423.0 31 109054.0 32 147385.0 33 201078.0 34 289379.0 35 449683.0 36 893730.0 37 2480164.0 38 3342727.0 39 128277.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.085753778201145 19.974611676913355 14.55304870661243 23.38658583827307 2 14.763784592314966 20.603328409398245 41.772367797537 22.86051920074979 3 18.365198278487263 25.878220211237906 30.2056656656439 25.55091584463093 4 12.542701717974769 17.919149722691014 38.7054363675241 30.832712191810113 5 13.451256595627523 37.61709704078806 35.234558919731136 13.697087443853281 6 30.05207758936314 37.52547076447263 18.670866083903707 13.751585562260521 7 26.726325642387504 32.83947822635421 22.618449548710416 17.815746582547863 8 24.692578185538174 36.30949353931319 20.790727041221537 18.2072012339271 9 25.790141797975963 17.019392992228525 21.20602627808609 35.98443893170942 10-11 24.4346544208091 26.77966189730666 28.39097727649657 20.39470640538767 12-13 25.344004047056696 24.41582275476472 28.633318713324908 21.606854484853674 14-15 22.40175251663655 25.714241365910627 26.72526266187955 25.158743455573273 16-17 21.627739635970244 28.814321343114525 27.356316743549552 22.20162227736568 18-19 21.549749480860854 27.859722569335016 29.433332338802327 21.1571956110018 20-21 22.55761106522866 26.89957275565656 29.423683390065303 21.11913278904948 22-23 22.274931900139087 26.82743410379182 29.223059669654745 21.67457432641435 24-25 21.96296179712202 26.986151078365168 29.353286613812717 21.697600510700095 26-27 21.909580229942545 27.151651362235086 29.21470236349051 21.724066044331863 28-29 21.824121718410595 27.27380881493649 29.27804185891822 21.624027607734696 30-31 22.09746821127116 27.09257032186139 29.16703290033257 21.64292856653488 32-33 21.945854313495442 27.148428872456957 29.02021206933125 21.88550474471635 34-35 22.052372809347755 27.295517075584364 29.050915795808873 21.601194319259008 36-37 22.06213481431705 27.196877757237957 28.965796160731127 21.77519126771387 38-39 21.928378114809526 27.334799147711546 29.053694197145035 21.683128540333893 40-41 22.192653065760144 27.264634895823203 28.827223543872353 21.715488494544296 42-43 22.116237785682262 27.385948639181546 28.55125473804103 21.94655883709516 44-45 22.268335100391525 27.493846621604646 28.321535298843344 21.916282979160492 46-47 22.209076421036656 27.532670562343476 28.045325187827274 22.21292782879259 48-49 22.268505156787015 27.65686565847023 27.906918573054 22.167710611688758 50-51 22.216652349342368 27.776125751337982 27.759894162840386 22.24732773647926 52-53 22.315629497623103 27.738937562698062 27.608835034370323 22.33659790530851 54-55 22.351379391926386 27.647262076288758 27.68745116045655 22.313907371328305 56-57 22.335335269596133 27.744270023042134 27.645038140143235 22.275356567218495 58-59 22.266338455634187 27.845870943233603 27.676243555880596 22.211547045251613 60-61 22.462835390616743 27.727916005227442 27.6056490259506 22.20359957820521 62-63 22.407488059672378 27.790507974977146 27.51932717881945 22.282676786531027 64-65 22.318675052860563 27.773505500949426 27.546091458750254 22.361727987439753 66-67 22.395400927373363 27.81640169442097 27.39157113515695 22.39662624304872 68-69 22.31888572476256 27.80693646110035 27.458890192033625 22.415287622103463 70-71 22.311265267060367 27.57655614218629 27.466883639426833 22.64529495132651 72-73 22.41341527973085 27.64816180143383 27.423222724033796 22.515200194801526 74-75 22.29455203308282 27.756618101437724 27.417773898184418 22.53105596729504 76-77 22.456512744409256 27.70606310013328 27.2225611263959 22.614863029061564 78-79 22.42351078099848 27.70590127415541 27.21535269427462 22.655235250571494 80-81 22.387398458395776 27.75747531333601 27.29712112385946 22.558005104408753 82-83 22.416077717595766 27.739473914506828 27.396768475413296 22.44767989248411 84-85 22.633771639051297 27.732446499838247 27.241890616171755 22.3918912449387 86-87 22.482675093248 27.739212842917382 27.298531631591366 22.479580432243253 88-89 22.54201129412484 27.762887816878308 27.284993751711177 22.410107137285674 90-91 22.515732746790135 27.854133974896506 27.32242145930383 22.307711819009526 92-93 22.544701580599746 27.779739571162516 27.35869498305286 22.316863865184878 94-95 22.351428439430812 27.881947362040304 27.39516576371489 22.37145843481399 96-97 22.387124594936132 28.007683267761426 27.495667868412998 22.109524268889448 98-99 23.593245115716186 29.864340690053798 27.59698108609533 18.945433108134687 100 22.444549480944627 30.87049535427847 21.507116580154463 25.177838584622442 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2602.0 1 2265.5 2 2690.5 3 3716.5 4 5166.0 5 8342.0 6 10970.5 7 12867.5 8 14260.5 9 14300.5 10 13285.0 11 12243.0 12 13354.0 13 17747.0 14 27974.0 15 41415.0 16 52257.5 17 58635.0 18 59566.0 19 55909.0 20 49970.5 21 43524.5 22 39143.0 23 39420.0 24 44483.5 25 54069.5 26 67205.5 27 81770.0 28 96646.5 29 114566.5 30 132033.5 31 148035.5 32 166691.0 33 184022.5 34 201099.5 35 219145.5 36 238174.0 37 255969.5 38 267758.0 39 275913.0 40 286817.0 41 296636.0 42 303027.5 43 311297.0 44 319507.5 45 327691.0 46 333517.0 47 335079.5 48 334258.5 49 331350.0 50 326261.5 51 318979.5 52 308563.5 53 294067.5 54 279143.0 55 261636.0 56 241638.0 57 220828.5 58 198050.0 59 173622.5 60 145219.5 61 117085.0 62 92855.5 63 71798.5 64 53741.5 65 39895.5 66 30120.5 67 22939.0 68 17358.0 69 12624.0 70 9129.5 71 6721.5 72 4860.0 73 3301.0 74 2239.5 75 1520.5 76 976.0 77 605.0 78 396.0 79 260.5 80 181.0 81 127.0 82 93.0 83 70.5 84 45.5 85 28.0 86 21.0 87 14.5 88 7.0 89 3.0 90 3.0 91 3.0 92 3.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 9.180286205085904E-4 4 0.010134552797456673 5 0.011668626939622345 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.2079625995451778E-5 22-23 0.0 24-25 0.0062045293184853165 26-27 0.04559744161185657 28-29 0.07945767311339422 30-31 0.07184019805328075 32-33 0.03336134068431267 34-35 0.003247839532885257 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.889561022395859E-4 56-57 4.920565022576864E-4 58-59 1.3215485562379372E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 2.2153214957629209E-4 72-73 0.012752902908318008 74-75 0.027894880212811755 76-77 0.0023841381585356794 78-79 0.0 80-81 0.0 82-83 0.008058378801363512 84-85 0.044817239457988524 86-87 0.037396528050252155 88-89 0.009522507318882248 90-91 8.328704592659716E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 115.0 20-21 524.0 22-23 1136.0 24-25 2556.0 26-27 3630.0 28-29 6987.0 30-31 15910.0 32-33 20478.0 34-35 28826.0 36-37 40089.0 38-39 46840.0 40-41 51735.0 42-43 60747.0 44-45 74081.0 46-47 72754.0 48-49 63216.0 50-51 53233.0 52-53 49294.0 54-55 51952.0 56-57 54068.0 58-59 54072.0 60-61 53893.0 62-63 54677.0 64-65 57596.0 66-67 60708.0 68-69 61809.0 70-71 60128.0 72-73 57915.0 74-75 58732.0 76-77 58316.0 78-79 61811.0 80-81 63266.0 82-83 60365.0 84-85 61579.0 86-87 64865.0 88-89 69026.0 90-91 72488.0 92-93 77469.0 94-95 92857.0 96-97 268844.0 98-99 511968.0 100-101 5598054.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.73421664536576 #Duplication Level Percentage of deduplicated Percentage of total 1 88.71424437000842 74.28417757608206 2 7.782374156699571 13.033020073047554 3 1.9270867961040143 4.840893098381921 4 0.7483764153612957 2.5065885158457992 5 0.3314281439509918 1.3875938003981911 6 0.1694433970379708 0.8512926070022506 7 0.09928481628149033 0.5819475421276754 8 0.06171666189503651 0.4134237070198221 9 0.040732266573574184 0.3069615990355606 >10 0.12259556425858432 1.5251007818711084 >50 0.00214569179891667 0.11846103399354235 >100 4.530477564309881E-4 0.06518196805121027 >500 9.493819173236469E-5 0.0508770920787945 >1k 2.3734081936708005E-5 0.03448060506461041 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.831729581624159E-5 0.0 0.0 0.0 3 0.0 4.831729581624159E-5 0.0 0.0 0.0 4 0.0 1.449518874487248E-4 0.0 0.0 0.0 5 0.0 1.6911053535684556E-4 0.0 0.0 0.0 6 1.2079323954060398E-4 1.6911053535684556E-4 0.0 0.0 0.0 7 1.2079323954060398E-4 1.6911053535684556E-4 0.0 0.0 0.0 8 1.328725634946644E-4 2.1742783117308716E-4 0.0 0.0 2.4158647908120795E-5 9 1.328725634946644E-4 3.5030039466775155E-4 0.0 0.0 2.4158647908120795E-5 10-11 1.328725634946644E-4 3.5030039466775155E-4 0.0 0.0 2.4158647908120795E-5 12-13 1.328725634946644E-4 3.623797186218119E-4 0.0 0.0 2.4158647908120795E-5 14-15 1.5703121140278516E-4 4.7109363420835555E-4 0.0 0.0 4.22776338392114E-5 16-17 2.657451269893288E-4 4.831729581624159E-4 0.0 0.0 6.039661977030199E-5 18-19 2.657451269893288E-4 5.435695779327179E-4 0.0 0.0 6.039661977030199E-5 20-21 2.71784788966359E-4 6.039661977030199E-4 0.0 0.0 6.039661977030199E-5 22-23 2.8386411292041937E-4 6.402041695652012E-4 0.0 1.8118985931090596E-5 6.64362817473322E-5 24-25 2.899037748974496E-4 6.824818034044124E-4 0.0 9.059492965545298E-5 7.24759437243624E-5 26-27 3.0198309885150996E-4 6.885214653814427E-4 0.0 2.174278311730872E-4 7.24759437243624E-5 28-29 3.0198309885150996E-4 6.885214653814427E-4 0.0 7.247594372436239E-4 7.24759437243624E-5 30-31 3.0802276082854017E-4 7.609974091058051E-4 0.0 0.002458142424651291 7.24759437243624E-5 32-33 3.2614174675963076E-4 7.670370710828353E-4 0.0 0.005526290708982633 8.455526767842278E-5 34-35 3.623797186218119E-4 8.878303106234393E-4 0.0 0.009385634712304929 9.663459163248318E-5 36-37 3.623797186218119E-4 0.0010086235501640434 0.0 0.01601114390110706 9.663459163248318E-5 38-39 3.623797186218119E-4 0.0010388218600491943 0.0 0.03229407259118047 9.663459163248318E-5 40-41 3.865383665299327E-4 0.0011958530714519795 0.0 0.04886086539417431 1.0267425360951338E-4 42-43 3.865383665299327E-4 0.0012441703672682212 0.0 0.05882630765627414 1.0871391558654358E-4 44-45 3.9861769048399315E-4 0.0014072412406480363 0.0 0.07269337155553549 1.0871391558654358E-4 46-47 3.9861769048399315E-4 0.0015099154942575497 0.0 0.08810054925893951 1.0871391558654358E-4 48-49 4.0465735246102336E-4 0.0015099154942575497 0.0 0.10140592459433705 1.0871391558654358E-4 50-51 4.288160003691441E-4 0.0017092243394995464 0.0 0.11529110747952948 1.0871391558654358E-4 52-53 4.4089532432320454E-4 0.0017333829874076672 0.0 0.14938499933986493 1.2683290151763418E-4 54-55 4.4693498630023475E-4 0.0017696209592698484 0.0 0.19474286078736175 1.449518874487248E-4 56-57 4.4693498630023475E-4 0.0018602158889253013 0.0 0.2428729270823154 1.449518874487248E-4 58-59 4.5297464827726496E-4 0.0018722952128793617 0.0 0.28359836779343006 1.449518874487248E-4 60-61 5.012919440935066E-4 0.0018843745368334222 0.0 0.3184894950347335 1.449518874487248E-4 62-63 5.556489018867783E-4 0.0019568504805577845 0.0 0.34549282373403556 1.449518874487248E-4 64-65 5.556489018867783E-4 0.0021923972976619624 0.0 0.35049366385101655 1.449518874487248E-4 66-67 5.677282258408387E-4 0.0022286352695241435 0.0 0.355186481207169 1.449518874487248E-4 68-69 5.677282258408387E-4 0.0022950715512714756 0.0 0.3600242504507702 1.449518874487248E-4 70-71 5.918868737489595E-4 0.002307150875225536 0.0 0.3647351867928537 1.449518874487248E-4 72-73 6.402041695652011E-4 0.0023192301991795967 0.0 0.368582451472222 1.9326918326496636E-4 74-75 6.402041695652011E-4 0.002373587156972868 0.0 0.3711372284885057 1.9326918326496636E-4 76-77 6.402041695652011E-4 0.0024762614105823815 0.0 0.3735772519272259 1.9326918326496636E-4 78-79 6.402041695652011E-4 0.002524578706398623 0.0 0.3754072695062661 1.9326918326496636E-4 80-81 6.402041695652011E-4 0.002524578706398623 0.0 0.37604747367583125 2.1742783117308716E-4 82-83 6.462438315422312E-4 0.0025306183683756534 0.0 0.3763615360986369 2.5366580303526836E-4 84-85 6.522834935192615E-4 0.002578935664191895 0.0 0.37651252764806264 2.5970546501229857E-4 86-87 6.522834935192615E-4 0.002609133974077046 0.0 0.3765548052819018 2.657451269893288E-4 88 6.522834935192615E-4 0.0027178478896635896 0.0 0.37656084494387887 2.899037748974496E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13210 0.0 50.43013 1 GTATCAA 24250 0.0 38.44583 1 ATCAACG 29580 0.0 30.923346 3 TCAACGC 29705 0.0 30.83601 4 TATCAAC 30330 0.0 30.3285 2 CAACGCA 30320 0.0 30.207804 5 AACGCAG 30730 0.0 29.870275 6 ACGCAGA 35220 0.0 26.086649 7 CGCAGAG 35595 0.0 25.775654 8 GTGGTAT 6175 0.0 24.12091 1 GCAGAGT 40425 0.0 22.66412 9 TGGTATC 6340 0.0 22.61301 2 GTACATG 28180 0.0 21.599138 1 TACATGG 27510 0.0 21.516659 2 GAGTACT 24860 0.0 20.688448 12-13 ACATGGG 28075 0.0 20.334478 3 CAGAGTA 39600 0.0 19.673971 10-11 AGAGTAC 37185 0.0 19.128317 10-11 GTACTTT 27780 0.0 18.452732 14-15 CATGGGG 20425 0.0 17.988916 4 >>END_MODULE