##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138642_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7737993 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.7880436180286 33.0 33.0 33.0 33.0 33.0 2 32.78635235260616 33.0 33.0 33.0 33.0 33.0 3 32.78602229286069 33.0 33.0 33.0 33.0 33.0 4 36.72770174385012 37.0 37.0 37.0 37.0 37.0 5 36.74114851228219 37.0 37.0 37.0 37.0 37.0 6 36.750687290619155 37.0 37.0 37.0 37.0 37.0 7 36.737618527181404 37.0 37.0 37.0 37.0 37.0 8 36.73081870195541 37.0 37.0 37.0 37.0 37.0 9 36.72874490840196 37.0 37.0 37.0 37.0 37.0 10-11 36.70051207076563 37.0 37.0 37.0 37.0 37.0 12-13 36.67937810230637 37.0 37.0 37.0 37.0 37.0 14-15 38.92856067458319 40.0 40.0 40.0 37.0 40.0 16-17 38.87838429163738 40.0 40.0 40.0 37.0 40.0 18-19 38.90672768765751 40.0 40.0 40.0 37.0 40.0 20-21 38.94396770288035 40.0 40.0 40.0 37.0 40.0 22-23 38.969196004326676 40.0 40.0 40.0 37.0 40.0 24-25 38.97642458014557 40.0 40.0 40.0 37.0 40.0 26-27 38.88516892728173 40.0 40.0 40.0 37.0 40.0 28-29 38.81489295949326 40.0 38.5 40.0 37.0 40.0 30-31 38.759388922811404 40.0 37.0 40.0 37.0 40.0 32-33 38.43761596431047 40.0 37.0 40.0 37.0 40.0 34-35 38.5718284516651 40.0 37.0 40.0 37.0 40.0 36-37 38.545431497524376 40.0 37.0 40.0 37.0 40.0 38-39 38.57192625057566 40.0 37.0 40.0 37.0 40.0 40-41 38.546209908612425 40.0 37.0 40.0 37.0 40.0 42-43 38.250541732399064 40.0 37.0 40.0 37.0 40.0 44-45 38.155765830951225 40.0 37.0 40.0 37.0 40.0 46-47 38.185806651316135 40.0 37.0 40.0 37.0 40.0 48-49 38.060966861377686 40.0 37.0 40.0 37.0 40.0 50-51 38.15502449593124 40.0 37.0 40.0 37.0 40.0 52-53 38.152181212135524 40.0 37.0 40.0 37.0 40.0 54-55 38.0897600607205 40.0 37.0 40.0 37.0 40.0 56-57 37.967715419962566 40.0 37.0 40.0 35.0 40.0 58-59 37.84772782240043 40.0 37.0 40.0 33.0 40.0 60-61 37.603656323551306 40.0 37.0 40.0 33.0 40.0 62-63 37.41800217695165 37.0 37.0 40.0 33.0 40.0 64-65 37.25853041925181 37.0 37.0 40.0 33.0 40.0 66-67 37.02797630251648 37.0 37.0 40.0 33.0 40.0 68-69 36.76138379352976 37.0 37.0 40.0 33.0 40.0 70-71 36.313003500780255 37.0 37.0 40.0 33.0 40.0 72-73 36.206605294904435 37.0 37.0 37.0 33.0 40.0 74-75 35.974976676230604 37.0 37.0 37.0 33.0 40.0 76-77 33.939673896207765 35.0 33.0 37.0 27.0 37.0 78-79 35.34103467784265 37.0 33.0 37.0 33.0 37.0 80-81 35.64276201383308 37.0 37.0 37.0 33.0 37.0 82-83 35.64219567104548 37.0 37.0 37.0 33.0 37.0 84-85 35.53485862671994 37.0 37.0 37.0 33.0 37.0 86-87 35.10656224380436 37.0 33.0 37.0 33.0 37.0 88-89 35.0339048732371 37.0 33.0 37.0 33.0 37.0 90-91 35.20321727585977 37.0 33.0 37.0 33.0 37.0 92-93 35.19890554233223 37.0 33.0 37.0 33.0 37.0 94-95 35.171385438036424 37.0 33.0 37.0 33.0 37.0 96-97 35.130501561639136 37.0 33.0 37.0 33.0 37.0 98-99 35.09269492591689 37.0 33.0 37.0 33.0 37.0 100 35.037837011156086 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 23.0 21 120.0 22 530.0 23 1564.0 24 3868.0 25 8090.0 26 14850.0 27 24713.0 28 37838.0 29 53960.0 30 73329.0 31 99429.0 32 134549.0 33 183810.0 34 263781.0 35 409895.0 36 805092.0 37 2281008.0 38 3225264.0 39 116275.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.43878134808341 20.086397079966343 14.674968044039327 23.79985352791092 2 14.406216185514772 20.67572302016815 42.12845630643501 22.789604487882066 3 18.094796606776548 25.84290064491716 30.739388616513562 25.32291413179272 4 12.340552359339759 18.334102139806628 38.46333400585051 30.8620114950031 5 13.387422414536273 37.478307477220504 35.41898638419782 13.71528372404539 6 29.71628431299951 37.71722202385037 18.705147445855793 13.86134621729433 7 26.316901553154675 32.90534121703134 22.444773470330098 18.332983759483888 8 24.442216476546307 36.44331288487855 21.149502202961415 17.96496843561373 9 25.334954425520934 17.005947149344795 20.997356808154258 36.66174161698001 10-11 24.0408720969378 26.834180387601798 28.591703300842997 20.533244214617408 12-13 24.998058282037732 24.316686510313463 28.699192413329914 21.98606279431889 14-15 22.212575017837313 25.782473569050783 26.461305922608098 25.543645490503803 16-17 21.6722992641632 29.13087411684141 27.075063262528154 22.121763356467238 18-19 21.608632884521864 27.84360233977984 29.068519446838476 21.47924532885982 20-21 22.394433890953135 26.904846307665885 29.110426193186743 21.590293608194237 22-23 21.994363634131226 27.126371045028243 29.000737341602417 21.878527979238115 24-25 21.85271107932082 27.30669089462615 29.16556324608549 21.67503477996754 26-27 21.76635626156823 27.395621124450635 29.124719718523494 21.713302895457637 28-29 21.42732518938142 27.18983162046119 29.20558628497263 22.177256905184763 30-31 21.788816802144698 27.0207387929278 29.274537561001406 21.91590684392609 32-33 21.715276241065855 27.211133626352424 29.08355250478616 21.990037627795562 34-35 21.74086519854654 27.602971723882508 29.206918683746352 21.4492443938246 36-37 21.86102260993427 27.394980750436133 28.800506224046334 21.943490415583266 38-39 21.786814087088324 27.327160526654954 29.01279541976142 21.873229966495302 40-41 22.005588101891853 27.21910040382582 28.97137874275896 21.803932751523362 42-43 22.1516824133269 27.208806431071636 28.80803963718206 21.831471518419406 44-45 22.02212649727308 27.511896647070404 28.525990922730653 21.939985932925865 46-47 22.288482519742022 27.292499582675738 28.047881848656214 22.371136048926022 48-49 22.16695611017926 27.431975091376742 28.11402289882935 22.287045899614647 50-51 21.990979316359464 27.705306651914153 28.10240006200784 22.201313969718544 52-53 22.132646980217825 27.718022523935765 28.161442105140843 21.98788839070557 54-55 22.105243590102415 27.69479152785535 27.89747867823359 22.30248620380864 56-57 22.319888147641073 27.895581730781377 27.62959838177266 22.154931739804894 58-59 21.971355268722455 28.12194165702075 28.014595012250705 21.892108062006095 60-61 22.36490684525918 28.281219000052864 27.49050966882666 21.863364485861293 62-63 22.040822024142997 28.456972789874346 27.48663195491281 22.015573231069848 64-65 22.09267619323442 28.28803406116404 27.507042093958688 22.112247651642853 66-67 22.18331206881384 28.137446008065524 27.448186489530247 22.231055433590388 68-69 22.197511992444834 27.97261334469503 27.560178628083726 22.269696034776405 70-71 22.23250291452394 27.673804746181517 27.610603156207418 22.48308918308712 72-73 22.26170242492394 27.728923005089246 27.584423503885695 22.424951066101116 74-75 22.153732866140164 27.8744108431597 27.538684117133737 22.433172173566398 76-77 22.29451713702338 27.796909463206237 27.41581537407661 22.492758025693764 78-79 22.30164922271503 27.869237470180785 27.363751213549055 22.46536209355513 80-81 22.252500210952135 27.88894669963436 27.389628440894015 22.46892464851949 82-83 22.300075727285034 27.826361512824484 27.505753357708873 22.367809402181614 84-85 22.43190532616388 27.79819852995937 27.42940486901439 22.340491274862355 86-87 22.294877226736283 27.836236669514413 27.488744282224847 22.38014182152445 88-89 22.365549371420606 27.86062661790477 27.439293890223794 22.334530120450832 90-91 22.308533619166184 27.796437940107072 27.539523999678718 22.355504441048033 92-93 22.316402253108002 27.803015501047785 27.550553186577158 22.330029059267055 94-95 22.140643313126674 27.959417934238278 27.547983281993915 22.351955470641133 96-97 22.27759511006142 27.983342761010338 27.662118045590855 22.076944083337388 98-99 23.364304454147288 29.912833912552323 27.848123079314778 18.874738553985612 100 22.328309531969406 30.942259225387165 21.70560813121267 25.023823111430755 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2032.0 1 1784.5 2 2140.0 3 2965.5 4 4125.5 5 6654.0 6 8739.0 7 10149.5 8 11304.5 9 11492.0 10 10782.5 11 10213.5 12 11487.0 13 15205.0 14 23450.5 15 34645.5 16 43907.0 17 49466.0 18 50639.5 19 47903.0 20 43007.5 21 37524.0 22 34003.5 23 34640.0 24 39582.5 25 48561.5 26 60826.5 27 74769.5 28 89546.5 29 105877.5 30 121857.5 31 137604.0 32 155176.5 33 172437.0 34 190204.5 35 207656.5 36 225524.5 37 242471.5 38 253233.0 39 262905.0 40 275966.5 41 287321.0 42 294985.5 43 302586.0 44 309843.0 45 319712.0 46 334090.0 47 345930.0 48 344215.5 49 335034.5 50 325954.5 51 308400.5 52 287385.0 53 268651.0 54 251147.5 55 233604.5 56 214100.0 57 192453.0 58 170961.0 59 149416.0 60 124834.5 61 100496.0 62 78847.5 63 60640.0 64 45405.0 65 33413.0 66 25047.0 67 19089.0 68 14490.0 69 10525.5 70 7497.5 71 5379.5 72 3729.0 73 2465.0 74 1607.5 75 1045.0 76 679.0 77 406.0 78 256.0 79 178.5 80 128.0 81 89.0 82 67.0 83 49.0 84 28.0 85 16.0 86 12.0 87 8.0 88 4.0 89 3.0 90 2.0 91 1.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0012923247669001509 4 0.011527536920749348 5 0.011372457948721328 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.938527859973154E-5 22-23 0.0 24-25 0.005726578375237861 26-27 0.04580723204708867 28-29 0.08113711765354276 30-31 0.07394666476193079 32-33 0.034080396121661305 34-35 0.003077611573016725 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.8102007317666834E-4 56-57 4.631023224581471E-4 58-59 2.1223136019715443E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 2.2425114693249096E-4 72-73 0.012764063149411272 74-75 0.028758320225528412 76-77 0.0029166856774350807 78-79 0.0 80-81 0.0 82-83 0.007529759233789288 84-85 0.04557532492514124 86-87 0.03854921988363169 88-89 0.009516181217767969 90-91 8.960780050566495E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 92.0 20-21 432.0 22-23 1010.0 24-25 2273.0 26-27 3287.0 28-29 6399.0 30-31 14890.0 32-33 19183.0 34-35 26558.0 36-37 37727.0 38-39 43555.0 40-41 47397.0 42-43 55784.0 44-45 67137.0 46-47 66006.0 48-49 56968.0 50-51 48945.0 52-53 46458.0 54-55 52664.0 56-57 59104.0 58-59 58366.0 60-61 59948.0 62-63 63103.0 64-65 66357.0 66-67 72393.0 68-69 59298.0 70-71 53976.0 72-73 51513.0 74-75 53020.0 76-77 52043.0 78-79 54921.0 80-81 55543.0 82-83 54340.0 84-85 55044.0 86-87 57286.0 88-89 61020.0 90-91 64627.0 92-93 68766.0 94-95 84665.0 96-97 248176.0 98-99 476393.0 100-101 5211326.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.59789178662317 #Duplication Level Percentage of deduplicated Percentage of total 1 89.98491207016549 77.02518765810827 2 7.1000263849571335 12.1549458036346 3 1.644955459342971 4.224141582079639 4 0.6039020222297342 2.0677095979417475 5 0.2585042914267446 1.106371118196209 6 0.1343031272297572 0.6897638730730704 7 0.08145001242948147 0.48803645449705063 8 0.05068655460238537 0.34709297727134 9 0.03140847081836046 0.2419648997663997 >10 0.1073739605608867 1.3810840890187681 >50 0.0019150300975523643 0.10572781661402791 >100 4.4452841613473303E-4 0.06976437099857766 >500 7.085281579372219E-5 0.03551981089631591 >1k 4.7234907575617045E-5 0.06268994790399673 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 3.876974300700453E-5 0.0 2.584649533800302E-5 0.0 5 0.0 3.876974300700453E-5 0.0 2.584649533800302E-5 0.0 6 0.0 3.876974300700453E-5 0.0 2.584649533800302E-5 0.0 7 0.0 3.876974300700453E-5 0.0 2.584649533800302E-5 1.292324766900151E-5 8 0.0 5.169299067600604E-5 0.0 2.584649533800302E-5 1.292324766900151E-5 9 0.0 1.292324766900151E-4 0.0 3.876974300700453E-5 1.292324766900151E-5 10-11 0.0 1.292324766900151E-4 0.0 3.876974300700453E-5 1.292324766900151E-5 12-13 0.0 1.292324766900151E-4 0.0 5.169299067600604E-5 1.292324766900151E-5 14-15 0.0 2.584649533800302E-4 0.0 5.169299067600604E-5 1.292324766900151E-5 16-17 0.0 2.713882010490317E-4 0.0 8.400110984850982E-5 1.292324766900151E-5 18-19 0.0 2.843114487180332E-4 0.0 9.692435751751133E-5 1.292324766900151E-5 20-21 0.0 2.9723469638703474E-4 0.0 1.163092290210136E-4 1.292324766900151E-5 22-23 0.0 3.4892768706304075E-4 0.0 1.2277085285551437E-4 1.292324766900151E-5 24-25 0.0 4.135439254080483E-4 0.0 1.4861734819351734E-4 1.292324766900151E-5 26-27 0.0 4.264671730770498E-4 0.0 1.873870912005219E-4 1.292324766900151E-5 28-29 0.0 4.264671730770498E-4 0.0 4.135439254080483E-4 1.292324766900151E-5 30-31 0.0 4.652369160840544E-4 0.0 0.0015378664726111797 1.292324766900151E-5 32-33 0.0 4.846217875875566E-4 0.0 0.0039351289152109595 1.292324766900151E-5 34-35 0.0 5.621612736015657E-4 0.0 0.006571471439687268 1.292324766900151E-5 36-37 0.0 6.397007596155746E-4 0.0 0.010571216593243235 1.292324766900151E-5 38-39 0.0 6.59085631119077E-4 0.0 0.02293230298864318 1.292324766900151E-5 40-41 1.292324766900151E-5 8.529343461540996E-4 0.0 0.0359266285198242 1.292324766900151E-5 42-43 1.292324766900151E-5 8.723192176576019E-4 0.0 0.04359657601137659 1.292324766900151E-5 44-45 1.292324766900151E-5 9.563203275061117E-4 0.0 0.05345701398282474 1.292324766900151E-5 46-47 1.292324766900151E-5 0.0010080133181821177 0.0 0.0641380781812545 1.292324766900151E-5 48-49 1.292324766900151E-5 0.0010209365658511193 0.0 0.07349450949361158 1.292324766900151E-5 50-51 1.292324766900151E-5 0.001163092290210136 0.0 0.08415618882053783 1.292324766900151E-5 52-53 1.292324766900151E-5 0.001163092290210136 0.0 0.11164393661250405 1.292324766900151E-5 54-55 1.292324766900151E-5 0.001163092290210136 0.0 0.14873365742253838 1.292324766900151E-5 56-57 1.292324766900151E-5 0.001163092290210136 0.0 0.18791048273111643 1.292324766900151E-5 58-59 1.292324766900151E-5 0.001163092290210136 0.0 0.22462542935874974 1.292324766900151E-5 60-61 1.292324766900151E-5 0.0012277085285551433 0.0 0.23787821984331078 1.292324766900151E-5 62-63 1.292324766900151E-5 0.0012600166477276472 0.0 0.256591082468025 1.292324766900151E-5 64-65 1.292324766900151E-5 0.0014086339959211646 0.0 0.2621868487087027 1.292324766900151E-5 66-67 1.292324766900151E-5 0.0014344804912591676 0.0 0.2669296806032262 1.292324766900151E-5 68-69 1.292324766900151E-5 0.001447403738928169 0.0 0.2714140475443697 1.292324766900151E-5 70-71 1.292324766900151E-5 0.0014603269865971706 0.0 0.27561410303679523 1.292324766900151E-5 72-73 1.292324766900151E-5 0.0014603269865971706 0.0 0.27896768580690107 1.292324766900151E-5 74-75 1.292324766900151E-5 0.0014926351057696742 0.0 0.28178495379874346 1.292324766900151E-5 76-77 1.292324766900151E-5 0.0015895594632871857 0.0 0.28475730076261374 1.292324766900151E-5 78-79 1.292324766900151E-5 0.0016218675824596893 0.0 0.286760404151309 1.292324766900151E-5 80-81 1.292324766900151E-5 0.0016283292062941903 0.0 0.28741948978242804 1.292324766900151E-5 82-83 1.292324766900151E-5 0.0016283292062941903 0.0 0.28778780234099466 1.292324766900151E-5 84-85 1.292324766900151E-5 0.0016283292062941903 0.0 0.2879299580653536 1.292324766900151E-5 86-87 1.292324766900151E-5 0.0016412524539631919 0.0 0.2880074975513677 1.292324766900151E-5 88 1.292324766900151E-5 0.0017317151876462024 0.0 0.28802042079903667 1.292324766900151E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11480 0.0 52.39383 1 GTATCAA 20585 0.0 37.58563 1 CTTATAC 9100 0.0 34.88444 1 TCAACGC 24960 0.0 30.499659 4 ATCAACG 25110 0.0 30.368843 3 CAACGCA 25410 0.0 29.989367 5 TATCAAC 25775 0.0 29.751528 2 AACGCAG 26085 0.0 29.177473 6 TATACAC 12385 0.0 28.260574 3 TTATACA 12750 0.0 25.939528 2 ACGCAGA 29975 0.0 25.41955 7 CGCAGAG 30275 0.0 25.139368 8 GTGGTAT 5330 0.0 24.595133 1 TGGTATC 5125 0.0 24.074293 2 GCAGAGT 34870 0.0 21.691513 9 ACACATC 14840 0.0 21.588318 6 TACACAT 16165 0.0 21.569729 5 GAGTACT 20655 0.0 20.839724 12-13 GTACATG 25035 0.0 20.346476 1 TACATGG 24175 0.0 20.237392 2 >>END_MODULE