##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138645_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7848269 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.774270351844464 33.0 33.0 33.0 33.0 33.0 2 32.77356777653773 33.0 33.0 33.0 33.0 33.0 3 32.772993509779035 33.0 33.0 33.0 33.0 33.0 4 36.713902390450684 37.0 37.0 37.0 37.0 37.0 5 36.72807672621823 37.0 37.0 37.0 37.0 37.0 6 36.738182903771516 37.0 37.0 37.0 37.0 37.0 7 36.72541461053387 37.0 37.0 37.0 37.0 37.0 8 36.715927550393594 37.0 37.0 37.0 37.0 37.0 9 36.71506009796555 37.0 37.0 37.0 37.0 37.0 10-11 36.684979579573536 37.0 37.0 37.0 37.0 37.0 12-13 36.664044899582315 37.0 37.0 37.0 37.0 37.0 14-15 38.88988552762399 40.0 38.5 40.0 37.0 40.0 16-17 38.83849992909265 40.0 37.0 40.0 37.0 40.0 18-19 38.86706164123579 40.0 38.5 40.0 37.0 40.0 20-21 38.90209399033877 40.0 40.0 40.0 37.0 40.0 22-23 38.92926298082395 40.0 40.0 40.0 37.0 40.0 24-25 38.93842273271265 40.0 40.0 40.0 37.0 40.0 26-27 38.84328800526913 40.0 40.0 40.0 37.0 40.0 28-29 38.76471384455071 40.0 37.0 40.0 37.0 40.0 30-31 38.70340313503416 40.0 37.0 40.0 37.0 40.0 32-33 38.39072459836421 40.0 37.0 40.0 37.0 40.0 34-35 38.52101148576638 40.0 37.0 40.0 37.0 40.0 36-37 38.49058198961276 40.0 37.0 40.0 37.0 40.0 38-39 38.50882671997964 40.0 37.0 40.0 37.0 40.0 40-41 38.483990145986695 40.0 37.0 40.0 37.0 40.0 42-43 38.19722841509477 40.0 37.0 40.0 37.0 40.0 44-45 38.09529489212944 40.0 37.0 40.0 35.0 40.0 46-47 38.11789963987502 40.0 37.0 40.0 35.0 40.0 48-49 37.981051411498534 40.0 37.0 40.0 33.0 40.0 50-51 38.0645111798117 40.0 37.0 40.0 37.0 40.0 52-53 38.0513073840482 40.0 37.0 40.0 37.0 40.0 54-55 37.98968482038747 40.0 37.0 40.0 33.0 40.0 56-57 37.87495545101241 40.0 37.0 40.0 33.0 40.0 58-59 37.74680128488711 40.0 37.0 40.0 33.0 40.0 60-61 37.502901102514414 38.5 37.0 40.0 33.0 40.0 62-63 37.310019026120116 37.0 37.0 40.0 33.0 40.0 64-65 37.14160454616075 37.0 37.0 40.0 33.0 40.0 66-67 36.90768152419291 37.0 37.0 40.0 33.0 40.0 68-69 36.63753912409537 37.0 37.0 40.0 33.0 40.0 70-71 36.203444825431546 37.0 37.0 38.5 33.0 40.0 72-73 36.092058541893294 37.0 37.0 37.0 33.0 40.0 74-75 35.862197905538345 37.0 37.0 37.0 33.0 40.0 76-77 33.821738007934854 35.0 33.0 37.0 27.0 37.0 78-79 35.247964065777765 37.0 33.0 37.0 33.0 37.0 80-81 35.56037278260135 37.0 35.0 37.0 33.0 37.0 82-83 35.56515036107406 37.0 37.0 37.0 33.0 37.0 84-85 35.46445755471762 37.0 33.0 37.0 33.0 37.0 86-87 35.03714796630072 37.0 33.0 37.0 33.0 37.0 88-89 34.96481533503177 37.0 33.0 37.0 33.0 37.0 90-91 35.12836632773943 37.0 33.0 37.0 33.0 37.0 92-93 35.11871679635311 37.0 33.0 37.0 33.0 37.0 94-95 35.09256622011037 37.0 33.0 37.0 33.0 37.0 96-97 35.05013223019748 37.0 33.0 37.0 33.0 37.0 98-99 35.015355272389456 37.0 33.0 37.0 33.0 37.0 100 34.95912664630752 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 0.0 8 0.0 9 0.0 10 1.0 11 0.0 12 1.0 13 0.0 14 0.0 15 0.0 16 1.0 17 0.0 18 3.0 19 9.0 20 25.0 21 147.0 22 552.0 23 1752.0 24 4184.0 25 8560.0 26 16052.0 27 26409.0 28 39948.0 29 56917.0 30 78464.0 31 106430.0 32 143526.0 33 196837.0 34 281337.0 35 436301.0 36 861145.0 37 2377569.0 38 3096793.0 39 115305.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.76077552897333 19.91167733929609 14.657079159748474 23.670467971982102 2 14.749863950891593 20.632562415992624 41.6349388635889 22.982634769526886 3 18.291087249112312 25.637959767248038 30.53101590521016 25.539937078429492 4 12.679349592791445 17.98253522512336 38.16764496709952 31.17047021498568 5 13.619291340188107 37.37818858176287 35.13160322635235 13.870916851696668 6 30.183598446995124 37.290120917109235 18.45627360632007 14.070007029575565 7 26.649761877428002 32.779266357970144 22.288265093869743 18.282706670732107 8 24.705141987360523 36.17467749894913 20.906597365610175 18.21358314808017 9 25.63343585700235 16.922190103320872 20.90718348211561 36.53719055756117 10-11 24.411344718179258 26.68153321452157 28.23435333319997 20.6727687340992 12-13 25.26635491214687 24.18632057591298 28.46773600650029 22.07958850543986 14-15 22.473726372019105 25.566331887961535 26.343847286580008 25.616094453439352 16-17 21.91514460067564 28.807957525411016 26.950293115590203 22.32660475832314 18-19 21.88955297021547 27.610961092184787 28.95576081808613 21.543725119513617 20-21 22.760501709237207 26.724535512869597 28.979905496769504 21.5350572811237 22-23 22.365427002282615 26.831573958905295 28.816695233856137 21.98630380495595 24-25 22.214581076917145 27.005215926084187 28.938839928839844 21.841363068158827 26-27 22.135724380363467 27.137982010387653 28.913977918592664 21.812315690656217 28-29 21.825759914694164 27.07898034604498 28.998821274605103 22.09643846465576 30-31 22.384242314434346 26.83985092879457 28.99929302723998 21.776613729531107 32-33 22.10749053723259 27.179082157468105 28.688262316697372 22.02516498860194 34-35 22.10023750961731 27.31744041051634 28.931000253341026 21.651321826525326 36-37 22.30609169992662 27.106328644123767 28.696011610934846 21.891568045014765 38-39 22.03625663044754 27.115682982570654 28.843357687407234 22.004702699574572 40-41 22.27589101476867 27.025553146506898 28.698765858351187 21.999789980373244 42-43 22.39056031881535 27.07174758567194 28.511858746041106 22.0258333494716 44-45 22.28420468788125 27.296411565095642 28.30087560799518 22.118508139027927 46-47 22.500886143954478 27.122443643472742 27.870170216131324 22.506499996441455 48-49 22.403281034874613 27.2725894485572 27.90733805397785 22.41679146259034 50-51 22.27573372748872 27.499624058752943 27.881952082951056 22.342690130807277 52-53 22.42408316831252 27.484021376681824 27.832790007522558 22.2591054474831 54-55 22.38600393286209 27.40667194391664 27.707083303587716 22.500240819633564 56-57 22.574628888746915 27.62400736265387 27.45202792421163 22.34933582438758 58-59 22.322970930753737 27.8015148362865 27.726736310901472 22.148777922058294 60-61 22.602737994004325 27.824579232947528 27.429313958959174 22.14336881408898 62-63 22.386976887977273 27.973396000431567 27.377578735955815 22.26204837563535 64-65 22.367418837307817 27.83638174752399 27.446048361372398 22.35015105379579 66-67 22.512942315621668 27.744662614226144 27.299569218590804 22.442825851561388 68-69 22.485449353370598 27.600692340586846 27.45593114553766 22.457927160504894 70-71 22.52927220304406 27.331411651867686 27.450417830760284 22.688898314327965 72-73 22.572784453736563 27.40228054715445 27.418884096099976 22.606050903009013 74-75 22.38171984756313 27.55388928332401 27.408607618730628 22.655783250382232 76-77 22.558882794649417 27.473075866011786 27.280048574145678 22.68799276519312 78-79 22.586645271945223 27.553236068357535 27.236906138120816 22.623212521576427 80-81 22.535205314023585 27.473183445453735 27.274473984816 22.71713725570668 82-83 22.57276496023277 27.456146007721642 27.378108511077002 22.59298052096858 84-85 22.688302770878526 27.415061902038502 27.31911848349997 22.577516843583 86-87 22.56089492783902 27.423293346603156 27.367612014758873 22.64819971079895 88-89 22.657139837253553 27.40798880420584 27.299110601481313 22.635760757059295 90-91 22.631006864387132 27.343022117538446 27.419677661778657 22.60629335629576 92-93 22.66910444415326 27.306043353404704 27.384639006311307 22.640213196130734 94-95 22.525566227018462 27.40814121231603 27.395273217299724 22.67101934336578 96-97 22.579713393119185 27.47926293179758 27.518847699315756 22.422175975767473 98-99 23.692437420119365 29.411262885140772 27.657512759665437 19.23878693507443 100 22.642304793224294 30.484562995140234 21.497375031151723 25.37575718048375 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1575.0 1 1427.5 2 1835.0 3 2636.5 4 3802.5 5 6301.5 6 8425.5 7 10253.0 8 11947.5 9 12464.0 10 11876.5 11 11079.0 12 12219.5 13 16009.5 14 24361.5 15 35519.5 16 44557.5 17 50113.5 18 51370.0 19 48325.5 20 42988.5 21 37791.0 22 34713.5 23 35405.0 24 40179.0 25 49175.5 26 62147.0 27 76246.5 28 89456.0 29 103954.5 30 117864.5 31 131270.0 32 147756.5 33 165487.0 34 183711.0 35 200639.5 36 218917.5 37 234996.0 38 244919.5 39 254541.0 40 267940.0 41 279729.0 42 287135.5 43 295635.5 44 303818.5 45 314085.5 46 325792.5 47 335236.0 48 336389.5 49 331447.0 50 325443.5 51 315039.0 52 301996.0 53 286518.0 54 270797.5 55 253655.5 56 233472.0 57 212428.0 58 191393.5 59 168844.5 60 143170.0 61 117762.0 62 93436.0 63 71849.0 64 54066.0 65 39757.0 66 29583.0 67 22454.0 68 17182.5 69 12465.0 70 8599.5 71 5843.5 72 3854.5 73 2510.0 74 1637.5 75 1074.0 76 693.5 77 447.5 78 301.0 79 207.0 80 145.5 81 104.5 82 74.5 83 51.0 84 34.0 85 27.0 86 22.0 87 17.0 88 15.0 89 13.0 90 10.5 91 8.5 92 6.5 93 3.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0010957830319016843 4 0.010397197139904352 5 0.011378305203351211 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 3.822583940598575E-5 22-23 0.0 24-25 0.0057990316891591565 26-27 0.045195939377519964 28-29 0.08028311597217541 30-31 0.07251653838642753 32-33 0.033368234489719296 34-35 0.0032315806475254074 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.3979137876000588E-4 56-57 5.24914406144648E-4 58-59 6.965212386042161E-6 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 1.1767484219987527E-4 72-73 0.012551241630836532 74-75 0.02793356688608057 76-77 0.002263844427403565 78-79 0.0 80-81 0.0 82-83 0.007550194046970742 84-85 0.04350550672870549 86-87 0.036587824979983495 88-89 0.009721179620378342 90-91 1.2938992730146068E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 108.0 20-21 389.0 22-23 916.0 24-25 2474.0 26-27 3391.0 28-29 5858.0 30-31 13852.0 32-33 17734.0 34-35 24672.0 36-37 35427.0 38-39 42825.0 40-41 45777.0 42-43 54257.0 44-45 66634.0 46-47 65668.0 48-49 57290.0 50-51 50394.0 52-53 49254.0 54-55 56101.0 56-57 61583.0 58-59 60413.0 60-61 60479.0 62-63 61589.0 64-65 64639.0 66-67 70686.0 68-69 62532.0 70-71 58803.0 72-73 56563.0 74-75 58024.0 76-77 57544.0 78-79 60924.0 80-81 62705.0 82-83 60599.0 84-85 61884.0 86-87 64764.0 88-89 69972.0 90-91 73595.0 92-93 77273.0 94-95 87862.0 96-97 253716.0 98-99 480656.0 100-101 5228443.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.50388588596137 #Duplication Level Percentage of deduplicated Percentage of total 1 90.1551133405895 77.08612523109677 2 6.91164707210665 11.819453650748917 3 1.6565809882976839 4.249323353527747 4 0.5706567377867677 1.9517347435109904 5 0.2636690633965238 1.1272364754157342 6 0.1445155254677498 0.7413983399006533 7 0.08781585280990307 0.5256017660345433 8 0.053038804156882 0.3628019086526313 9 0.034353065744307874 0.2643588551910806 >10 0.12023193677008401 1.5549607063852056 >50 0.0017414786330912629 0.101817317227819 >100 4.706788457109896E-4 0.07478816005196288 >500 1.1818255138087758E-4 0.06738054839569521 >1k 4.7272843760112984E-5 0.07301894386014465 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2741663161647492E-5 0.0 1.2741663161647492E-5 0.0 3 0.0 1.2741663161647492E-5 0.0 2.5483326323294985E-5 0.0 4 0.0 5.096665264658997E-5 0.0 7.644997896988495E-5 0.0 5 0.0 7.644997896988495E-5 0.0 7.644997896988495E-5 0.0 6 0.0 7.644997896988495E-5 0.0 7.644997896988495E-5 1.2741663161647492E-5 7 0.0 7.644997896988495E-5 0.0 7.644997896988495E-5 1.2741663161647492E-5 8 0.0 8.919164213153244E-5 0.0 1.1467496845482743E-4 1.2741663161647492E-5 9 0.0 1.656416211014174E-4 0.0 1.1467496845482743E-4 2.5483326323294985E-5 10-11 0.0 1.656416211014174E-4 0.0 1.3378746319729867E-4 2.5483326323294985E-5 12-13 0.0 1.7201245268224114E-4 0.0 1.4652912635894615E-4 2.5483326323294985E-5 14-15 0.0 3.057999158795398E-4 0.0 1.528999579397699E-4 3.185415790411873E-5 16-17 6.370831580823746E-6 3.057999158795398E-4 0.0 1.7838328426306489E-4 3.8224989484942474E-5 18-19 1.2741663161647492E-5 3.376540737836585E-4 0.0 2.0386661058635988E-4 3.8224989484942474E-5 20-21 1.2741663161647492E-5 3.6950823168777725E-4 0.0 2.1660827374800736E-4 3.8224989484942474E-5 22-23 1.2741663161647492E-5 4.5869987381930974E-4 0.0 2.6757492639459734E-4 5.096665264658997E-5 24-25 1.2741663161647492E-5 5.03295694885076E-4 0.0 2.803165895562448E-4 6.370831580823746E-5 26-27 1.2741663161647492E-5 5.351498527891947E-4 0.0 3.3765407378365855E-4 6.370831580823746E-5 28-29 1.2741663161647492E-5 5.351498527891947E-4 0.0 4.969248633042522E-4 7.00791473890612E-5 30-31 1.2741663161647492E-5 5.861165054357846E-4 0.0 9.683664002852094E-4 7.644997896988495E-5 32-33 1.2741663161647492E-5 5.988581685974321E-4 0.0 0.0019112494742471236 8.919164213153244E-5 34-35 1.2741663161647492E-5 7.390164633755545E-4 0.0 0.003115336643022812 8.919164213153244E-5 36-37 1.2741663161647492E-5 8.664330949920294E-4 0.0 0.005294161043664532 8.919164213153244E-5 38-39 1.2741663161647492E-5 8.982872528961481E-4 0.0 0.008377643528783226 1.1467496845482743E-4 40-41 1.2741663161647492E-5 9.556247371235619E-4 0.0 0.011766925929781458 1.1467496845482743E-4 42-43 1.2741663161647492E-5 0.0010129622213509756 0.0 0.014780329267511091 1.1467496845482743E-4 44-45 1.2741663161647492E-5 0.0011722330108715692 0.0 0.0185391199001971 1.2741663161647493E-4 46-47 1.2741663161647492E-5 0.0012741663161647493 0.0 0.022794835396187364 1.5927078952059364E-4 48-49 1.2741663161647492E-5 0.0012805371477455731 0.0 0.026808459292106325 2.1660827374800736E-4 50-51 1.2741663161647492E-5 0.001458920432008638 0.0 0.030599104082696452 2.229791053288311E-4 52-53 1.2741663161647492E-5 0.0014652912635894615 0.0 0.03464458213651953 2.357207684904786E-4 54-55 1.2741663161647492E-5 0.0014652912635894615 0.0 0.038760139337731675 2.4209160007130235E-4 56-57 1.2741663161647492E-5 0.0014907745899127565 0.0 0.04328342976011653 2.484624316521261E-4 58-59 1.2741663161647492E-5 0.0014971454214935801 0.0 0.04753914525610679 2.5483326323294986E-4 60-61 1.2741663161647492E-5 0.001579966232044289 0.0 0.05212614399429989 2.6757492639459734E-4 62-63 1.2741663161647492E-5 0.0016500453794333503 0.0 0.056451938637679215 2.930582527178923E-4 64-65 1.2741663161647492E-5 0.0018985078110854764 0.0 0.060809587438962656 2.930582527178923E-4 66-67 2.5483326323294985E-5 0.0019176203058279477 0.0 0.06517997790340774 2.9942908429871605E-4 68-69 2.5483326323294985E-5 0.002000441116378656 0.0 0.06978608913634332 3.185415790411873E-4 70-71 2.5483326323294985E-5 0.0020322952742827752 0.0 0.07416285043236923 3.2491241062201107E-4 72-73 2.5483326323294985E-5 0.0020450369374444225 0.0 0.07791527023347442 3.8224989484942474E-4 74-75 2.5483326323294985E-5 0.002089632758510189 0.0 0.08087770691855745 3.8224989484942474E-4 76-77 2.5483326323294985E-5 0.0021724535690608973 0.0 0.08369361447728155 3.8224989484942474E-4 78-79 2.5483326323294985E-5 0.0022170493901266636 0.0 0.08563034727785196 3.8224989484942474E-4 80-81 2.5483326323294985E-5 0.0022170493901266636 0.0 0.08630565542541929 4.01362389591896E-4 82-83 2.5483326323294985E-5 0.0022170493901266636 0.0 0.08664330949920294 4.714415369809572E-4 84-85 2.5483326323294985E-5 0.00226164521119243 0.0 0.08683443444662765 4.714415369809572E-4 86-87 2.5483326323294985E-5 0.0023253535270006676 0.0 0.08687903026769342 4.714415369809572E-4 88 2.5483326323294985E-5 0.002408174337551376 0.0 0.08688540109927424 4.714415369809572E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11640 0.0 52.61335 1 GTATCAA 21105 0.0 38.155582 1 CTTATAC 5930 0.0 37.580738 1 TCAACGC 26220 0.0 30.172422 4 ATCAACG 26290 0.0 30.076164 3 TATCAAC 26860 0.0 29.677248 2 CAACGCA 26835 0.0 29.413305 5 TATACAC 9095 0.0 28.838017 3 AACGCAG 27735 0.0 28.548271 6 TGGTATC 4945 0.0 25.4799 2 GTGGTAT 5270 0.0 25.45367 1 ACGCAGA 32130 0.0 24.563196 7 CGCAGAG 32470 0.0 24.292797 8 TTATACA 10085 0.0 23.924847 2 ACACATC 10840 0.0 21.501839 6 TACACAT 11770 0.0 21.33423 5 GCAGAGT 37035 0.0 21.22901 9 ACATCTC 11240 0.0 20.35546 8 GAGTACT 21780 0.0 20.124437 12-13 GTACATG 26150 0.0 19.355076 1 >>END_MODULE