##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138640_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7694134 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.82819119084747 33.0 33.0 33.0 33.0 33.0 2 32.82542050866283 33.0 33.0 33.0 33.0 33.0 3 32.82144384280284 33.0 33.0 33.0 33.0 33.0 4 36.77538329849727 37.0 37.0 37.0 37.0 37.0 5 36.78891243640935 37.0 37.0 37.0 37.0 37.0 6 36.79553891315124 37.0 37.0 37.0 37.0 37.0 7 36.78187135810216 37.0 37.0 37.0 37.0 37.0 8 36.78117680300343 37.0 37.0 37.0 37.0 37.0 9 36.77776953195772 37.0 37.0 37.0 37.0 37.0 10-11 36.75664493236016 37.0 37.0 37.0 37.0 37.0 12-13 36.73981457822284 37.0 37.0 37.0 37.0 37.0 14-15 39.08017737928661 40.0 40.0 40.0 37.0 40.0 16-17 39.034578160453144 40.0 40.0 40.0 37.0 40.0 18-19 39.06903635938755 40.0 40.0 40.0 37.0 40.0 20-21 39.082987884513 40.0 40.0 40.0 37.0 40.0 22-23 39.11544960647342 40.0 40.0 40.0 37.0 40.0 24-25 39.11715470042344 40.0 40.0 40.0 37.0 40.0 26-27 39.03139153575963 40.0 40.0 40.0 37.0 40.0 28-29 38.96187172276176 40.0 40.0 40.0 37.0 40.0 30-31 38.88962057112032 40.0 40.0 40.0 37.0 40.0 32-33 38.85931139575298 40.0 40.0 40.0 37.0 40.0 34-35 38.84022553312151 40.0 40.0 40.0 37.0 40.0 36-37 38.80698011852343 40.0 37.0 40.0 37.0 40.0 38-39 38.763245399641065 40.0 37.0 40.0 37.0 40.0 40-41 38.7165347884195 40.0 37.0 40.0 37.0 40.0 42-43 38.64792010465423 40.0 37.0 40.0 37.0 40.0 44-45 38.56184087558628 40.0 37.0 40.0 37.0 40.0 46-47 38.47833452027241 40.0 37.0 40.0 37.0 40.0 48-49 38.429989617721745 40.0 37.0 40.0 37.0 40.0 50-51 38.379785887399265 40.0 37.0 40.0 37.0 40.0 52-53 38.306892772898365 40.0 37.0 40.0 37.0 40.0 54-55 38.23653108584651 40.0 37.0 40.0 37.0 40.0 56-57 38.130654529229126 40.0 37.0 40.0 37.0 40.0 58-59 38.007636521204546 40.0 37.0 40.0 37.0 40.0 60-61 37.83295417177194 40.0 37.0 40.0 33.0 40.0 62-63 37.63918651332771 38.5 37.0 40.0 33.0 40.0 64-65 37.40819591959173 37.0 37.0 40.0 33.0 40.0 66-67 37.1706472109435 37.0 37.0 40.0 33.0 40.0 68-69 36.92463250411771 37.0 37.0 40.0 33.0 40.0 70-71 36.66071639974032 37.0 37.0 40.0 33.0 40.0 72-73 36.41709285805683 37.0 37.0 37.0 33.0 40.0 74-75 36.17930513109947 37.0 37.0 37.0 33.0 40.0 76-77 34.55988606786028 35.0 33.0 37.0 30.0 37.0 78-79 35.80004369770876 37.0 37.0 37.0 33.0 37.0 80-81 35.91476782168485 37.0 37.0 37.0 33.0 37.0 82-83 35.85398066161749 37.0 37.0 37.0 33.0 37.0 84-85 35.736264064637396 37.0 37.0 37.0 33.0 37.0 86-87 35.62823453968272 37.0 37.0 37.0 33.0 37.0 88-89 35.558213193996195 37.0 37.0 37.0 33.0 37.0 90-91 35.497802296813006 37.0 35.0 37.0 33.0 37.0 92-93 35.428951402833064 37.0 33.0 37.0 33.0 37.0 94-95 35.38696965108376 37.0 33.0 37.0 33.0 37.0 96-97 35.35133162774379 37.0 33.0 37.0 33.0 37.0 98-99 35.30550563504311 37.0 33.0 37.0 33.0 37.0 100 35.251416949266876 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 0.0 16 0.0 17 0.0 18 2.0 19 7.0 20 34.0 21 119.0 22 418.0 23 1255.0 24 3073.0 25 6367.0 26 11754.0 27 18963.0 28 28984.0 29 41821.0 30 58052.0 31 79459.0 32 107536.0 33 147515.0 34 214191.0 35 333467.0 36 664325.0 37 2169987.0 38 3635881.0 39 170923.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.27809133555511 19.805282829750563 14.546211438480276 23.370414396214052 2 14.877242845003739 20.498720193851575 41.614481889709744 23.00955507143494 3 18.374977060034865 25.709020384206077 30.228635419098214 25.687367136660843 4 12.699480426702106 17.744145636504587 38.48432571157313 31.07204822522018 5 13.58552349357966 37.508235037190914 35.054557933844116 13.851683535385312 6 30.25537770142523 37.27189275256874 18.54431162029562 13.928417925710407 7 26.92769932622688 32.75399580433559 22.46093224538749 17.85737262405004 8 24.919259908816237 36.052431118619864 20.72728662215743 18.301022350406473 9 25.91342000456712 16.91049530856823 21.10994182190508 36.06614286495957 10-11 24.643302890657075 26.610087192410113 28.183688792486432 20.56292112444638 12-13 25.47999235261465 24.251049468471628 28.445388193835484 21.82356998507824 14-15 22.581620139551777 25.4444571308777 26.57317422423201 25.400748505338516 16-17 21.796949468257246 28.639785842045384 27.162075679992054 22.401189009705316 18-19 21.845129029465824 27.632485995175028 29.196593144855548 21.3257918305036 20-21 22.80457293178944 26.678054372450116 29.154734161947605 21.362638533812845 22-23 22.535036709394912 26.583036398481752 29.0002497573753 21.88167713474804 24-25 22.22322623323901 26.758847446203355 29.09644729184858 21.92147902870905 26-27 22.117051400727266 26.945103212373045 28.994900862980927 21.94294452391876 28-29 21.99703061450127 27.05227427638733 29.033484234217365 21.91721087489404 30-31 22.339894737171647 26.860439876944653 28.94556898487688 21.854096401006817 32-33 22.089523790350043 27.045225203059974 28.849387156357654 22.01586385023233 34-35 22.18005543835234 27.090311376166543 28.87363913821256 21.85599404726856 36-37 22.244745004439217 27.050913457499643 28.761015271237 21.94332626682414 38-39 22.15002766422399 27.14229893018399 28.770414804141275 21.937258601450747 40-41 22.381892819462603 27.068315469108217 28.588199650581664 21.96159206084751 42-43 22.2546696301292 27.16455209301617 28.427022443902374 22.153755832952253 44-45 22.37907761300182 27.29377022756121 28.201049625086267 22.126102534350707 46-47 22.45958885243605 27.25158094377783 27.842535295525 22.44629490826112 48-49 22.432358927867718 27.431271686160642 27.761101947807255 22.37526743816439 50-51 22.41164868895609 27.543113132084322 27.5940960088142 22.451142170145385 52-53 22.563404262789206 27.5026061200696 27.438701585572865 22.495288031568332 54-55 22.593141007453564 27.36390775923755 27.49007410738344 22.55287712592545 56-57 22.58087304484361 27.4952761841693 27.45825474709375 22.465596023893337 58-59 22.477205709088587 27.61001288496962 27.50535202531915 22.40742938062264 60-61 22.672653860181924 27.4850451513813 27.456379935081713 22.38592105335506 62-63 22.58682197949314 27.59646962612624 27.320517279207618 22.496191115173 64-65 22.56965467393538 27.53169681601544 27.361911159032143 22.536737351017038 66-67 22.70083539187471 27.51850729827324 27.230000328242365 22.550656981609695 68-69 22.58827517873574 27.44294727832531 27.344677302698965 22.62410024023999 70-71 22.581696745163693 27.251957270079053 27.38264535057542 22.783700634181834 72-73 22.695243039193556 27.283931129615556 27.28760422505164 22.733221606139246 74-75 22.482586826527154 27.462763825651454 27.29725146709291 22.757397880728483 76-77 22.640896844377682 27.348995129597046 27.244386335464426 22.76572169056084 78-79 22.62694485115079 27.346769122128006 27.175567225835866 22.85071880088534 80-81 22.64250750363717 27.34189858830239 27.231939995704728 22.783653912355714 82-83 22.636855208872156 27.309794383060083 27.37325504538304 22.680095362684725 84-85 22.829397566745456 27.300444416087643 27.219243844756612 22.65091417241029 86-87 22.634406516341237 27.28075307874095 27.33004151177668 22.754798893141132 88-89 22.66060397366519 27.26522451419066 27.285267237854903 22.788904274289248 90-91 22.737242871983714 27.296153907584632 27.313119913384163 22.65348330704749 92-93 22.81178928855446 27.177915313514216 27.325826723894288 22.684468674037035 94-95 22.608767854105853 27.245564179986676 27.384296820763314 22.761371145144157 96-97 22.73474052708063 27.33020660386257 27.412219422365926 22.52283344669087 98-99 23.83994294309214 29.282332519540898 27.55185504967254 19.32586948769442 100 22.751049763065527 30.265859673439166 21.33783459315608 25.645255970339225 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1508.0 1 1412.5 2 2104.5 3 3134.5 4 4376.0 5 7166.5 6 9554.5 7 11520.5 8 13331.5 9 13984.5 10 13200.0 11 11961.5 12 12736.5 13 16423.5 14 25327.0 15 37231.0 16 46765.0 17 52268.0 18 53063.5 19 49774.0 20 44453.0 21 38708.0 22 35239.0 23 36096.5 24 41161.0 25 50242.5 26 62949.0 27 77101.0 28 90212.0 29 105686.0 30 120789.5 31 134842.5 32 151542.5 33 167849.5 34 184802.0 35 200389.5 36 216494.5 37 233320.0 38 244792.0 39 252540.5 40 262933.0 41 273725.5 42 280515.5 43 288353.0 44 298284.0 45 307971.0 46 314698.0 47 318194.0 48 319787.0 49 319627.5 50 318091.0 51 313285.0 52 304194.0 53 290895.5 54 277216.0 55 261508.5 56 243160.0 57 222538.5 58 200473.0 59 177429.0 60 150688.5 61 124405.0 62 99018.0 63 76690.0 64 58635.0 65 44160.5 66 33711.5 67 26071.5 68 20021.0 69 14369.5 70 10077.0 71 7181.5 72 4841.5 73 3242.5 74 2157.5 75 1376.5 76 871.0 77 575.5 78 377.0 79 249.5 80 180.0 81 128.5 82 88.5 83 49.5 84 24.5 85 15.0 86 11.0 87 10.5 88 7.0 89 4.0 90 3.0 91 2.0 92 1.5 93 1.0 94 0.5 95 0.5 96 1.5 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0017935741696206487 4 0.01167122901680683 5 0.018117698496023075 6 1.2996914272613396E-5 7 1.2996914272613396E-5 8 1.2996914272613396E-5 9 1.2996914272613396E-5 10-11 1.2996914272613396E-5 12-13 1.2996914272613396E-5 14-15 6.498457136306698E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.00415383274277186 26-27 0.04370116622284838 28-29 0.09043912431136801 30-31 0.0873730328034649 32-33 0.03631020137623308 34-35 0.003127604082828136 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.1420339810783528E-4 56-57 2.880476983944725E-4 58-59 1.4532191674667243E-5 60-61 0.0 62-63 7.3948154061809424E-6 64-65 1.4918340361487797E-5 66-67 1.5056986931288194E-5 68-69 1.520265480920402E-5 70-71 2.3027378785797018E-5 72-73 0.011932261635446627 74-75 0.02478043045069965 76-77 0.005201751387857265 78-79 0.0 80-81 0.0 82-83 0.006289525149801355 84-85 0.04419842644397279 86-87 0.04161159006098328 88-89 0.01161956698138846 90-91 1.4442748223903037E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 99.0 20-21 390.0 22-23 940.0 24-25 3221.0 26-27 4198.0 28-29 7970.0 30-31 19700.0 32-33 24513.0 34-35 33285.0 36-37 48335.0 38-39 57992.0 40-41 58088.0 42-43 67885.0 44-45 80730.0 46-47 78789.0 48-49 68415.0 50-51 61622.0 52-53 57837.0 54-55 60841.0 56-57 62594.0 58-59 61344.0 60-61 59531.0 62-63 57931.0 64-65 60434.0 66-67 63823.0 68-69 63818.0 70-71 62127.0 72-73 58765.0 74-75 59776.0 76-77 59965.0 78-79 63638.0 80-81 64920.0 82-83 61418.0 84-85 62249.0 86-87 64723.0 88-89 68636.0 90-91 72250.0 92-93 73672.0 94-95 82539.0 96-97 238613.0 98-99 455394.0 100-101 4981124.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.49212594259548 #Duplication Level Percentage of deduplicated Percentage of total 1 88.38131120041497 73.79143565716771 2 7.9978496432613415 13.355149393702362 3 2.0185094199429567 5.055889281185781 4 0.7652695429989165 2.5557592425639206 5 0.3350509417522051 1.3987057712980164 6 0.18535189089409643 0.9285254050936869 7 0.09836717332258157 0.574901909656627 8 0.060763089865894265 0.40585916413955925 9 0.041369094520074 0.31085942848210396 >10 0.11395016838756324 1.3995077556422764 >50 0.00170517405663471 0.09210787630280108 >100 4.004631214450218E-4 0.06035003700824907 >500 7.66482784599088E-5 0.03410948069518806 >1k 2.554918283863469E-5 0.036839597061641964 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.5993828545226792E-5 0.0 0.0 0.0 3 0.0 3.899074281784019E-5 0.0 0.0 0.0 4 0.0 1.2996914272613396E-4 0.0 0.0 0.0 5 0.0 1.4296605699874737E-4 0.0 0.0 0.0 6 0.0 1.4296605699874737E-4 0.0 0.0 0.0 7 0.0 1.4296605699874737E-4 0.0 0.0 0.0 8 0.0 1.8195679981658754E-4 0.0 0.0 0.0 9 0.0 3.249228568153349E-4 0.0 2.5993828545226792E-5 0.0 10-11 0.0 3.249228568153349E-4 0.0 2.5993828545226792E-5 0.0 12-13 0.0 3.249228568153349E-4 0.0 3.899074281784019E-5 0.0 14-15 0.0 4.4189508526885544E-4 0.0 3.899074281784019E-5 0.0 16-17 0.0 4.6788891381408226E-4 0.0 3.899074281784019E-5 0.0 18-19 0.0 4.8738428522300233E-4 0.0 3.899074281784019E-5 0.0 20-21 0.0 5.198765709045358E-4 0.0 3.899074281784019E-5 0.0 22-23 0.0 6.433472564943631E-4 0.0 3.899074281784019E-5 0.0 24-25 0.0 7.798148563568038E-4 0.0 9.747685704460048E-5 0.0 26-27 0.0 8.253040563109507E-4 0.0 2.2094754263442772E-4 0.0 28-29 0.0 8.447994277198707E-4 0.0 5.913595994039095E-4 0.0 30-31 0.0 0.0010202577704001516 0.0 0.0012866945129887263 0.0 32-33 0.0 0.0010527500560816852 0.0 0.003028281025518921 0.0 34-35 0.0 0.0011892176559441256 0.0 0.005159774966227518 0.0 36-37 0.0 0.0013711744557607132 0.0 0.0082465421059732 0.0 38-39 0.0 0.0014361590271237804 0.0 0.013672753814789293 0.0 40-41 0.0 0.0015466327984409941 0.0 0.01873505192397221 0.0 42-43 0.0 0.0016246142840766744 0.0 0.023413941062113034 0.0 44-45 0.0 0.001806571083893262 0.0 0.02892463271370111 0.0 46-47 0.0 0.001962534055164623 0.0 0.03446781665097073 0.0 48-49 0.0 0.0019755309694372363 0.0 0.04008898207387602 0.0 50-51 0.0 0.002189980054935357 0.0 0.04556068298264626 0.0 52-53 0.0 0.002235469254889504 0.0 0.051038882348552805 0.0 54-55 0.0 0.002254964626298424 0.0 0.05614666965768987 0.0 56-57 0.0 0.002365438397615638 0.0 0.0615078967951429 0.0 58-59 0.0 0.002365438397615638 0.0 0.06682363473264177 0.0 60-61 0.0 0.002384933769024558 0.0 0.07270473844099934 0.0 62-63 0.0 0.0024499183403876254 0.0 0.07824142392113265 0.0 64-65 0.0 0.0027033581687035866 0.0 0.08395356774394623 0.0 66-67 0.0 0.0027358504543851195 0.0 0.08957473316685152 0.0 68-69 0.0 0.00277484119720296 0.0 0.09521539396116574 0.0 70-71 0.0 0.002807333482884493 0.0 0.10073908252702643 0.0 72-73 0.0 0.00283332731142972 0.0 0.10456017532317477 0.0 74-75 0.0 0.0028788165113838673 0.0 0.10796536686259947 0.0 76-77 0.0 0.0030412779397915347 0.0 0.11100014634525471 0.0 78-79 0.0 0.0031192594254272153 0.0 0.11309264954314546 0.0 80-81 0.0 0.0031192594254272153 0.0 0.11372299988536722 0.0 82-83 0.0 0.0031192594254272153 0.0 0.11421688262772653 0.0 84-85 0.0 0.0031322563396998285 0.0 0.11444432862749726 0.0 86-87 0.0 0.003210237825335509 0.0 0.11454830394167817 0.0 88 0.0 0.00340519153942471 0.0 0.11456779931308708 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12385 0.0 52.613 1 GTATCAA 22890 0.0 37.894638 1 ATCAACG 28290 0.0 30.153765 3 TCAACGC 28270 0.0 30.144632 4 TATCAAC 28660 0.0 29.926563 2 CAACGCA 28840 0.0 29.588161 5 AACGCAG 29175 0.0 29.316013 6 ACGCAGA 33680 0.0 25.382202 7 CGCAGAG 34050 0.0 25.106388 8 GTGGTAT 5535 0.0 23.804556 1 TGGTATC 5575 0.0 22.194527 2 GCAGAGT 38640 0.0 21.96015 9 GAGTACT 22460 0.0 20.440704 12-13 GTACATG 27620 0.0 19.907211 1 TACATGG 27110 0.0 19.8767 2 CAGAGTA 37690 0.0 19.612654 10-11 ACATGGG 27875 0.0 18.967607 3 AGAGTAC 35205 0.0 18.9525 10-11 GTACTTT 24520 0.0 18.586044 14-15 GGACCGA 1545 0.0 17.487503 6 >>END_MODULE