##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138643_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7553923 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.75370969494924 33.0 33.0 33.0 33.0 33.0 2 32.765009651276564 33.0 33.0 33.0 33.0 33.0 3 32.762684237051396 33.0 33.0 33.0 33.0 33.0 4 36.69695600550866 37.0 37.0 37.0 37.0 37.0 5 36.70560210899688 37.0 37.0 37.0 37.0 37.0 6 36.71906637120871 37.0 37.0 37.0 37.0 37.0 7 36.70136788526968 37.0 37.0 37.0 37.0 37.0 8 36.693856556387985 37.0 37.0 37.0 37.0 37.0 9 36.69654469604734 37.0 37.0 37.0 37.0 37.0 10-11 36.66061091700299 37.0 37.0 37.0 37.0 37.0 12-13 36.63629984049348 37.0 37.0 37.0 37.0 37.0 14-15 38.817931292124634 40.0 37.0 40.0 37.0 40.0 16-17 38.74707737952849 40.0 37.0 40.0 37.0 40.0 18-19 38.777838945406245 40.0 37.0 40.0 37.0 40.0 20-21 38.82846680034299 40.0 37.0 40.0 37.0 40.0 22-23 38.85129506209938 40.0 37.0 40.0 37.0 40.0 24-25 38.85136266777111 40.0 37.0 40.0 37.0 40.0 26-27 38.71564835726753 40.0 37.0 40.0 37.0 40.0 28-29 38.574019575471844 40.0 37.0 40.0 37.0 40.0 30-31 38.540396545475375 40.0 37.0 40.0 37.0 40.0 32-33 38.202885432483136 40.0 37.0 40.0 37.0 40.0 34-35 38.304259010047666 40.0 37.0 40.0 37.0 40.0 36-37 38.27396955796682 40.0 37.0 40.0 37.0 40.0 38-39 38.24642946248634 40.0 37.0 40.0 37.0 40.0 40-41 38.25834401661777 40.0 37.0 40.0 37.0 40.0 42-43 38.007986713837056 40.0 37.0 40.0 33.0 40.0 44-45 37.914578322302944 40.0 37.0 40.0 35.0 40.0 46-47 37.93152425747909 40.0 37.0 40.0 33.0 40.0 48-49 37.8330170848903 40.0 37.0 40.0 33.0 40.0 50-51 37.80183931557842 40.0 37.0 40.0 33.0 40.0 52-53 37.80496158081573 40.0 37.0 40.0 33.0 40.0 54-55 37.75905462710706 40.0 37.0 40.0 33.0 40.0 56-57 37.608210812954184 40.0 37.0 40.0 33.0 40.0 58-59 37.49629766348535 40.0 37.0 40.0 33.0 40.0 60-61 37.24138475108086 37.0 37.0 40.0 33.0 40.0 62-63 37.04810387642273 37.0 37.0 40.0 33.0 40.0 64-65 36.923045507712935 37.0 37.0 40.0 33.0 40.0 66-67 36.72043760842013 37.0 37.0 40.0 33.0 40.0 68-69 36.481913653109444 37.0 37.0 40.0 33.0 40.0 70-71 36.05440994368303 37.0 37.0 38.5 33.0 40.0 72-73 35.97720319634992 37.0 37.0 37.0 33.0 40.0 74-75 35.76436128157287 37.0 37.0 37.0 33.0 40.0 76-77 33.706634711574345 35.0 33.0 37.0 27.0 37.0 78-79 35.16055066351621 37.0 33.0 37.0 33.0 37.0 80-81 35.49769190146421 37.0 35.0 37.0 33.0 37.0 82-83 35.51882217636809 37.0 37.0 37.0 33.0 37.0 84-85 35.43172784454498 37.0 33.0 37.0 33.0 37.0 86-87 35.00300193304538 37.0 33.0 37.0 33.0 37.0 88-89 34.93645217444552 37.0 33.0 37.0 33.0 37.0 90-91 35.12025565921526 37.0 33.0 37.0 33.0 37.0 92-93 35.12337025508578 37.0 33.0 37.0 33.0 37.0 94-95 35.10754738757071 37.0 33.0 37.0 33.0 37.0 96-97 35.068183524206745 37.0 33.0 37.0 33.0 37.0 98-99 35.03932606048245 37.0 33.0 37.0 33.0 37.0 100 34.987591050504726 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 2.0 19 14.0 20 54.0 21 319.0 22 1088.0 23 2945.0 24 6573.0 25 12366.0 26 20887.0 27 32779.0 28 46507.0 29 64001.0 30 84665.0 31 110780.0 32 146805.0 33 198079.0 34 280452.0 35 436912.0 36 862524.0 37 2327666.0 38 2805104.0 39 113399.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.52742171187077 20.607186491045777 14.950523059342807 24.91486873774064 2 13.965816172603295 19.9388317831675 42.324233381780566 23.771118662448636 3 17.25318378268822 26.47600309723718 31.71146712481842 24.55934599525618 4 12.119057268229042 18.777646867082275 36.10855769792181 32.994738166766865 5 13.191939396394744 37.40058693921237 35.06839989291788 14.339073771475007 6 29.52878921323397 36.93621182000399 18.219738273742 15.315260693020038 7 25.643549715823156 33.14980838433222 21.282160276190265 19.92448162365436 8 25.132570189026282 35.5801746986301 21.127326820779082 18.15992829156453 9 24.677945486073924 16.424723948073076 19.86514821504005 39.03218235081295 10-11 24.06478726351857 26.116270976021333 27.73950700847758 22.079434751982514 12-13 25.239898526897882 23.549664194353053 27.593662259993913 23.616775018755156 14-15 22.830349210602225 25.305692154924003 24.70709590235431 27.156862732119457 16-17 22.503207935797068 29.12762679736079 25.281691380756726 23.087473886085416 18-19 22.33434865565879 27.022078461747622 27.16383923955804 23.479733643035548 20-21 23.316092459975206 26.264791484500094 27.146372896658683 23.27274315886602 22-23 23.134649413696412 27.663484598571088 26.90717716563345 22.29468882209905 24-25 23.43504378670674 27.830115563216317 27.07197011807801 21.662870531998934 26-27 23.200983381092772 28.147315799259538 27.07289071819129 21.5788101014564 28-29 22.299338364982585 26.777890852273313 27.622806031479808 23.299964751264294 30-31 23.799684771331723 26.89795255420748 27.652092254586197 21.650270419874598 32-33 23.839479893528196 26.788536453230392 28.15105692211466 21.220926731126752 34-35 22.727993236640753 27.30284486768314 28.736094237455873 21.233067658220232 36-37 23.122463332987632 26.441109771726868 27.8429223852046 22.5935045100809 38-39 22.575056930576366 25.79560653314324 28.51231522308874 23.117021313191657 40-41 22.091879484849223 25.78238127182789 29.169335057583595 22.956404185739295 42-43 22.77245595315867 25.516159888807465 29.445814408183534 22.265569749850332 44-45 21.953560979328614 26.34099306640245 28.817716896503313 22.887729057765615 46-47 23.367036656637772 25.329034769940108 27.492694628493602 23.811233944928524 48-49 22.784881480087908 25.590091127970222 28.103181129259667 23.521846262682207 50-51 22.297536576249865 26.46468699696836 28.168705164175524 23.069071262606254 52-53 22.07753824619587 27.22587626045093 28.709740030976548 21.986845462376646 54-55 21.983159744679067 27.471201241195615 27.512239607985677 23.03339940613964 56-57 23.071399984495436 27.8910480484692 26.494655394936277 22.54289657209908 58-59 21.748125094272694 28.818478437440024 27.86851479219006 21.564881676097222 60-61 22.927142549773542 29.455194144303675 25.942512181235998 21.67515112468678 62-63 22.017942347027436 29.965596257184853 25.995386060552217 22.021075335235498 64-65 22.23087189047012 29.19581367180659 26.33171932244549 22.241595115277796 66-67 22.54558333484961 28.341232348518147 26.478084661992696 22.635099654639543 68-69 22.645707749476333 27.550590104449196 26.92762509625133 22.87607704982314 70-71 22.772243609095746 27.189493509286685 26.995276910135008 23.042985971482562 72-73 22.86290277059284 27.152935449788856 26.899333001737887 23.084828777880414 74-75 22.764583365981935 27.338164404645788 26.913144549406965 22.984107679965312 76-77 23.026194138060717 27.175599845643166 26.703216167744802 23.094989848551315 78-79 22.8799014060569 27.15101596002265 26.7903589062085 23.178723727711954 80-81 22.874013750631157 27.195943905487102 26.878770319040733 23.05127202484101 82-83 22.899424787051245 27.103099185676598 26.97767648563258 23.01979954163958 84-85 23.02928535129805 27.157944037874763 26.903641224403202 22.90912938642398 86-87 22.932527881404923 27.14006997525352 26.880925449523613 23.046476693817937 88-89 23.00284725480055 27.050918426181465 26.891578707800416 23.054655611217566 90-91 22.955553703493702 27.13455214184122 26.929046144121077 22.980848010544 92-93 23.069715097481218 27.073810830631288 26.913339267841575 22.94313480404592 94-95 22.928172248485215 27.08084360726259 26.991704477457272 22.999279666794923 96-97 22.962609012749446 27.18670420740534 27.104693392532774 22.745993387312435 98-99 24.186147536515794 29.054706378845864 27.192206936307343 19.566939148331002 100 23.202032316900954 29.896139385071457 21.02348098498253 25.87834731304505 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1225.0 1 1194.5 2 1929.5 3 2846.0 4 4199.5 5 7461.5 6 10044.5 7 11627.0 8 12459.5 9 11981.0 10 10812.5 11 9680.5 12 10624.5 13 14362.5 14 23208.5 15 35548.0 16 45605.5 17 51542.5 18 52524.5 19 48654.0 20 42353.0 21 35866.5 22 31446.5 23 30999.5 24 35582.5 25 43809.0 26 54533.0 27 66956.5 28 78762.5 29 92918.0 30 106183.5 31 118071.5 32 133216.5 33 147192.0 34 161062.0 35 175207.5 36 189572.5 37 203962.5 38 213322.5 39 218054.0 40 226008.5 41 235462.5 42 244275.0 43 256792.5 44 270894.5 45 284565.5 46 307103.0 47 339873.0 48 398031.0 49 422497.5 50 399904.0 51 400479.0 52 393642.0 53 352192.5 54 307140.0 55 275992.5 56 250991.5 57 227388.0 58 200721.5 59 174407.5 60 147062.5 61 119509.5 62 95043.5 63 73551.5 64 54959.5 65 40890.5 66 31212.0 67 24087.5 68 18262.0 69 13232.0 70 9547.0 71 6836.0 72 4732.5 73 3181.5 74 2108.0 75 1387.0 76 908.0 77 544.0 78 334.0 79 221.5 80 148.5 81 100.0 82 74.5 83 52.0 84 33.5 85 25.0 86 19.5 87 15.0 88 11.0 89 7.0 90 3.5 91 2.0 92 2.0 93 2.0 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.001244386526047459 4 0.01127890766162165 5 0.011133287961765033 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 2.6476890903427262E-5 22-23 0.0 24-25 0.005991969569004581 26-27 0.04526295431845939 28-29 0.08124147039109551 30-31 0.0733149651111937 32-33 0.03336860675356386 34-35 0.0028898416393477633 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.3007389353365099E-4 56-57 3.590363552153291E-4 58-59 7.441356529529908E-6 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 1.4798686073992442E-4 72-73 0.01273204230092406 74-75 0.028610843434259653 76-77 0.0025037526684843683 78-79 0.0 80-81 0.0 82-83 0.0077064592245924615 84-85 0.045467310694434576 86-87 0.037998167545044294 88-89 0.009466255274490357 90-91 3.6433990399097025E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 98.0 20-21 408.0 22-23 992.0 24-25 2470.0 26-27 3006.0 28-29 7521.0 30-31 18200.0 32-33 22521.0 34-35 30632.0 36-37 43262.0 38-39 49566.0 40-41 53574.0 42-43 62750.0 44-45 74399.0 46-47 71817.0 48-49 65314.0 50-51 55583.0 52-53 55382.0 54-55 82107.0 56-57 110157.0 58-59 99564.0 60-61 107890.0 62-63 116734.0 64-65 116681.0 66-67 128653.0 68-69 77853.0 70-71 58885.0 72-73 55758.0 74-75 57385.0 76-77 55605.0 78-79 59107.0 80-81 60242.0 82-83 57848.0 84-85 58263.0 86-87 61074.0 88-89 65695.0 90-91 69082.0 92-93 72646.0 94-95 82025.0 96-97 230417.0 98-99 428675.0 100-101 4624082.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.38506069419971 #Duplication Level Percentage of deduplicated Percentage of total 1 88.19277304049145 71.77574186690175 2 7.6267015167622425 12.4139913167648 3 2.1454543833970385 5.238238056282143 4 0.8433042302917221 2.7452946386386867 5 0.4374556137035397 1.780117583614048 6 0.23553178584358128 1.1501261211775866 7 0.140173374129112 0.7985612992845978 8 0.09622381741974942 0.6264944976747117 9 0.06037795210816285 0.4422476967222885 >10 0.2175174679531561 2.7180932310623405 >50 0.003579255753294771 0.19175756863360954 >100 8.762923641001396E-4 0.10490657896237786 >500 3.126978280222043E-5 0.014429544281005372 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.3238154532419776E-5 0.0 2 0.0 1.3238154532419776E-5 0.0 2.6476309064839553E-5 0.0 3 0.0 1.3238154532419776E-5 0.0 3.971446359725933E-5 0.0 4 0.0 5.2952618129679105E-5 0.0 5.2952618129679105E-5 0.0 5 0.0 6.619077266209888E-5 0.0 6.619077266209888E-5 0.0 6 1.5885785438903732E-4 6.619077266209888E-5 0.0 6.619077266209888E-5 0.0 7 1.5885785438903732E-4 9.266708172693843E-5 0.0 1.9857231798629666E-4 0.0 8 1.5885785438903732E-4 1.0590523625935821E-4 0.0 2.3828678158355597E-4 0.0 9 1.5885785438903732E-4 2.780012451808153E-4 0.0 2.515249361159758E-4 0.0 10-11 1.5885785438903732E-4 2.780012451808153E-4 0.0 2.846203224470252E-4 0.0 12-13 1.5885785438903732E-4 2.780012451808153E-4 0.0 3.375729405767043E-4 0.0 14-15 1.5885785438903732E-4 4.037637132388032E-4 0.0 3.905255587063834E-4 0.0 16-17 3.2433478604428453E-4 4.2362094503743284E-4 0.0 4.699544859009021E-4 0.0 18-19 3.309538633104944E-4 4.500972541022724E-4 0.0 6.221932630237296E-4 6.619077266209888E-6 20-21 3.309538633104944E-4 4.964307949657416E-4 0.0 8.207655810100261E-4 1.3238154532419776E-5 22-23 3.309538633104944E-4 6.023360312250998E-4 0.0 0.0012708628351122985 1.3238154532419776E-5 24-25 3.309538633104944E-4 6.619077266209888E-4 0.0 0.0028329650699378322 1.3238154532419776E-5 26-27 3.375729405767043E-4 6.751458811534086E-4 0.0 0.006857364047793444 1.3238154532419776E-5 28-29 3.441920178429142E-4 6.883840356858284E-4 0.0 0.019393896389994975 1.3238154532419776E-5 30-31 3.508110951091241E-4 8.737181991397053E-4 0.0 0.02196871744655062 1.3238154532419776E-5 32-33 3.7066832690775374E-4 8.737181991397053E-4 0.0 0.026919787241675618 1.9857231798629665E-5 34-35 3.8390648144017353E-4 0.001012718821730113 0.0 0.03276443246773895 2.6476309064839553E-5 36-37 3.971446359725933E-4 0.0011517194443205207 0.0 0.04161413877266157 2.6476309064839553E-5 38-39 3.971446359725933E-4 0.0011781957533853601 0.0 0.06415209686410624 2.6476309064839553E-5 40-41 3.971446359725933E-4 0.0012708628351122985 0.0 0.08770939285454724 2.6476309064839553E-5 42-43 4.037637132388032E-4 0.0012841009896447184 0.0 0.10172197942711356 2.6476309064839553E-5 44-45 4.2362094503743284E-4 0.0015091496166958545 0.0 0.12067239764027247 2.6476309064839553E-5 46-47 4.3685909956985263E-4 0.0016415311620200524 0.0 0.14025162819372133 2.6476309064839553E-5 48-49 4.500972541022724E-4 0.0016481502392862624 0.0 0.15719646599521864 2.6476309064839553E-5 50-51 4.964307949657416E-4 0.00179376993914288 0.0 0.17532611862736752 2.6476309064839553E-5 52-53 5.162880267643713E-4 0.0018003890164090897 0.0 0.22146770625011666 2.6476309064839553E-5 54-55 5.295261812967911E-4 0.0018070080936752994 0.0 0.2791728218569345 2.6476309064839553E-5 56-57 5.427643358292108E-4 0.001840103480006349 0.0 0.33986976038807915 2.6476309064839553E-5 58-59 5.427643358292108E-4 0.001840103480006349 0.0 0.38542225013413556 3.309538633104944E-5 60-61 5.692406448940504E-4 0.0019129133299346577 0.0 0.41649219882172483 3.971446359725933E-5 62-63 6.883840356858284E-4 0.001952627793531917 0.0 0.4407114025387868 3.971446359725933E-5 64-65 6.883840356858284E-4 0.002197533652381683 0.0 0.44785338690902726 3.971446359725933E-5 66-67 7.14860344750668E-4 0.0022107718069141026 0.0 0.45392969983940795 3.971446359725933E-5 68-69 7.14860344750668E-4 0.002290200734108621 0.0 0.4602906330922356 3.971446359725933E-5 70-71 7.545748083479273E-4 0.002329915197705881 0.0 0.4655130850552752 3.971446359725933E-5 72-73 8.538609673410756E-4 0.0023431533522383008 0.0 0.46932567356061217 3.971446359725933E-5 74-75 8.604800446072855E-4 0.0024225822794328193 0.0 0.4723241155622052 3.971446359725933E-5 76-77 8.604800446072855E-4 0.0025814401338218563 0.0 0.4754417009545901 3.971446359725933E-5 78-79 8.604800446072855E-4 0.002641011829217745 0.0 0.47736785243905716 3.971446359725933E-5 80-81 8.670991218734953E-4 0.0026476309064839554 0.0 0.4778576641567567 3.971446359725933E-5 82-83 8.737181991397053E-4 0.0026476309064839554 0.0 0.47823495156093065 3.971446359725933E-5 84-85 8.737181991397053E-4 0.0026476309064839554 0.0 0.47842690480165073 3.971446359725933E-5 86-87 8.737181991397053E-4 0.0026873453700812146 0.0 0.4785592863469749 3.971446359725933E-5 88 8.737181991397053E-4 0.0029256321516647706 0.0 0.47857252450150733 3.971446359725933E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 20075 0.0 56.76019 1 TTATACA 23675 0.0 48.532997 2 TATACAC 24530 0.0 47.36653 3 GGTATCA 12065 0.0 47.290638 1 GTATCAA 22135 0.0 36.36487 1 TACACAT 35045 0.0 33.113487 5 ATACACA 36880 0.0 31.954985 4 ATCAACG 27315 0.0 29.149174 3 TCAACGC 27355 0.0 29.12116 4 TATCAAC 27515 0.0 29.073221 2 CAACGCA 27615 0.0 28.812687 5 AACGCAG 27935 0.0 28.55398 6 ACACATC 41340 0.0 27.786812 6 ACATCTC 42690 0.0 27.005417 8 CACATCT 42830 0.0 26.664946 7 CGCAGAG 32345 0.0 24.558102 8 ACGCAGA 32825 0.0 24.224302 7 CATCTCC 47745 0.0 23.989595 9 GCAGAGT 36555 0.0 21.616123 9 GTGGTAT 6100 0.0 21.459156 1 >>END_MODULE