##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138647_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9192237 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.779656029321266 33.0 33.0 33.0 33.0 33.0 2 32.77780479332724 33.0 33.0 33.0 33.0 33.0 3 32.77629134235769 33.0 33.0 33.0 33.0 33.0 4 36.71976571100158 37.0 37.0 37.0 37.0 37.0 5 36.73468710608745 37.0 37.0 37.0 37.0 37.0 6 36.743979729852484 37.0 37.0 37.0 37.0 37.0 7 36.73142435296218 37.0 37.0 37.0 37.0 37.0 8 36.723059577336834 37.0 37.0 37.0 37.0 37.0 9 36.71938386706087 37.0 37.0 37.0 37.0 37.0 10-11 36.69259593720223 37.0 37.0 37.0 37.0 37.0 12-13 36.67095566617788 37.0 37.0 37.0 37.0 37.0 14-15 38.907322722423274 40.0 40.0 40.0 37.0 40.0 16-17 38.86023815530431 40.0 37.0 40.0 37.0 40.0 18-19 38.88917577951918 40.0 40.0 40.0 37.0 40.0 20-21 38.92590423417746 40.0 40.0 40.0 37.0 40.0 22-23 38.95453856602039 40.0 40.0 40.0 37.0 40.0 24-25 38.962005526944104 40.0 40.0 40.0 37.0 40.0 26-27 38.866154562283086 40.0 40.0 40.0 37.0 40.0 28-29 38.79483907910067 40.0 38.5 40.0 37.0 40.0 30-31 38.73187972623528 40.0 37.0 40.0 37.0 40.0 32-33 38.41828593962542 40.0 37.0 40.0 37.0 40.0 34-35 38.55274923779346 40.0 37.0 40.0 37.0 40.0 36-37 38.523722336784466 40.0 37.0 40.0 37.0 40.0 38-39 38.55548005585267 40.0 37.0 40.0 37.0 40.0 40-41 38.52287320889396 40.0 37.0 40.0 37.0 40.0 42-43 38.228958989756265 40.0 37.0 40.0 37.0 40.0 44-45 38.135288320065655 40.0 37.0 40.0 35.0 40.0 46-47 38.1579337749659 40.0 37.0 40.0 37.0 40.0 48-49 38.02868701388965 40.0 37.0 40.0 35.0 40.0 50-51 38.130815083716996 40.0 37.0 40.0 37.0 40.0 52-53 38.12089426782623 40.0 37.0 40.0 37.0 40.0 54-55 38.06314965156671 40.0 37.0 40.0 37.0 40.0 56-57 37.95724133345283 40.0 37.0 40.0 33.0 40.0 58-59 37.83414618993875 40.0 37.0 40.0 33.0 40.0 60-61 37.59805106034149 40.0 37.0 40.0 33.0 40.0 62-63 37.41392966969748 37.0 37.0 40.0 33.0 40.0 64-65 37.25039886391114 37.0 37.0 40.0 33.0 40.0 66-67 37.019605621308976 37.0 37.0 40.0 33.0 40.0 68-69 36.74960358865361 37.0 37.0 40.0 33.0 40.0 70-71 36.311592739238606 37.0 37.0 40.0 33.0 40.0 72-73 36.204489815297364 37.0 37.0 37.0 33.0 40.0 74-75 35.96950428616345 37.0 37.0 37.0 33.0 40.0 76-77 33.924237784583966 35.0 33.0 37.0 27.0 37.0 78-79 35.34311210642841 37.0 33.0 37.0 33.0 37.0 80-81 35.64183016783353 37.0 37.0 37.0 33.0 37.0 82-83 35.63544456699188 37.0 37.0 37.0 33.0 37.0 84-85 35.52477077221968 37.0 35.0 37.0 33.0 37.0 86-87 35.100698030085965 37.0 33.0 37.0 33.0 37.0 88-89 35.02460411435359 37.0 33.0 37.0 33.0 37.0 90-91 35.17966457324752 37.0 33.0 37.0 33.0 37.0 92-93 35.16567752264201 37.0 33.0 37.0 33.0 37.0 94-95 35.13563368547095 37.0 33.0 37.0 33.0 37.0 96-97 35.09323589437135 37.0 33.0 37.0 33.0 37.0 98-99 35.05580190250113 37.0 33.0 37.0 33.0 37.0 100 35.00112587640896 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 2.0 19 8.0 20 42.0 21 149.0 22 624.0 23 1903.0 24 4710.0 25 9820.0 26 17673.0 27 29144.0 28 44877.0 29 64080.0 30 89544.0 31 121273.0 32 163754.0 33 223902.0 34 321006.0 35 496808.0 36 973011.0 37 2708794.0 38 3776409.0 39 144702.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.52593106552844 20.29564729455953 14.810551555622423 23.367870084289603 2 14.576386574889225 20.804489701473102 41.99184594566045 22.627277777977223 3 18.096083746449544 26.110268058742008 30.539471441158287 25.25417675365016 4 12.440359011172152 18.16031254086769 38.96684954357657 30.432478904383586 5 13.341509940801377 37.62874321597439 35.41360646814403 13.6161403750802 6 29.640869790454705 37.80039613861131 18.833108850435426 13.725625220498557 7 26.334014233967206 32.97831637717783 22.89365472191372 17.794014666941248 8 24.318802920333756 36.51663898570065 21.050316696577774 18.11424139738782 9 25.408885780468886 17.201732287798933 21.533202418519018 35.85617951321316 10-11 24.14702210136662 26.902347056543473 28.60410365833692 20.346527183752986 12-13 25.02180916353658 24.520342545563174 28.8730915010133 21.584756789886946 14-15 22.156271645302443 25.8608813066939 26.886904678371543 25.095942369632112 16-17 21.4320464104657 29.008194632057467 27.524725483035304 22.03503347444153 18-19 21.40524118340291 27.95670955829359 29.588793239338802 21.049256018964698 20-21 22.277020967863535 27.00513347502872 29.621038642326564 21.096806914781183 22-23 21.988978004423466 27.01629200824811 29.45549113691556 21.53923885041287 24-25 21.771678992891562 27.189267043055455 29.50259438376856 21.536459580284426 26-27 21.651317396230084 27.350387836244316 29.466618638084757 21.53167612944084 28-29 21.547441060837347 27.41686973977429 29.501813596545727 21.53387560284263 30-31 21.838177074849206 27.216195996225366 29.340691149247043 21.60493577967838 32-33 21.755619816915406 27.294757321698178 29.24794047999619 21.70168238139023 34-35 21.82121409929177 27.480644666528203 29.297296356057206 21.400844878122825 36-37 21.79566921102589 27.45982874155776 29.10697233855658 21.637529708859766 38-39 21.63674059430462 27.534639582259864 29.229630758012586 21.59898906542293 40-41 21.921251556023282 27.39529813206099 29.08634157094244 21.597108740973287 42-43 21.960908176131433 27.520792283149774 28.76735919203454 21.75094034868425 44-45 22.005557231578234 27.6913074688311 28.55675698797665 21.746378311614016 46-47 22.023300333929445 27.67193317270962 28.247935589458432 22.0568309039025 48-49 22.102372440577128 27.76055941013716 28.123550516510875 22.01351763277484 50-51 22.000770334448145 27.916768969485783 28.05627071198601 22.026189984080062 52-53 22.069153663161842 27.880791114023896 27.97058383483121 22.07947138798306 54-55 22.117552887819794 27.806766697383335 27.95788144991418 22.11779896488269 56-57 22.18352004637808 27.925787990865803 27.847180877282067 22.04351108547405 58-59 22.07649001801411 28.061898875474263 27.947532362113087 21.914078744398545 60-61 22.26478447659475 27.98314328554899 27.814016360223633 21.938055877632635 62-63 22.111376915993418 28.069557216252285 27.812305840041667 22.006760027712634 64-65 22.09261534558944 28.004658787683002 27.803707944137397 22.099017922590168 66-67 22.17215481103756 27.940487658303358 27.68469461702297 22.20266291363611 68-69 22.152052099969218 27.900714274570383 27.787145534155687 22.16008809130471 70-71 22.14105361351709 27.69544937962436 27.769543376774124 22.39395363008442 72-73 22.24440739894292 27.731859954905136 27.75326562407602 22.270467022075927 74-75 22.083774320217632 27.875068315128875 27.718973881679908 22.322183482973575 76-77 22.223899718987276 27.764716352584205 27.62665580775631 22.384728120672204 78-79 22.235835479778533 27.778698028822262 27.588622597297174 22.39684389410203 80-81 22.14358633808861 27.814558833161012 27.705309421067398 22.336545407682976 82-83 22.19740071451736 27.778424628022734 27.79774461957641 22.226430037883496 84-85 22.382588906712083 27.7234370706984 27.67464300536376 22.21933101722576 86-87 22.2509658912112 27.747857317052972 27.714156147456094 22.28702064427973 88-89 22.341636520931843 27.65201083011513 27.724768301013157 22.281584347939866 90-91 22.319228241883426 27.674821061385167 27.71989296689276 22.286057729838642 92-93 22.37070915766964 27.570525347932257 27.82288616896848 22.235879325429625 94-95 22.176848736082114 27.644817653918857 27.835709968847393 22.342623641151636 96-97 22.248863515412868 27.798083554433937 27.8963893552186 22.0566635749346 98-99 23.431098372617463 29.668465210275347 28.045846224328447 18.854590192778748 100 22.326455671242794 30.740902963870454 21.88056594442056 25.052075420466192 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1648.0 1 1578.5 2 2411.5 3 3620.0 4 5113.0 5 8325.0 6 11020.0 7 13203.5 8 15056.0 9 15392.5 10 14482.5 11 13446.0 12 14711.0 13 19383.5 14 29818.0 15 43823.5 16 55564.5 17 62732.5 18 64003.0 19 60361.0 20 54656.0 21 48537.0 22 44885.0 23 46375.0 24 52729.0 25 63660.5 26 78677.0 27 95255.5 28 112815.0 29 133522.0 30 153832.5 31 173889.0 32 195819.5 33 217078.0 34 237942.0 35 256101.0 36 274980.0 37 294569.5 38 309461.0 39 320005.0 40 331128.5 41 340872.5 42 345916.0 43 351725.0 44 357322.0 45 363715.5 46 366906.0 47 366506.5 48 367787.0 49 365262.0 50 357931.0 51 348372.5 52 336139.5 53 319158.5 54 300229.5 55 277575.5 56 253121.0 57 229321.0 58 204831.5 59 178740.0 60 148906.5 61 120979.0 62 95812.0 63 74139.5 64 56944.0 65 43148.0 66 32515.0 67 24759.5 68 18942.0 69 13644.5 70 9434.0 71 6754.0 72 4741.5 73 3183.5 74 2076.5 75 1274.5 76 835.0 77 549.0 78 365.5 79 247.0 80 167.5 81 112.5 82 76.5 83 53.5 84 39.0 85 26.0 86 20.0 87 16.0 88 10.0 89 6.0 90 4.5 91 4.0 92 3.0 93 2.0 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0011966619224460814 4 0.010780836046764242 5 0.010617654875521595 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 3.263699760509711E-5 22-23 0.0 24-25 0.005930601085463226 26-27 0.04779335765400744 28-29 0.08449873279128606 30-31 0.07681156821138177 32-33 0.03514095515562981 34-35 0.002984204414388487 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.9920484456807642E-4 56-57 4.2496531958365915E-4 58-59 2.379041783824562E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 1.5611858717924187E-4 72-73 0.011624087098289717 74-75 0.026468081772595818 76-77 0.0024777677962790844 78-79 0.0 80-81 0.0 82-83 0.007485360791759104 84-85 0.04526029215259689 86-87 0.03847399275388596 88-89 0.009656719207526011 90-91 7.532521834212892E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 133.0 20-21 461.0 22-23 1020.0 24-25 3300.0 26-27 4038.0 28-29 7119.0 30-31 16765.0 32-33 21323.0 34-35 29922.0 36-37 42717.0 38-39 51502.0 40-41 55988.0 42-43 66333.0 44-45 79604.0 46-47 77873.0 48-49 68019.0 50-51 60016.0 52-53 57189.0 54-55 61175.0 56-57 64884.0 58-59 64172.0 60-61 63872.0 62-63 63238.0 64-65 66426.0 66-67 71437.0 68-69 69805.0 70-71 67547.0 72-73 64574.0 74-75 66168.0 76-77 65838.0 78-79 69622.0 80-81 71261.0 82-83 69345.0 84-85 71664.0 86-87 74851.0 88-89 79977.0 90-91 84161.0 92-93 89021.0 94-95 101589.0 96-97 295674.0 98-99 565434.0 100-101 6187180.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.87429237459577 #Duplication Level Percentage of deduplicated Percentage of total 1 88.65449125380171 73.47178228488606 2 7.594793476851737 12.588262702505673 3 2.0032858609045 4.9806269443948 4 0.7731739281472128 2.5630496871074726 5 0.3666850053036917 1.5194380169459172 6 0.20694343243059338 1.0290174314553242 7 0.12048162865565921 0.6989380803283602 8 0.06600360787715708 0.43760018375917503 9 0.04618170697769242 0.34445486577844725 >10 0.16490259013731537 2.0809542768636633 >50 0.0022893978675483854 0.12271647113449756 >100 7.21606805079548E-4 0.11650631241550471 >500 2.3252120272601063E-5 0.017458647305035303 >1k 2.3252119843244358E-5 0.029194095120005314 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0878744749509831E-5 2 0.0 0.0 0.0 0.0 3.263623424852949E-5 3 0.0 0.0 0.0 0.0 3.263623424852949E-5 4 0.0 2.1757489499019662E-5 0.0 0.0 3.263623424852949E-5 5 0.0 5.4393723747549155E-5 0.0 2.1757489499019662E-5 3.263623424852949E-5 6 0.0 5.4393723747549155E-5 0.0 2.1757489499019662E-5 5.4393723747549155E-5 7 0.0 5.4393723747549155E-5 0.0 3.263623424852949E-5 5.4393723747549155E-5 8 0.0 6.527246849705899E-5 0.0 4.3514978998039324E-5 6.527246849705899E-5 9 0.0 8.702995799607865E-5 0.0 7.615121324656881E-5 8.702995799607865E-5 10-11 0.0 8.702995799607865E-5 0.0 9.790870274558847E-5 8.702995799607865E-5 12-13 0.0 8.702995799607865E-5 0.0 1.1422681986985323E-4 1.0334807512034339E-4 14-15 0.0 1.5774179886789255E-4 0.0 1.5774179886789255E-4 1.6318117124264748E-4 16-17 0.0 1.740599159921573E-4 0.0 1.740599159921573E-4 1.8493866074166713E-4 18-19 0.0 1.9037803311642204E-4 0.0 1.9037803311642204E-4 1.9581740549117694E-4 20-21 0.0 2.0669615024068678E-4 0.0 1.9581740549117694E-4 1.9581740549117694E-4 22-23 0.0 2.2301426736495152E-4 0.0 2.1213552261544171E-4 2.2845363973970646E-4 24-25 0.0 2.774079911125007E-4 0.0 2.5021112923872613E-4 2.7196861873774575E-4 26-27 0.0 3.154835977357851E-4 0.0 2.774079911125007E-4 2.7196861873774575E-4 28-29 0.0 3.3180171486004985E-4 0.0 5.058616308522071E-4 2.774079911125007E-4 30-31 0.0 3.807560662328441E-4 0.0 0.0011205107091995126 2.9372610823676543E-4 32-33 0.0 3.916348109823539E-4 0.0 0.002447717568639712 3.0460485298627524E-4 34-35 0.0 4.297104176056383E-4 0.0 0.004166559239062265 3.372410872348048E-4 36-37 0.0 4.895435137279424E-4 0.0 0.006543564966830163 3.372410872348048E-4 38-39 5.4393723747549155E-6 5.276191203512268E-4 0.0 0.010617654875521595 3.589985767338244E-4 40-41 1.0878744749509831E-5 5.928915888482858E-4 0.0 0.014669987294714006 3.589985767338244E-4 42-43 1.0878744749509831E-5 6.581640573453448E-4 0.0 0.018374199881922106 3.86195438607599E-4 44-45 1.0878744749509831E-5 7.615121324656882E-4 0.0 0.022829045856846378 4.1339230048137356E-4 46-47 1.0878744749509831E-5 8.159058562132374E-4 0.0 0.028110676432733406 4.2971041760563836E-4 48-49 1.0878744749509831E-5 8.159058562132374E-4 0.0 0.033163853368880725 4.3514978998039324E-4 50-51 1.0878744749509831E-5 8.811783247102963E-4 0.0 0.03832037838014837 4.3514978998039324E-4 52-53 1.0878744749509831E-5 8.811783247102963E-4 0.0 0.043253889124051086 4.949828861026973E-4 54-55 1.0878744749509831E-5 9.301326760830905E-4 0.0 0.0479698249729636 5.548159822250014E-4 56-57 2.1757489499019662E-5 9.736476550811299E-4 0.0 0.0532296980593516 5.711340993492661E-4 58-59 3.263623424852949E-5 0.0010008445169549045 0.0 0.05860923733798422 5.874522164735309E-4 60-61 3.263623424852949E-5 0.0010117232617044142 0.0 0.0639452616376188 5.874522164735309E-4 62-63 3.263623424852949E-5 0.0010280413788286789 0.0 0.06946622459799502 6.092097059725505E-4 64-65 3.263623424852949E-5 0.0011313894539490225 0.0 0.07468802207775975 6.092097059725505E-4 66-67 4.3514978998039324E-5 0.0011422681986985323 0.0 0.07977927462053035 6.146490783473054E-4 68-69 4.3514978998039324E-5 0.0011585863158227968 0.0 0.08521864699528525 6.200884507220603E-4 70-71 4.3514978998039324E-5 0.0011966619224460812 0.0 0.09003793091931811 6.200884507220603E-4 72-73 4.3514978998039324E-5 0.0012401769014441207 0.0 0.09403586961476298 7.179971534676488E-4 74-75 4.3514978998039324E-5 0.0012619343909431404 0.0 0.09682626764301225 7.179971534676488E-4 76-77 4.3514978998039324E-5 0.0013054493699411797 0.0 0.0996928168845081 7.179971534676488E-4 78-79 4.3514978998039324E-5 0.0013163281146906895 0.0 0.10138990106543164 7.179971534676488E-4 80-81 4.3514978998039324E-5 0.0013380856041897093 0.0 0.10204262575040221 7.343152705919136E-4 82-83 4.3514978998039324E-5 0.0013489643489392191 0.0 0.10232547311388947 7.506333877161783E-4 84-85 4.3514978998039324E-5 0.001354403721313974 0.0 0.1025267298917554 7.560727600909332E-4 86-87 4.3514978998039324E-5 0.0013707218384382386 0.0 0.10261919922212623 7.669515048404431E-4 88 4.3514978998039324E-5 0.001425115562185788 0.0 0.10263007796687575 7.72390877215198E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14220 0.0 51.291977 1 GTATCAA 25990 0.0 37.85855 1 TCAACGC 31550 0.0 30.72384 4 ATCAACG 31595 0.0 30.626064 3 CAACGCA 32090 0.0 30.149874 5 TATCAAC 32385 0.0 30.091068 2 AACGCAG 33100 0.0 29.304352 6 ACGCAGA 37365 0.0 25.92497 7 CGCAGAG 38100 0.0 25.424845 8 GTGGTAT 7115 0.0 24.858677 1 TGGTATC 6845 0.0 24.271307 2 GCAGAGT 43430 0.0 22.195843 9 GAGTACT 26720 0.0 21.050009 12-13 GTACATG 29345 0.0 20.2176 1 TACATGG 28925 0.0 19.9175 2 CAGAGTA 42690 0.0 19.63486 10-11 ACATGGG 29600 0.0 19.14423 3 AGAGTAC 39950 0.0 18.902714 10-11 GTACTTT 29615 0.0 18.862356 14-15 AGTACTT 29060 0.0 17.375929 12-13 >>END_MODULE