##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138648_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7552195 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.78417082715687 33.0 33.0 33.0 33.0 33.0 2 32.78169538789716 33.0 33.0 33.0 33.0 33.0 3 32.781112246174786 33.0 33.0 33.0 33.0 33.0 4 36.72483562725804 37.0 37.0 37.0 37.0 37.0 5 36.74051967672975 37.0 37.0 37.0 37.0 37.0 6 36.74869796132118 37.0 37.0 37.0 37.0 37.0 7 36.737527434077116 37.0 37.0 37.0 37.0 37.0 8 36.73006695404449 37.0 37.0 37.0 37.0 37.0 9 36.727321394640896 37.0 37.0 37.0 37.0 37.0 10-11 36.70107412480743 37.0 37.0 37.0 37.0 37.0 12-13 36.67950986435069 37.0 37.0 37.0 37.0 37.0 14-15 38.930868906324584 40.0 40.0 40.0 37.0 40.0 16-17 38.88746913976665 40.0 40.0 40.0 37.0 40.0 18-19 38.91446725091183 40.0 40.0 40.0 37.0 40.0 20-21 38.94656235266783 40.0 40.0 40.0 37.0 40.0 22-23 38.97455259932542 40.0 40.0 40.0 37.0 40.0 24-25 38.982579902159145 40.0 40.0 40.0 37.0 40.0 26-27 38.89121709806837 40.0 40.0 40.0 37.0 40.0 28-29 38.81884476635257 40.0 38.5 40.0 37.0 40.0 30-31 38.75856307221672 40.0 37.0 40.0 37.0 40.0 32-33 38.44274350658971 40.0 37.0 40.0 37.0 40.0 34-35 38.5859112572755 40.0 37.0 40.0 37.0 40.0 36-37 38.55790671347722 40.0 37.0 40.0 37.0 40.0 38-39 38.59368187467817 40.0 37.0 40.0 37.0 40.0 40-41 38.560590170921856 40.0 37.0 40.0 37.0 40.0 42-43 38.26795480502671 40.0 37.0 40.0 37.0 40.0 44-45 38.176919954811595 40.0 37.0 40.0 37.0 40.0 46-47 38.20317258528563 40.0 37.0 40.0 37.0 40.0 48-49 38.07407433363941 40.0 37.0 40.0 37.0 40.0 50-51 38.18222969421306 40.0 37.0 40.0 37.0 40.0 52-53 38.1733737068691 40.0 37.0 40.0 37.0 40.0 54-55 38.118881370175416 40.0 37.0 40.0 37.0 40.0 56-57 38.015650146812064 40.0 37.0 40.0 35.0 40.0 58-59 37.8942133745818 40.0 37.0 40.0 33.0 40.0 60-61 37.66091505112841 40.0 37.0 40.0 33.0 40.0 62-63 37.47793056619285 38.5 37.0 40.0 33.0 40.0 64-65 37.30928989103592 37.0 37.0 40.0 33.0 40.0 66-67 37.07757359859386 37.0 37.0 40.0 33.0 40.0 68-69 36.805998243332795 37.0 37.0 40.0 33.0 40.0 70-71 36.36215212238634 37.0 37.0 40.0 33.0 40.0 72-73 36.25178674404003 37.0 37.0 37.0 33.0 40.0 74-75 36.01665957892035 37.0 37.0 37.0 33.0 40.0 76-77 33.980191904173765 35.0 33.0 37.0 27.0 37.0 78-79 35.37967045458909 37.0 33.0 37.0 33.0 37.0 80-81 35.674088931636476 37.0 37.0 37.0 33.0 37.0 82-83 35.66900204005456 37.0 37.0 37.0 33.0 37.0 84-85 35.56314561226989 37.0 37.0 37.0 33.0 37.0 86-87 35.13373386697103 37.0 33.0 37.0 33.0 37.0 88-89 35.06284009570952 37.0 33.0 37.0 33.0 37.0 90-91 35.22589651537064 37.0 33.0 37.0 33.0 37.0 92-93 35.21639390211051 37.0 33.0 37.0 33.0 37.0 94-95 35.18760960732821 37.0 33.0 37.0 33.0 37.0 96-97 35.14478628442021 37.0 33.0 37.0 33.0 37.0 98-99 35.10779815591859 37.0 33.0 37.0 33.0 37.0 100 35.051988712059455 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 18.0 21 141.0 22 493.0 23 1454.0 24 3547.0 25 7492.0 26 13824.0 27 22613.0 28 35208.0 29 50742.0 30 70450.0 31 96170.0 32 130382.0 33 179340.0 34 255503.0 35 397503.0 36 778395.0 37 2199961.0 38 3184447.0 39 124507.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.7902874594737 20.10097726554995 14.663657387024568 23.445077887951783 2 14.583455538422935 20.89936766728084 41.805541302892735 22.71163549140349 3 18.17042219895571 25.951685245818286 30.549649547947112 25.3282430072789 4 12.406197198989796 18.1706522028454 39.05983925781718 30.36331134034762 5 13.403975898875817 37.614007775299484 35.40935533505338 13.572660990771318 6 29.76292322960411 37.80528707216909 18.86091394621034 13.570875752016468 7 26.35251076011676 33.00488136230592 22.886048360774584 17.75655951680273 8 24.377786855344706 36.42507906641711 21.179445181169182 18.017688897068997 9 25.604529544059705 17.01007455448383 21.38008883510026 36.00530706635621 10-11 24.096590461448624 26.90833592088128 28.754607104292194 20.2404665133779 12-13 25.012549331684365 24.548876187651405 28.916533537600657 21.522040943063573 14-15 22.144634771745167 25.92276814886268 26.912434067181795 25.020163012210357 16-17 21.44722825615599 28.9797270859664 27.59425570976385 21.978788948113763 18-19 21.428127848923392 28.0630002270863 29.53341379559188 20.975458128398433 20-21 22.3422863106437 27.168438055376225 29.514714020988926 20.974561612991153 22-23 22.044299113167572 27.114376076858015 29.353426340230126 21.487898469744287 24-25 21.719883091400757 27.243881296087764 29.458464909373056 21.577770703138427 26-27 21.687784983277623 27.435998516983446 29.303899493152446 21.572317006586488 28-29 21.59041050944948 27.559542928741127 29.33344902473607 21.516597537073324 30-31 21.946873577905244 27.336531774473443 29.257814370221652 21.458780277399658 32-33 21.755731613927313 27.44249728399486 29.088642838190616 21.713128263887214 34-35 21.84703882972084 27.57678836804648 29.12333746555445 21.452835336678227 36-37 21.84625405919047 27.52831418591064 29.074824173977287 21.550607580921604 38-39 21.686386789850147 27.661294772328127 29.110602706358122 21.5417157314636 40-41 21.984265787525036 27.495518698390903 28.965022762263615 21.555192751820446 42-43 21.934265875341797 27.635635245398856 28.662315197744885 21.76778368151446 44-45 22.068978550505527 27.751196172248804 28.456313298342966 21.7235119789027 46-47 21.999727088833556 27.761205088024255 28.186576058864453 22.052491764277732 48-49 22.044367036969497 27.905766510758895 28.100528135676512 21.949338316595092 50-51 22.010040075635708 28.006081901052692 27.986354528264613 21.997523495046988 52-53 22.178219144565105 27.922312111584187 27.832586197743947 22.06688254610676 54-55 22.12986802142083 27.85411524759146 27.935734361210173 22.080282369777535 56-57 22.118178908411817 27.977558557908022 27.853748729746364 22.050513803933793 58-59 22.097315019028244 28.026171159230135 27.857381025676897 22.019132796064728 60-61 22.241112464880626 27.977750467898066 27.829062168943935 21.952074898277374 62-63 22.138890486799102 28.017840505455883 27.776502321334828 22.06676668641019 64-65 22.137297490796684 27.97027700553743 27.791215648742053 22.101209854923834 66-67 22.198079709761576 28.02799370843924 27.622145867649557 22.151780714149627 68-69 22.163260109807283 28.013754899569886 27.702163977646173 22.12082101297666 70-71 22.176974084379967 27.781174802957693 27.69152438993661 22.35032672272573 72-73 22.198627242577942 27.862780643359297 27.683733365295428 22.254858748767337 74-75 22.06158830997987 27.96495710272185 27.679876541492852 22.293578045805422 76-77 22.166559384638436 27.935895344148054 27.537078910202673 22.360466361010843 78-79 22.21880930276981 27.98612399191715 27.50833371679262 22.286732988520413 80-81 22.147072062006398 27.97402620204432 27.58612709013018 22.2927746458191 82-83 22.199864364958653 27.96623900886027 27.65433642566295 22.17956020051813 84-85 22.35912772784385 27.91447129099927 27.539808850475683 22.18659213068119 86-87 22.180808496187495 27.967293516025066 27.564832931171214 22.287065056616225 88-89 22.280609498447813 27.914907442869065 27.554505792246424 22.249977266436698 90-91 22.240311509265545 27.95886915507037 27.602362019140198 22.198457316523886 92-93 22.26663616613783 27.958545640658745 27.610417061923425 22.164401131280002 94-95 22.122165463880364 28.044295852520385 27.602581544563385 22.230957139035866 96-97 22.207952005424158 28.13249237402491 27.72039758977554 21.93915803077539 98-99 23.291263837379983 30.072535767304153 27.876572046732363 18.7596283485835 100 22.170422544976937 31.108973793871268 21.781366973958296 24.939236687193496 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2376.0 1 2041.5 2 2397.5 3 3330.0 4 4562.5 5 7154.5 6 9317.5 7 11045.5 8 12387.5 9 12647.5 10 12004.5 11 11163.0 12 12200.5 13 16023.0 14 24537.0 15 35623.5 16 44490.0 17 50003.5 18 51403.5 19 48647.0 20 43686.0 21 38698.0 22 35848.5 23 36946.5 24 42221.5 25 51414.0 26 64398.0 27 79553.0 28 94296.5 29 109890.0 30 124910.0 31 139314.5 32 156354.0 33 173964.5 34 191673.5 35 208555.5 36 226472.5 37 243757.5 38 255750.5 39 264629.5 40 275127.0 41 284666.5 42 290722.0 43 296846.0 44 303037.0 45 309493.5 46 313376.5 47 314309.5 48 313296.0 49 308437.0 50 300864.5 51 290442.5 52 276212.5 53 260037.5 54 243088.0 55 224676.5 56 205844.5 57 185786.5 58 165239.5 59 143765.0 60 120071.5 61 97401.5 62 76652.5 63 58795.5 64 44138.0 65 33070.5 66 25196.0 67 19340.5 68 14744.0 69 10571.0 70 7531.5 71 5440.0 72 3791.0 73 2575.0 74 1682.0 75 1109.5 76 732.5 77 460.5 78 295.0 79 195.0 80 139.0 81 106.0 82 74.5 83 44.0 84 28.0 85 20.0 86 16.5 87 14.5 88 11.5 89 8.5 90 4.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.001218188884158844 4 0.011228523627898909 5 0.011202041260851978 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 5.296585271613196E-5 22-23 0.0 24-25 0.0056621871591926234 26-27 0.046087733104261557 28-29 0.08224302336171142 30-31 0.07451010056773393 32-33 0.0341175969934491 34-35 0.003147074527525434 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.863318011480044E-4 56-57 5.84311453875103E-4 58-59 2.1812202895075524E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 2.2906960478468374E-4 72-73 0.012338596979831864 74-75 0.027404229867736527 76-77 0.0022882129605322444 78-79 0.0 80-81 0.0 82-83 0.007484586103194154 84-85 0.04487523294580531 86-87 0.037830597916418435 88-89 0.009407823160799609 90-91 1.7613957904150375E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 94.0 20-21 411.0 22-23 944.0 24-25 2428.0 26-27 3471.0 28-29 6327.0 30-31 14679.0 32-33 18936.0 34-35 26132.0 36-37 37078.0 38-39 44622.0 40-41 47784.0 42-43 56781.0 44-45 67649.0 46-47 67197.0 48-49 57909.0 50-51 51404.0 52-53 50508.0 54-55 53029.0 56-57 54333.0 58-59 53829.0 60-61 52703.0 62-63 52172.0 64-65 54400.0 66-67 57106.0 68-69 57714.0 70-71 56980.0 72-73 54869.0 74-75 56581.0 76-77 55484.0 78-79 58566.0 80-81 59467.0 82-83 58078.0 84-85 58588.0 86-87 61089.0 88-89 64864.0 90-91 67855.0 92-93 71475.0 94-95 85525.0 96-97 243304.0 98-99 461965.0 100-101 5047865.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.47914403723442 #Duplication Level Percentage of deduplicated Percentage of total 1 90.27799338358065 78.07163593211169 2 6.961538898637041 12.040558502720861 3 1.6361339732186317 4.2447439660256014 4 0.553777780446857 1.9156091375953495 5 0.24266248593500384 1.0492622036803285 6 0.11857327511698426 0.6152469202684984 7 0.0655725994540678 0.39694635911589465 8 0.03995226547670242 0.2764030176618862 9 0.027029405841933113 0.21037318929408594 >10 0.07487682202586053 0.9467883965790526 >50 0.0014264207058830199 0.08231474391545102 >100 3.2805761527911713E-4 0.053754099589361344 >500 8.975530256420599E-5 0.04226387424403955 >1k 4.487664249525188E-5 0.05409965719789595 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.3241183523465694E-5 2 0.0 0.0 0.0 0.0 1.3241183523465694E-5 3 0.0 0.0 0.0 1.3241183523465694E-5 1.3241183523465694E-5 4 0.0 7.944710114079417E-5 0.0 2.6482367046931387E-5 1.3241183523465694E-5 5 0.0 7.944710114079417E-5 0.0 2.6482367046931387E-5 1.3241183523465694E-5 6 1.5889420228158834E-4 7.944710114079417E-5 0.0 2.6482367046931387E-5 1.3241183523465694E-5 7 1.5889420228158834E-4 7.944710114079417E-5 0.0 5.2964734093862775E-5 1.3241183523465694E-5 8 1.7213538580505402E-4 7.944710114079417E-5 0.0 5.2964734093862775E-5 2.6482367046931387E-5 9 1.7213538580505402E-4 1.4565301875812264E-4 0.0 5.2964734093862775E-5 6.620591761732847E-5 10-11 1.7213538580505402E-4 1.4565301875812264E-4 0.0 6.620591761732847E-5 7.944710114079417E-5 12-13 1.7213538580505402E-4 1.4565301875812264E-4 0.0 9.268828466425986E-5 9.268828466425986E-5 14-15 1.7213538580505402E-4 1.8537656932851972E-4 0.0 9.268828466425986E-5 1.9861775285198542E-4 16-17 2.383413034223825E-4 1.8537656932851972E-4 0.0 9.268828466425986E-5 2.5820307870758107E-4 18-19 2.383413034223825E-4 2.251001198989168E-4 0.0 9.268828466425986E-5 3.111678128014438E-4 20-21 2.515824869458482E-4 2.648236704693139E-4 0.0 9.268828466425986E-5 3.3102958808664236E-4 22-23 2.515824869458482E-4 2.9792662927797815E-4 0.0 9.268828466425986E-5 3.7075313865703944E-4 24-25 2.515824869458482E-4 3.111678128014438E-4 0.0 9.93088764259927E-5 4.3033846451263506E-4 26-27 2.515824869458482E-4 3.177884045631767E-4 0.0 1.5227361051985548E-4 4.502002397978336E-4 28-29 2.515824869458482E-4 3.177884045631767E-4 0.0 3.111678128014438E-4 4.6344142332129933E-4 30-31 2.515824869458482E-4 3.5751195513357377E-4 0.0 9.93088764259927E-4 4.6344142332129933E-4 32-33 2.5820307870758107E-4 3.7075313865703944E-4 0.0 0.0020457628543754497 4.76682606844765E-4 34-35 2.648236704693139E-4 4.2371787275090225E-4 0.0 0.003621463693667867 4.76682606844765E-4 36-37 2.648236704693139E-4 4.899237903682307E-4 0.0 0.006362388683025267 4.899237903682307E-4 38-39 2.648236704693139E-4 4.899237903682307E-4 0.0 0.010083161253119127 5.16406157415162E-4 40-41 2.648236704693139E-4 5.561297079855592E-4 0.0 0.014002551576064972 5.296473409386278E-4 42-43 2.648236704693139E-4 6.09094442079422E-4 0.0 0.017630635861494572 5.495091162238264E-4 44-45 2.7144426223104674E-4 7.216445020288803E-4 0.0 0.02206643234185558 5.561297079855592E-4 46-47 2.780648539927796E-4 7.679886443610102E-4 0.0 0.026422781721075796 5.62750299747292E-4 48-49 2.780648539927796E-4 7.679886443610102E-4 0.0 0.031116781280144383 5.693708915090248E-4 50-51 2.913060375162453E-4 8.937798878339343E-4 0.0 0.03554595716874366 5.693708915090248E-4 52-53 2.913060375162453E-4 9.004004795956672E-4 0.0 0.040120786076101055 6.223356256028876E-4 54-55 2.913060375162453E-4 9.136416631191329E-4 0.0 0.045006782796259893 6.753003596967505E-4 56-57 2.913060375162453E-4 9.268828466425987E-4 0.0 0.04978685004823101 6.95162134981949E-4 58-59 2.913060375162453E-4 9.335034384043315E-4 0.0 0.05462650262605773 7.150239102671475E-4 60-61 3.177884045631767E-4 9.599858054512629E-4 0.0 0.059618428814404295 7.150239102671475E-4 62-63 3.7075313865703944E-4 9.666063972129957E-4 0.0 0.06433891074051981 7.746092361227431E-4 64-65 3.7075313865703944E-4 0.0010990182324476527 0.0 0.06931759574534291 7.81229827884476E-4 66-67 3.773737304187723E-4 0.0011122594159711184 0.0 0.0744353131771624 7.878504196462088E-4 68-69 3.839943221805051E-4 0.0011122594159711184 0.0 0.07957951297602882 8.143327866931402E-4 70-71 4.0385609746570366E-4 0.0011188800077328513 0.0 0.08447875087971113 8.408151537400716E-4 72-73 4.369590562743679E-4 0.0011387417830180497 0.0 0.08843124416146564 9.136416631191329E-4 74-75 4.4357964803610074E-4 0.0011784653335884469 0.0 0.09137078690367503 9.136416631191329E-4 76-77 4.6344142332129933E-4 0.0012645330264909739 0.0 0.09427060609531401 9.268828466425987E-4 78-79 4.76682606844765E-4 0.0012843948017761723 0.0 0.09622368066502521 9.268828466425987E-4 80-81 4.76682606844765E-4 0.0012910153935379051 0.0 0.09675994859772556 9.798475807364614E-4 82-83 4.76682606844765E-4 0.001297635985299638 0.0 0.0971902870622382 0.001032812314830324 84-85 4.833031986064978E-4 0.0013108771688231037 0.0 0.09740876659037538 0.001039432906592057 86-87 4.899237903682307E-4 0.0013241183523465695 0.0 0.09748159309975443 0.0010526740901155227 88 4.899237903682307E-4 0.001430047820534295 0.0 0.0974948342832779 0.001085777048924187 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11280 0.0 51.344814 1 GTATCAA 20715 0.0 38.31947 1 ATCAACG 25120 0.0 31.258762 3 TCAACGC 25160 0.0 31.225887 4 CAACGCA 25610 0.0 30.690481 5 TATCAAC 26095 0.0 30.271406 2 AACGCAG 26180 0.0 30.083736 6 ACGCAGA 29970 0.0 26.236485 7 CGCAGAG 30240 0.0 26.016392 8 GTGGTAT 5095 0.0 25.896168 1 TGGTATC 5165 0.0 23.222914 2 GCAGAGT 34740 0.0 22.560099 9 GAGTACT 21365 0.0 20.53661 12-13 GTACATG 23725 0.0 20.02416 1 CAGAGTA 33815 0.0 19.941278 10-11 TACATGG 23450 0.0 19.857092 2 AGAGTAC 31710 0.0 19.30668 10-11 ACATGGG 24260 0.0 18.787968 3 GTACTTT 23710 0.0 18.5239 14-15 AGTACTT 22725 0.0 17.828178 12-13 >>END_MODULE