##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138649_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8100872 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.76197969798807 33.0 33.0 33.0 33.0 33.0 2 32.76276516898428 33.0 33.0 33.0 33.0 33.0 3 32.75984511297055 33.0 33.0 33.0 33.0 33.0 4 36.70170816178801 37.0 37.0 37.0 37.0 37.0 5 36.71946550939207 37.0 37.0 37.0 37.0 37.0 6 36.72774474155375 37.0 37.0 37.0 37.0 37.0 7 36.714357046994444 37.0 37.0 37.0 37.0 37.0 8 36.706385806367514 37.0 37.0 37.0 37.0 37.0 9 36.70465562225894 37.0 37.0 37.0 37.0 37.0 10-11 36.676079377627495 37.0 37.0 37.0 37.0 37.0 12-13 36.65369320734854 37.0 37.0 37.0 37.0 37.0 14-15 38.85340374468329 40.0 37.0 40.0 37.0 40.0 16-17 38.800077942226466 40.0 37.0 40.0 37.0 40.0 18-19 38.83599031067273 40.0 38.5 40.0 37.0 40.0 20-21 38.87658683835919 40.0 40.0 40.0 37.0 40.0 22-23 38.904872808811646 40.0 40.0 40.0 37.0 40.0 24-25 38.91406289158529 40.0 40.0 40.0 37.0 40.0 26-27 38.81658065280487 40.0 37.0 40.0 37.0 40.0 28-29 38.73920665108589 40.0 37.0 40.0 37.0 40.0 30-31 38.67024894161561 40.0 37.0 40.0 37.0 40.0 32-33 38.35308117293762 40.0 37.0 40.0 37.0 40.0 34-35 38.48229136536713 40.0 37.0 40.0 37.0 40.0 36-37 38.45905629516482 40.0 37.0 40.0 37.0 40.0 38-39 38.476102786598375 40.0 37.0 40.0 37.0 40.0 40-41 38.45846332858765 40.0 37.0 40.0 37.0 40.0 42-43 38.170175711307465 40.0 37.0 40.0 37.0 40.0 44-45 38.07350745082617 40.0 37.0 40.0 35.0 40.0 46-47 38.10515610099097 40.0 37.0 40.0 35.0 40.0 48-49 37.97583237970327 40.0 37.0 40.0 33.0 40.0 50-51 38.07552091549721 40.0 37.0 40.0 37.0 40.0 52-53 38.07780980812241 40.0 37.0 40.0 37.0 40.0 54-55 38.02646162371265 40.0 37.0 40.0 37.0 40.0 56-57 37.9224684085735 40.0 37.0 40.0 33.0 40.0 58-59 37.80281462314883 40.0 37.0 40.0 33.0 40.0 60-61 37.57543882726088 40.0 37.0 40.0 33.0 40.0 62-63 37.393269410781 37.0 37.0 40.0 33.0 40.0 64-65 37.22670390245659 37.0 37.0 40.0 33.0 40.0 66-67 36.996121479267266 37.0 37.0 40.0 33.0 40.0 68-69 36.71749955641063 37.0 37.0 40.0 33.0 40.0 70-71 36.27803592834158 37.0 37.0 40.0 33.0 40.0 72-73 36.1639493098728 37.0 37.0 37.0 33.0 40.0 74-75 35.930847691946525 37.0 37.0 37.0 33.0 40.0 76-77 33.89165301015998 35.0 33.0 37.0 27.0 37.0 78-79 35.30990299651417 37.0 33.0 37.0 33.0 37.0 80-81 35.61278737370182 37.0 37.0 37.0 33.0 37.0 82-83 35.59937104144285 37.0 37.0 37.0 33.0 37.0 84-85 35.485253764495006 37.0 35.0 37.0 33.0 37.0 86-87 35.05617867026598 37.0 33.0 37.0 33.0 37.0 88-89 34.97123049736028 37.0 33.0 37.0 33.0 37.0 90-91 35.120579830015444 37.0 33.0 37.0 33.0 37.0 92-93 35.10472955856304 37.0 33.0 37.0 33.0 37.0 94-95 35.067138563039435 37.0 33.0 37.0 33.0 37.0 96-97 35.02367145107172 37.0 33.0 37.0 33.0 37.0 98-99 34.990574285662824 37.0 33.0 37.0 33.0 37.0 100 34.92880567527394 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 27.0 21 135.0 22 584.0 23 1714.0 24 4231.0 25 9067.0 26 16604.0 27 27306.0 28 41886.0 29 60366.0 30 81136.0 31 110365.0 32 148416.0 33 203360.0 34 290111.0 35 446574.0 36 870496.0 37 2411971.0 38 3251152.0 39 125367.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.38849496696158 20.612126694508937 14.870954633032099 23.128423705497383 2 14.394919460522274 20.749716820608942 42.65962972875019 22.195733990118594 3 17.974740735162868 26.489613975920868 30.871544627128962 24.66410066178731 4 11.97891454447295 18.2974400835754 39.70795770019991 30.015687671751735 5 12.80521017798536 38.16525991630609 35.837084777367686 13.192445128340868 6 28.948402097946985 38.70685773087144 18.762399899665123 13.582340271516449 7 25.752869567621854 33.474507435742716 22.968206385682922 17.8044166109525 8 24.13450058215955 36.735810663345866 21.11764017503301 18.01204857946157 9 25.157254675792927 17.272313400335175 21.54500157513907 36.025430348732826 10-11 23.87694806188766 27.34948163605103 28.730493457988228 20.04307684407308 12-13 24.9054484504878 24.697693038477833 28.84966581375437 21.547192697279996 14-15 21.97403563468229 26.17437974578539 27.134838076691004 24.716746542841314 16-17 21.09190837727099 29.33650846476774 27.741772737552207 21.829810420409064 18-19 20.894324709734953 28.15469742022834 29.974254623452882 20.976723246583827 20-21 22.252452101391178 27.3885174191629 29.781037576359093 20.57799290308683 22-23 21.635862699354192 27.37372274614625 29.661079199954866 21.329335354544696 24-25 21.304831604717286 27.47070218683081 30.089242473747234 21.13522373470467 26-27 21.359229899306236 27.736431648645386 29.80746370536447 21.09687474668391 28-29 21.07702489290366 27.83913676335979 29.993684973688005 21.090153370048544 30-31 21.656522136123968 27.61525997390743 29.75868243363496 20.969535456333638 32-33 21.51758590686858 27.629415884883407 29.561353119989842 21.29164508825817 34-35 21.284785938424662 27.983043409071694 29.826834902305965 20.905335750197676 36-37 21.54291567481498 27.65739229821535 29.645512108136803 21.15417991883287 38-39 21.180592031155967 27.868325122008926 29.73723134347559 21.21385150335952 40-41 21.54728827247761 27.81244926339047 29.563809928086076 21.076452536045846 42-43 21.67116060681707 27.779317275142667 29.28097487601781 21.268547242022446 44-45 21.65076738566182 28.229092094171794 28.88270246646913 21.237438053697268 46-47 21.739109579286847 27.806251181770325 28.523017369406638 21.931621869536187 48-49 21.743767888584614 27.919030511938903 28.664613333635288 21.6725882658412 50-51 21.453413075388898 28.276158291812653 28.501611734719706 21.76881689807874 52-53 21.671109144114002 28.28419124557883 28.41379185613993 21.630907754167236 54-55 21.799746641940505 28.116587851528614 28.3022953296914 21.781370176839477 56-57 21.91533350187201 28.44650894563385 27.962262019629307 21.67589553286484 58-59 21.621323229495985 28.638425181846376 28.381304002654627 21.35894758600301 60-61 21.87576337540273 28.699951879633495 27.911950798558134 21.51233394640564 62-63 21.684338642116934 28.6897881929497 27.923700461576857 21.702172703356506 64-65 21.590903443372646 28.69837228200059 28.016553320663295 21.694170953963464 66-67 21.885312370730887 28.65856865319219 27.717941895733066 21.738177080343856 68-69 21.928180129917802 28.41473981816305 27.998340083555505 21.658739968363644 70-71 21.8459685937955 27.93997482212742 28.083327605850016 22.13072897822706 72-73 21.88415037730379 28.10819300377627 28.179344687901747 21.828311931018188 74-75 21.67282139186154 28.35423359394238 28.01659792772224 21.956347086473833 76-77 21.71142285606337 28.371716114187524 27.86326302990511 22.05359799984399 78-79 21.934968458411873 28.426426457786786 27.739262172248324 21.899342911553017 80-81 21.759906992469116 28.267497550006045 27.906219916276658 22.066375541248185 82-83 21.98537387134706 28.214791479663454 28.03161893297962 21.768215716009866 84-85 22.287888550079803 28.126196942489806 27.796007763594467 21.789906743835925 86-87 21.712565595496653 28.347513808344573 27.908814443170822 22.03110615298796 88-89 21.999596657027077 28.26785479371245 27.90660692849944 21.825941620761036 90-91 21.984967100303134 28.308817770630405 28.016259112939935 21.689956016126523 92-93 21.97463640955582 28.306441808360976 27.900981966925638 21.817939815157565 94-95 21.76737108688462 28.460638615241933 27.859719637078207 21.912270660795237 96-97 21.730301825656976 28.602294897999354 28.136033103943664 21.531370172400006 98-99 22.808987791930782 30.492576429652395 28.270959537240227 18.427476241176596 100 21.94500257695382 31.682732168600005 22.037436789937182 24.334828464509 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2779.0 1 2343.0 2 2716.0 3 3781.0 4 5388.5 5 9035.0 6 11935.5 7 13586.5 8 14373.0 9 13714.5 10 12565.5 11 11757.0 12 13431.0 13 18937.5 14 30732.5 15 46207.0 16 58609.5 17 65808.0 18 67330.0 19 63699.0 20 57082.5 21 49709.0 22 44920.0 23 45457.5 24 50352.0 25 60667.5 26 78444.5 27 98641.0 28 112298.0 29 125767.5 30 138795.5 31 150079.5 32 168793.0 33 190999.0 34 215589.0 35 238803.5 36 264107.0 37 286377.5 38 290502.0 39 293050.0 40 306526.5 41 315392.0 42 317386.0 43 322368.5 44 326853.5 45 331054.0 46 338124.0 47 346405.0 48 344889.5 49 337002.0 50 326855.5 51 306828.0 52 284109.0 53 263399.0 54 242594.5 55 220509.0 56 200240.0 57 181528.5 58 161946.0 59 143018.0 60 119848.0 61 92265.5 62 67441.0 63 48228.0 64 34295.5 65 23794.5 66 16599.5 67 12057.5 68 8944.5 69 6564.5 70 4834.0 71 3527.5 72 2495.0 73 1649.0 74 1079.5 75 665.5 76 419.5 77 266.5 78 178.5 79 126.5 80 92.0 81 66.0 82 52.0 83 37.0 84 25.0 85 18.0 86 13.5 87 11.5 88 7.5 89 3.0 90 1.0 91 0.0 92 0.5 93 2.0 94 2.5 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0010122367073569364 4 0.010875372429042206 5 0.010863028078952489 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.8516903433052415E-5 22-23 0.0 24-25 0.0056304345732389885 26-27 0.04651437388021524 28-29 0.08256141316074155 30-31 0.07512601933543939 32-33 0.03422230539325805 34-35 0.002890456365763943 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.4738667020216024E-4 56-57 3.6482049480468596E-4 58-59 1.3630255732902599E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 1.8010921390469067E-4 72-73 0.012099409621479599 74-75 0.02786462366158011 76-77 0.0024768433629470147 78-79 0.0 80-81 0.0 82-83 0.0073668073252977605 84-85 0.044760476974517065 86-87 0.03761344547448517 88-89 0.009617012832178196 90-91 6.328838539462287E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 85.0 20-21 463.0 22-23 1089.0 24-25 2064.0 26-27 3585.0 28-29 6856.0 30-31 15719.0 32-33 20871.0 34-35 29008.0 36-37 40984.0 38-39 49832.0 40-41 53825.0 42-43 64731.0 44-45 78295.0 46-47 77166.0 48-49 65749.0 50-51 57355.0 52-53 55267.0 54-55 60516.0 56-57 64876.0 58-59 63678.0 60-61 65091.0 62-63 64722.0 64-65 66429.0 66-67 72392.0 68-69 64462.0 70-71 60790.0 72-73 58217.0 74-75 59691.0 76-77 58501.0 78-79 62146.0 80-81 64484.0 82-83 60176.0 84-85 60829.0 86-87 64237.0 88-89 68324.0 90-91 72811.0 92-93 76423.0 94-95 92138.0 96-97 252184.0 98-99 489651.0 100-101 5355160.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.52510259701198 #Duplication Level Percentage of deduplicated Percentage of total 1 88.84733871851218 73.32135743216692 2 7.448524510556139 12.293804988600074 3 2.0027704906153234 4.958365206488928 4 0.7650435081586541 2.525411760078836 5 0.3640670016272526 1.5022333330737774 6 0.1991094410679772 0.9858916231301118 7 0.10939884213027966 0.6319705469556952 8 0.07237571338229987 0.47782505379249834 9 0.04643169128996725 0.34486020787116006 >10 0.13930733716584673 1.7136750441804973 >50 0.0027917400151876706 0.16145898260200117 >100 0.0022110229605516057 0.35544666779976963 >500 3.674900499850542E-4 0.2151494158936192 >1k 2.3624322154797806E-4 0.3773991599845257 >5k 2.624924683864412E-5 0.13515057738160755 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.2344350089718736E-5 0.0 5 0.0 0.0 0.0 1.2344350089718736E-5 0.0 6 0.0 0.0 0.0 1.2344350089718736E-5 0.0 7 0.0 0.0 0.0 1.2344350089718736E-5 0.0 8 0.0 0.0 0.0 1.2344350089718736E-5 0.0 9 0.0 0.0 0.0 2.4688700179437472E-5 0.0 10-11 0.0 0.0 0.0 2.4688700179437472E-5 0.0 12-13 0.0 1.2344350089718736E-5 0.0 2.4688700179437472E-5 0.0 14-15 0.0 4.9377400358874943E-5 0.0 2.4688700179437472E-5 0.0 16-17 0.0 7.406610053831242E-5 0.0 2.4688700179437472E-5 0.0 18-19 0.0 7.406610053831242E-5 0.0 7.406610053831242E-5 0.0 20-21 0.0 8.023827558317179E-5 0.0 1.2344350089718735E-4 0.0 22-23 0.0 8.641045062803115E-5 0.0 1.2344350089718735E-4 0.0 24-25 0.0 9.258262567289052E-5 0.0 1.543043761214842E-4 0.0 26-27 0.0 9.875480071774989E-5 0.0 1.8516525134578104E-4 0.0 28-29 0.0 9.875480071774989E-5 0.0 3.2712527737754655E-4 0.0 30-31 0.0 9.875480071774989E-5 0.0 6.974557800691086E-4 0.0 32-33 0.0 9.875480071774989E-5 0.0 0.001456633310586811 0.0 34-35 0.0 1.1109915080746862E-4 0.0 0.0027774787701867155 0.0 36-37 0.0 1.543043761214842E-4 0.0 0.004709369559227699 0.0 38-39 0.0 1.7899307630092168E-4 0.0 0.00771521880607421 0.0 40-41 0.0 1.8516525134578104E-4 0.0 0.010609968902113255 0.0 42-43 0.0 1.9750960143549977E-4 0.0 0.01387504950084386 0.0 44-45 0.0 2.098539515252185E-4 1.2344350089718736E-5 0.01731295100083053 0.0 46-47 0.0 2.2837047665979663E-4 1.2344350089718736E-5 0.021294003904764817 0.0 48-49 0.0 2.4071482674951536E-4 1.2344350089718736E-5 0.02561452643616638 0.0 50-51 0.0 2.468870017943747E-4 1.2344350089718736E-5 0.029694334140818422 0.0 52-53 0.0 2.592313518840935E-4 1.2344350089718736E-5 0.033663042694663 0.0 54-55 0.0 2.592313518840935E-4 1.2344350089718736E-5 0.037878638250301945 0.0 56-57 0.0 2.592313518840935E-4 1.2344350089718736E-5 0.042316432107555826 0.0 58-59 0.0 2.592313518840935E-4 1.2344350089718736E-5 0.04705049036696296 0.0 60-61 0.0 2.6540352692895283E-4 1.2344350089718736E-5 0.051531489449530864 0.0 62-63 0.0 2.715757019738122E-4 1.2344350089718736E-5 0.055710051954900655 0.0 64-65 0.0 2.715757019738122E-4 1.2344350089718736E-5 0.060221911912692855 0.0 66-67 0.0 2.715757019738122E-4 1.2344350089718736E-5 0.06460415619454302 0.0 68-69 0.0 2.715757019738122E-4 1.2344350089718736E-5 0.06922711530314267 0.0 70-71 0.0 2.777478770186716E-4 1.2344350089718736E-5 0.07384390223669748 0.0 72-73 0.0 2.8392005206353096E-4 1.2344350089718736E-5 0.07778174991531775 0.0 74-75 0.0 2.8392005206353096E-4 1.2344350089718736E-5 0.08023210340812693 0.0 76-77 0.0 2.962644021532497E-4 1.2344350089718736E-5 0.08278121170165384 0.0 78-79 0.0 3.086087522429684E-4 1.2344350089718736E-5 0.08478099641618828 0.0 80-81 0.0 3.086087522429684E-4 1.2344350089718736E-5 0.08542907479589851 0.0 82-83 0.0 3.086087522429684E-4 1.2344350089718736E-5 0.08584878269894895 0.0 84-85 0.0 3.1478092728782776E-4 1.2344350089718736E-5 0.08602160360020503 0.0 86-87 0.0 3.2095310233268715E-4 1.2344350089718736E-5 0.08616356362623678 0.0 88 0.0 3.2095310233268715E-4 1.2344350089718736E-5 0.08618825232641622 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13800 0.0 51.258083 1 GTATCAA 25260 0.0 38.25366 1 CTTATAC 6155 0.0 30.997149 1 ATCAACG 30765 0.0 30.882643 3 TCAACGC 31115 0.0 30.535067 4 CAACGCA 31385 0.0 30.28277 5 TATCAAC 31650 0.0 30.247843 2 AACGCAG 32105 0.0 29.65303 6 ACGCAGA 36500 0.0 26.070816 7 CGCAGAG 36705 0.0 25.925207 8 TATACAC 9300 0.0 25.780853 3 GTGGTAT 6290 0.0 24.644644 1 TGGTATC 6085 0.0 24.005201 2 GCAGAGT 41030 0.0 23.09902 9 GAGTACT 26170 0.0 20.743233 12-13 CAGAGTA 41040 0.0 19.866959 10-11 TACATGG 27160 0.0 19.6155 2 GTACTTT 28645 0.0 18.906956 14-15 AGAGTAC 38870 0.0 18.900372 10-11 ACATGGG 27745 0.0 18.726082 3 >>END_MODULE