##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138654_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8496649 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.770468451739035 33.0 33.0 33.0 33.0 33.0 2 32.7668420809192 33.0 33.0 33.0 33.0 33.0 3 32.76364293735095 33.0 33.0 33.0 33.0 33.0 4 36.70736369126229 37.0 37.0 37.0 37.0 37.0 5 36.72396529502396 37.0 37.0 37.0 37.0 37.0 6 36.73189995255777 37.0 37.0 37.0 37.0 37.0 7 36.71932122887505 37.0 37.0 37.0 37.0 37.0 8 36.7106239177351 37.0 37.0 37.0 37.0 37.0 9 36.707852942966106 37.0 37.0 37.0 37.0 37.0 10-11 36.67802630189855 37.0 37.0 37.0 37.0 37.0 12-13 36.65655295399398 37.0 37.0 37.0 37.0 37.0 14-15 38.87777346104329 40.0 38.5 40.0 37.0 40.0 16-17 38.82849621068259 40.0 37.0 40.0 37.0 40.0 18-19 38.85759633003552 40.0 38.5 40.0 37.0 40.0 20-21 38.893294322569275 40.0 40.0 40.0 37.0 40.0 22-23 38.92152594961491 40.0 40.0 40.0 37.0 40.0 24-25 38.93052757228052 40.0 40.0 40.0 37.0 40.0 26-27 38.83565815499577 40.0 40.0 40.0 37.0 40.0 28-29 38.76232207997717 40.0 37.0 40.0 37.0 40.0 30-31 38.6976553707462 40.0 37.0 40.0 37.0 40.0 32-33 38.378179268330356 40.0 37.0 40.0 37.0 40.0 34-35 38.51478813185334 40.0 37.0 40.0 37.0 40.0 36-37 38.483654470283525 40.0 37.0 40.0 37.0 40.0 38-39 38.514258158635464 40.0 37.0 40.0 37.0 40.0 40-41 38.47937853031378 40.0 37.0 40.0 37.0 40.0 42-43 38.17891136440306 40.0 37.0 40.0 37.0 40.0 44-45 38.08041735089439 40.0 37.0 40.0 35.0 40.0 46-47 38.106029631431085 40.0 37.0 40.0 35.0 40.0 48-49 37.973053198179166 40.0 37.0 40.0 33.0 40.0 50-51 38.076085830760526 40.0 37.0 40.0 37.0 40.0 52-53 38.06354313019075 40.0 37.0 40.0 37.0 40.0 54-55 38.00741428859839 40.0 37.0 40.0 33.0 40.0 56-57 37.8983354265764 40.0 37.0 40.0 33.0 40.0 58-59 37.77257090083434 40.0 37.0 40.0 33.0 40.0 60-61 37.53333672235945 40.0 37.0 40.0 33.0 40.0 62-63 37.34553199842628 37.0 37.0 40.0 33.0 40.0 64-65 37.175105263188286 37.0 37.0 40.0 33.0 40.0 66-67 36.937102467561616 37.0 37.0 40.0 33.0 40.0 68-69 36.66344169799631 37.0 37.0 40.0 33.0 40.0 70-71 36.20861521870262 37.0 37.0 40.0 33.0 40.0 72-73 36.099804719735985 37.0 37.0 37.0 33.0 40.0 74-75 35.86179461321265 37.0 37.0 37.0 33.0 40.0 76-77 33.81808876682909 35.0 33.0 37.0 27.0 37.0 78-79 35.23772370993743 37.0 33.0 37.0 33.0 37.0 80-81 35.55032541360397 37.0 35.0 37.0 33.0 37.0 82-83 35.549682812261864 37.0 37.0 37.0 33.0 37.0 84-85 35.442456705080374 37.0 33.0 37.0 33.0 37.0 86-87 35.0051015628686 37.0 33.0 37.0 33.0 37.0 88-89 34.92631964655799 37.0 33.0 37.0 33.0 37.0 90-91 35.08844845667699 37.0 33.0 37.0 33.0 37.0 92-93 35.079300112021244 37.0 33.0 37.0 33.0 37.0 94-95 35.04933295627881 37.0 33.0 37.0 33.0 37.0 96-97 35.0079914423394 37.0 33.0 37.0 33.0 37.0 98-99 34.97615798741754 37.0 33.0 37.0 33.0 37.0 100 34.91742658219943 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 32.0 21 147.0 22 611.0 23 1927.0 24 4716.0 25 9722.0 26 17840.0 27 29691.0 28 44748.0 29 63689.0 30 87878.0 31 118347.0 32 157964.0 33 216174.0 34 305781.0 35 470380.0 36 915839.0 37 2515177.0 38 3406850.0 39 129132.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.142802415399295 20.00625187647507 14.494608403854272 23.356337304271367 2 14.713741852817504 20.868968460389503 41.819557333720624 22.59773235307237 3 18.273532401559173 25.997325267629183 30.426416554199463 25.302725776612178 4 12.364927495802295 18.089695805473703 38.9325795415689 30.612797157155107 5 13.319817551064078 37.71624790615822 35.34927534918354 13.614659193594159 6 29.740042221351032 37.88644205497956 18.761643560890885 13.611872162778527 7 26.431643816285693 32.985027391386886 22.732079435080816 17.851249357246605 8 24.509309493660382 36.45658423691505 21.00288007660432 18.031226192820252 9 25.636636278608187 16.92215366316768 21.221495674353502 36.219714383870624 10-11 24.114612713788695 26.936725290170276 28.643480506256054 20.305181489784975 12-13 25.16189617812858 24.523150244290427 28.80028938467389 21.51466419290711 14-15 22.234347917631997 25.889435941157508 26.816707386641486 25.05950875456901 16-17 21.45601165824315 29.042614329484483 27.46590449952681 22.035469512745554 18-19 21.43083114296001 27.967037357904275 29.559447495124253 21.042684004011463 20-21 22.443228562369313 27.0704853021937 29.473156868796075 21.013129266640913 22-23 22.06969314211788 27.041910450122337 29.337621120754747 21.55077528700503 24-25 21.792447848584686 27.208086500362892 29.44895537047183 21.550510280580585 26-27 21.68828580516212 27.381904585785087 29.356455775816144 21.57335383323665 28-29 21.56404530477366 27.506341681216117 29.402345008332237 21.527268005677985 30-31 22.010102094175625 27.25747777762429 29.273811476140498 21.45860865205959 32-33 21.7942431187248 27.37608612296943 29.13048474688886 21.699186011416906 34-35 21.854604866705987 27.48874811588981 29.18596240212085 21.47068461528335 36-37 21.882544669983815 27.438226258451024 29.123433160330837 21.555795911234327 38-39 21.65015469365758 27.55783401696556 29.209921445810462 21.5820898435664 40-41 21.947832551817708 27.451526049081547 29.008873912600784 21.59176748649995 42-43 21.98966390555819 27.50829366844605 28.72558405096938 21.77645837502638 44-45 22.062884607961173 27.679354532475838 28.51843466245957 21.739326197103416 46-47 22.090276439397307 27.666504825582255 28.217604603699364 22.025614131321067 48-49 22.05723045445917 27.792382426585483 28.140990534529315 22.00939658442603 50-51 21.97917478302615 27.964542714881404 28.029829663272665 22.026452838819782 52-53 22.145552011599325 27.885957709538694 27.912248494732356 22.056241784129625 54-55 22.17903569675775 27.76588174498692 27.950593918722568 22.10448863953276 56-57 22.124196369436238 27.914940374095586 27.88172527923283 22.079137977235348 58-59 22.01854673729999 27.965252643743348 27.942263009426462 22.0739376095302 60-61 22.220309638174097 27.91552215323325 27.868815332280278 21.99535287631237 62-63 22.08494294054175 28.021753021074453 27.8228306804454 22.070473357938397 64-65 22.07046269044024 28.007795715831215 27.785347880614907 22.13639371311364 66-67 22.156570342362336 28.06754401330473 27.6075597717096 22.168325872623335 68-69 22.15350061077667 28.035589613424648 27.66964753625198 22.141262239546705 70-71 22.14845691239407 27.771471725189667 27.684050326544835 22.396021035871428 72-73 22.152676809274 27.81255579688574 27.696853462060577 22.337913931779678 74-75 22.043500969100087 27.976635817806976 27.60166735901219 22.378195854080744 76-77 22.24576632969269 27.880826246846986 27.476079854738888 22.397327568721437 78-79 22.287106948895982 27.991199235706894 27.362726182168796 22.35896763322833 80-81 22.185750925879972 27.96856063812281 27.454264060170676 22.391424375826542 82-83 22.24178698461305 27.968176869250993 27.559560633371195 22.230475512764762 84-85 22.3809125380828 27.927998060925578 27.473599375263806 22.217490025727816 86-87 22.223921754038678 27.969915530851182 27.523625244966475 22.282537470143662 88-89 22.320321765917697 28.01145687887821 27.458429028153493 22.2097923270506 90-91 22.30209431839672 28.017488978974576 27.54840342954742 22.132013273081288 92-93 22.29042892147515 27.981308542608645 27.51138228272033 22.21688025319587 94-95 22.15882626833142 28.110350845811656 27.525745343817658 22.205077542039266 96-97 22.215234958965834 28.17484844040587 27.68935089727963 21.920565703348668 98-99 23.28388933018378 30.0870098381223 27.88655106730652 18.742549764387405 100 22.25935891840637 31.107207309981 21.80098498589015 24.832448785722484 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2540.0 1 2230.5 2 2733.0 3 3803.0 4 5164.5 5 8267.0 6 10901.5 7 12824.0 8 14288.0 9 14585.0 10 14000.0 11 13169.5 12 14221.0 13 18503.5 14 28620.0 15 42100.0 16 52975.0 17 59316.0 18 60469.5 19 56944.0 20 51032.5 21 44570.0 22 40213.0 23 40720.5 24 46150.5 25 56456.5 26 70827.0 27 86914.5 28 103174.5 29 120780.0 30 137880.5 31 155136.0 32 174629.5 33 194236.5 34 214838.5 35 234077.0 36 254473.0 37 273743.5 38 284498.0 39 292729.0 40 305742.0 41 317787.0 42 325632.5 43 333469.5 44 339852.0 45 346098.5 46 350228.0 47 351137.0 48 349184.5 49 343414.5 50 335822.5 51 324251.5 52 308397.0 53 292079.5 54 274257.0 55 254397.0 56 233581.0 57 210727.0 58 188168.0 59 165200.0 60 139003.5 61 113196.5 62 89473.5 63 68732.0 64 52088.5 65 39218.0 66 29953.0 67 23196.5 68 17717.5 69 12385.5 70 8574.0 71 6211.0 72 4353.5 73 3048.0 74 2089.5 75 1406.0 76 956.5 77 600.5 78 378.0 79 249.0 80 162.5 81 103.5 82 70.0 83 54.0 84 42.0 85 32.0 86 26.0 87 20.0 88 13.5 89 7.0 90 2.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0011533958858368752 4 0.010992568952771852 5 0.01061594988800879 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 2.3539270565083727E-5 22-23 0.0 24-25 0.006139602674111891 26-27 0.046624996238732466 28-29 0.08182542820628798 30-31 0.07448051814750328 32-33 0.03447529266750552 34-35 0.003184310186205058 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.846481608883996E-4 56-57 4.6167486278478044E-4 58-59 1.2919152203891095E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 1.7612959019115346E-4 72-73 0.013256299730332306 74-75 0.030065290630569043 76-77 0.002554415647572826 78-79 0.0 80-81 0.0 82-83 0.007727958757629134 84-85 0.04624870017586289 86-87 0.03888070546984755 88-89 0.009464271715507946 90-91 7.395787256037939E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 125.0 20-21 532.0 22-23 1212.0 24-25 2774.0 26-27 4048.0 28-29 7722.0 30-31 18298.0 32-33 22826.0 34-35 31596.0 36-37 44283.0 38-39 50918.0 40-41 55027.0 42-43 64856.0 44-45 78459.0 46-47 76349.0 48-49 65599.0 50-51 55627.0 52-53 50506.0 54-55 53826.0 56-57 57481.0 58-59 56549.0 60-61 57440.0 62-63 57560.0 64-65 59827.0 66-67 63619.0 68-69 63166.0 70-71 60826.0 72-73 58298.0 74-75 59822.0 76-77 57930.0 78-79 61175.0 80-81 63129.0 82-83 60768.0 84-85 61968.0 86-87 64620.0 88-89 69125.0 90-91 73633.0 92-93 78047.0 94-95 95224.0 96-97 273936.0 98-99 525049.0 100-101 5732874.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.41497662211911 #Duplication Level Percentage of deduplicated Percentage of total 1 90.41599338146756 78.13295954325197 2 6.867771060267761 11.869565512382094 3 1.5727004703968928 4.077146231488296 4 0.5529705224272286 1.9113973907307977 5 0.23887187302379767 1.032105366151664 6 0.12493884669925011 0.6477952510026133 7 0.06786886962874632 0.4105420747636434 8 0.042027359238281804 0.2905434612852419 9 0.026585436543752214 0.20676418896754611 >10 0.08768825948807829 1.1323985934004104 >50 0.0018862247583091682 0.10623664879704196 >100 5.751429322494646E-4 0.08440893752893894 >500 1.0212816651195546E-4 0.05715297601387623 >1k 2.042496157380579E-5 0.04098382423580628 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1769345773845666E-5 2 0.0 0.0 0.0 1.1769345773845666E-5 1.1769345773845666E-5 3 0.0 0.0 0.0 2.3538691547691332E-5 1.1769345773845666E-5 4 0.0 1.1769345773845666E-5 0.0 3.5308037321536996E-5 1.1769345773845666E-5 5 0.0 1.1769345773845666E-5 0.0 4.7077383095382664E-5 1.1769345773845666E-5 6 4.7077383095382664E-5 2.3538691547691332E-5 0.0 5.8846728869228324E-5 1.1769345773845666E-5 7 4.7077383095382664E-5 3.5308037321536996E-5 0.0 5.8846728869228324E-5 1.1769345773845666E-5 8 4.7077383095382664E-5 4.7077383095382664E-5 0.0 5.8846728869228324E-5 2.3538691547691332E-5 9 4.7077383095382664E-5 1.2946280351230232E-4 0.0 8.238542041691965E-5 2.3538691547691332E-5 10-11 4.7077383095382664E-5 1.2946280351230232E-4 0.0 1.1180878485153383E-4 2.3538691547691332E-5 12-13 4.7077383095382664E-5 1.2946280351230232E-4 0.0 1.3534747639922515E-4 2.3538691547691332E-5 14-15 4.7077383095382664E-5 2.2361756970306764E-4 0.0 2.0007887815537631E-4 2.3538691547691332E-5 16-17 4.7077383095382664E-5 2.353869154769133E-4 0.0 2.1184822392922198E-4 3.5308037321536996E-5 18-19 4.7077383095382664E-5 2.5892560702460465E-4 0.0 2.47156261250759E-4 3.5308037321536996E-5 20-21 4.7077383095382664E-5 2.8246429857229597E-4 0.0 2.5892560702460465E-4 3.5308037321536996E-5 22-23 4.7077383095382664E-5 3.0011831723306446E-4 0.0 2.7657962568537314E-4 4.1192710208459826E-5 24-25 4.7077383095382664E-5 3.354263545546015E-4 0.0 3.295416816676786E-4 4.7077383095382664E-5 26-27 4.7077383095382664E-5 3.413110274415243E-4 0.0 4.825431767276723E-4 4.7077383095382664E-5 28-29 4.7077383095382664E-5 3.413110274415243E-4 0.0 0.0010474717738722644 5.2962055982305494E-5 30-31 4.7077383095382664E-5 3.8250373764998414E-4 0.0 0.002877605041705265 5.8846728869228324E-5 32-33 4.7077383095382664E-5 4.0015775631075263E-4 0.0 0.006402524100972042 5.8846728869228324E-5 34-35 4.7077383095382664E-5 5.119665411622864E-4 0.0 0.010986684279884928 5.8846728869228324E-5 36-37 4.7077383095382664E-5 6.002366344661289E-4 0.0 0.01794825230511464 5.8846728869228324E-5 38-39 4.7077383095382664E-5 6.355446717876659E-4 0.0 0.03582000386269928 5.8846728869228324E-5 40-41 4.7077383095382664E-5 7.179300922045856E-4 0.0 0.05464507242796543 5.8846728869228324E-5 42-43 4.7077383095382664E-5 7.41468783752277E-4 0.0 0.06582006624023187 5.8846728869228324E-5 44-45 4.7077383095382664E-5 8.415082228299651E-4 0.0 0.08071417331703357 5.8846728869228324E-5 46-47 4.7077383095382664E-5 9.180089703599619E-4 0.0 0.09620851702830138 5.8846728869228324E-5 48-49 4.7077383095382664E-5 9.180089703599619E-4 0.0 0.11064950429281002 5.8846728869228324E-5 50-51 4.7077383095382664E-5 9.474323347945761E-4 0.0 0.1246138330534779 5.8846728869228324E-5 52-53 4.7077383095382664E-5 9.53317007681499E-4 0.0 0.1652769227021147 5.8846728869228324E-5 54-55 4.7077383095382664E-5 9.709710263422675E-4 0.0 0.21775643550769253 5.8846728869228324E-5 56-57 5.8846728869228324E-5 9.88625045003036E-4 0.0 0.27201900419800795 5.8846728869228324E-5 58-59 5.8846728869228324E-5 0.0010062790636638044 0.0 0.3122701667445601 5.8846728869228324E-5 60-61 5.8846728869228324E-5 0.0010415871009853413 0.0 0.3389630429596421 5.8846728869228324E-5 62-63 7.061607464307399E-5 0.0010651257925330328 0.0 0.35789992030975976 7.061607464307399E-5 64-65 7.061607464307399E-5 0.001235781306253795 0.0 0.362607658619298 7.061607464307399E-5 66-67 7.061607464307399E-5 0.001235781306253795 0.0 0.3670388173031509 7.061607464307399E-5 68-69 7.061607464307399E-5 0.0012475506520276405 0.0 0.3717406709398023 7.061607464307399E-5 70-71 7.650074752999682E-5 0.0012475506520276405 0.0 0.37562455504517134 7.061607464307399E-5 72-73 8.238542041691965E-5 0.0012475506520276405 0.0 0.37895527989916966 8.238542041691965E-5 74-75 8.238542041691965E-5 0.0012475506520276405 0.0 0.38149745858632034 8.238542041691965E-5 76-77 8.827009330384248E-5 0.0012652046706884091 0.0 0.3841985234414179 8.238542041691965E-5 78-79 9.415476619076533E-5 0.0013063973808968689 0.0 0.38565203764448786 8.238542041691965E-5 80-81 9.415476619076533E-5 0.0013181667266707144 0.0 0.3861463501669894 8.827009330384248E-5 82-83 9.415476619076533E-5 0.0013358207453314829 0.0 0.38638762175535324 9.415476619076533E-5 84-85 9.415476619076533E-5 0.0013417054182184058 0.0 0.3865170845588655 9.415476619076533E-5 86-87 1.0003943907768816E-4 0.0013534747639922515 0.0 0.38656416194196086 9.415476619076533E-5 88 1.0592411196461099E-4 0.0014005521470876342 0.0 0.3865759312877347 9.415476619076533E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13070 0.0 52.272 1 GTATCAA 24510 0.0 39.387745 1 TCAACGC 29785 0.0 31.66258 4 ATCAACG 29900 0.0 31.584576 3 TATCAAC 30655 0.0 31.100477 2 CAACGCA 30535 0.0 30.896025 5 AACGCAG 31350 0.0 30.158377 6 ACGCAGA 35930 0.0 26.278284 7 CGCAGAG 36135 0.0 26.14107 8 GTGGTAT 6110 0.0 24.005669 1 TGGTATC 5885 0.0 22.664328 2 GCAGAGT 41680 0.0 22.560452 9 TACATGG 29030 0.0 20.889656 2 GTACATG 29490 0.0 20.85467 1 GAGTACT 25210 0.0 20.682241 12-13 ACATGGG 29575 0.0 19.997166 3 CAGAGTA 40425 0.0 19.882563 10-11 AGAGTAC 37895 0.0 19.48445 10-11 GTACTTT 27620 0.0 18.777191 14-15 AGTACTT 26700 0.0 18.35574 12-13 >>END_MODULE