##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138639_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7662721 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.82497170391562 33.0 33.0 33.0 33.0 33.0 2 32.82503408384567 33.0 33.0 33.0 33.0 33.0 3 32.819875602935305 33.0 33.0 33.0 33.0 33.0 4 36.772339616697515 37.0 37.0 37.0 37.0 37.0 5 36.78523621047928 37.0 37.0 37.0 37.0 37.0 6 36.792943263887594 37.0 37.0 37.0 37.0 37.0 7 36.7776531339194 37.0 37.0 37.0 37.0 37.0 8 36.7775754852617 37.0 37.0 37.0 37.0 37.0 9 36.775808227912776 37.0 37.0 37.0 37.0 37.0 10-11 36.75399985201079 37.0 37.0 37.0 37.0 37.0 12-13 36.73770975088353 37.0 37.0 37.0 37.0 37.0 14-15 39.06693660124125 40.0 40.0 40.0 37.0 40.0 16-17 39.01840057859343 40.0 40.0 40.0 37.0 40.0 18-19 39.05700305413704 40.0 40.0 40.0 37.0 40.0 20-21 39.07681728811695 40.0 40.0 40.0 37.0 40.0 22-23 39.10727173903714 40.0 40.0 40.0 37.0 40.0 24-25 39.106476730557475 40.0 40.0 40.0 37.0 40.0 26-27 39.021540171244254 40.0 40.0 40.0 37.0 40.0 28-29 38.9524400303911 40.0 40.0 40.0 37.0 40.0 30-31 38.8814228162897 40.0 40.0 40.0 37.0 40.0 32-33 38.84554053186132 40.0 40.0 40.0 37.0 40.0 34-35 38.8174281172277 40.0 37.0 40.0 37.0 40.0 36-37 38.78673165307552 40.0 37.0 40.0 37.0 40.0 38-39 38.73414565351347 40.0 37.0 40.0 37.0 40.0 40-41 38.698902489204535 40.0 37.0 40.0 37.0 40.0 42-43 38.632862394476675 40.0 37.0 40.0 37.0 40.0 44-45 38.54743635745627 40.0 37.0 40.0 37.0 40.0 46-47 38.467695487504066 40.0 37.0 40.0 37.0 40.0 48-49 38.42949677854777 40.0 37.0 40.0 37.0 40.0 50-51 38.37470982067438 40.0 37.0 40.0 37.0 40.0 52-53 38.313490632026244 40.0 37.0 40.0 37.0 40.0 54-55 38.23447746637976 40.0 37.0 40.0 37.0 40.0 56-57 38.13036566603874 40.0 37.0 40.0 37.0 40.0 58-59 38.019461623668725 40.0 37.0 40.0 37.0 40.0 60-61 37.847478698991495 40.0 37.0 40.0 33.0 40.0 62-63 37.66443584182663 38.5 37.0 40.0 33.0 40.0 64-65 37.44984884654387 37.0 37.0 40.0 33.0 40.0 66-67 37.22242348249253 37.0 37.0 40.0 33.0 40.0 68-69 36.98682713769721 37.0 37.0 40.0 33.0 40.0 70-71 36.729271603313386 37.0 37.0 40.0 33.0 40.0 72-73 36.48248632895679 37.0 37.0 38.5 33.0 40.0 74-75 36.239253783134686 37.0 37.0 37.0 33.0 40.0 76-77 34.62849746836954 35.0 33.0 37.0 30.0 37.0 78-79 35.84985359474403 37.0 37.0 37.0 33.0 37.0 80-81 35.95193610754061 37.0 37.0 37.0 33.0 37.0 82-83 35.87907198734743 37.0 37.0 37.0 33.0 37.0 84-85 35.75449002562074 37.0 37.0 37.0 33.0 37.0 86-87 35.644440899034706 37.0 37.0 37.0 33.0 37.0 88-89 35.57003137643568 37.0 37.0 37.0 33.0 37.0 90-91 35.50361137935569 37.0 35.0 37.0 33.0 37.0 92-93 35.43452090340794 37.0 33.0 37.0 33.0 37.0 94-95 35.392241422726755 37.0 33.0 37.0 33.0 37.0 96-97 35.35572720514874 37.0 33.0 37.0 33.0 37.0 98-99 35.31457607488838 37.0 33.0 37.0 33.0 37.0 100 35.25642370521068 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 0.0 15 0.0 16 0.0 17 2.0 18 1.0 19 6.0 20 36.0 21 137.0 22 470.0 23 1326.0 24 3178.0 25 6657.0 26 12134.0 27 19729.0 28 29762.0 29 42568.0 30 58637.0 31 79612.0 32 107482.0 33 147112.0 34 212893.0 35 330321.0 36 654568.0 37 2113372.0 38 3674466.0 39 168250.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.37324065433153 20.33644445621862 14.78007616354556 23.510238725904284 2 14.407153803459632 20.60891946868482 42.33904640401236 22.64488032384319 3 17.967157233147628 26.155741480991363 30.8046517030187 25.07244958284231 4 12.30584139246814 18.36852344573269 38.6153523679356 30.710282793863563 5 13.209989230330866 37.68054140984119 35.422970238461176 13.686499121366772 6 29.415269066954153 37.83066093623923 18.80983269520057 13.94423730160605 7 26.193241278130834 33.05151003148881 22.619615147152036 18.135633543228312 8 24.365822532231043 36.526124336250795 21.056071335495577 18.051981796022588 9 25.267068969364797 17.102032032746592 21.316461867788217 36.314437130100394 10-11 24.081811147763307 26.862618383208787 28.536873520515755 20.518696948512154 12-13 25.069234544752444 24.4703415405572 28.67459874893005 21.785825165760308 14-15 22.211874867948346 25.843104557767404 26.581249663141854 25.363770911142396 16-17 21.49988887759322 29.134507180934815 27.210732323413577 22.15487161805839 18-19 21.481103122507005 27.837370041268628 29.426942465998696 21.25458437022567 20-21 22.25926385843806 26.798423496245988 29.383580089184868 21.558732556131087 22-23 22.042621012682382 27.06592366867744 29.275750554096398 21.615704764543782 24-25 21.923929444888163 27.25107474114332 29.33972982879539 21.485265985173125 26-27 21.728901442724172 27.304833461772343 29.398846635982416 21.56741845952107 28-29 21.391202837013942 27.2061658292854 29.660934978557265 21.741696355143393 30-31 21.840288415007947 27.038422488335666 29.25029998489518 21.870989111761208 32-33 21.826702119189367 27.206184332393242 29.428807496395788 21.538306052021603 34-35 21.80764719795116 27.550373939446267 29.33696146114753 21.305017401455043 36-37 21.759152182087266 27.376817388163836 29.039684847948642 21.82434558180025 38-39 21.70713778686657 27.260806976806425 29.267959021542268 21.76409621478474 40-41 21.821352453147842 27.182816446866077 29.297369011091885 21.698462088894196 42-43 21.931081958855103 27.198472207699066 29.10213249516539 21.76831333828045 44-45 21.796607357958766 27.51360650892538 28.799281755387224 21.89050437772863 46-47 22.174697723600538 27.345665134353304 28.23962668871529 22.240010453330875 48-49 22.0503647771687 27.526935248137445 28.200798044469526 22.221901930224327 50-51 21.934246650784566 27.68362336093097 28.20344566610087 22.1786843221836 52-53 21.997170728450083 27.777849778979007 28.26001912758868 21.96496036498223 54-55 22.027829631865988 27.80042068361833 27.970683188861617 22.201066495654064 56-57 22.242272994007426 28.030561148403795 27.627181321234207 22.099984536354572 58-59 21.851650204383194 28.293956596438953 28.063348919539038 21.791044279638815 60-61 22.25846804504142 28.369432975510378 27.574136461787273 21.797962517660928 62-63 21.992685361597218 28.554659355664892 27.521854056053535 21.930801226684352 64-65 21.989905714130174 28.44112295858361 27.57356963173871 21.995401695547503 66-67 22.15860541487579 28.207347928285394 27.496191037910815 22.137855618928 68-69 22.15679800439541 27.981121431817037 27.656262656458114 22.205817907329447 70-71 22.15411341644012 27.702468881137182 27.752137449469373 22.391280252953326 72-73 22.22919868167449 27.728696516451173 27.703382354335176 22.33872244753916 74-75 22.110906799316673 27.83953138360909 27.714097639289097 22.335464177785138 76-77 22.202875152838946 27.81274706489868 27.633249840730933 22.351127941531438 78-79 22.16857556006516 27.78598702662569 27.601113126734067 22.44432428657508 80-81 22.186164825196563 27.80316729789984 27.652807952302844 22.357859924600753 82-83 22.251115797854094 27.70820851175427 27.745674358734874 22.295001331656763 84-85 22.405216599551203 27.724960168011076 27.58141745910941 22.288405773328307 86-87 22.215348787040444 27.735746356082164 27.736845809562165 22.31205904731523 88-89 22.289134463577824 27.649622468414293 27.704151487795293 22.35709158021259 90-91 22.37509858345679 27.668620203063394 27.653761864626052 22.302519348853767 92-93 22.37874381216144 27.57044226358974 27.73221350905925 22.31860041518957 94-95 22.220298345750784 27.621284848616224 27.785151342699223 22.373265462933773 96-97 22.324092189429575 27.77333047282679 27.780472844578075 22.12210449316556 98-99 23.426230714371933 29.667630537306987 27.98565783570085 18.92048091262023 100 22.402486378715878 30.63702586147037 21.782260319037235 25.178227440776524 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1410.0 1 1350.0 2 2061.5 3 3085.5 4 4403.5 5 7148.5 6 9396.0 7 11161.5 8 12822.5 9 13382.5 10 12694.0 11 11755.5 12 12770.0 13 16659.0 14 25735.5 15 38052.5 16 48401.0 17 54742.5 18 55712.5 19 52051.5 20 46367.5 21 40261.0 22 36491.5 23 37429.0 24 42706.5 25 51857.5 26 64363.0 27 78390.5 28 93108.5 29 109777.0 30 126598.0 31 144022.5 32 163158.5 33 181292.5 34 198997.0 35 215060.5 36 231487.5 37 247914.0 38 259463.0 39 266509.5 40 274639.5 41 283569.0 42 289718.5 43 296069.5 44 303486.0 45 311799.0 46 318401.5 47 323331.5 48 332849.5 49 329097.0 50 314433.5 51 306533.0 52 293628.5 53 273331.5 54 252670.5 55 232169.5 56 212105.0 57 191723.0 58 170009.5 59 148703.5 60 125805.5 61 103622.5 62 82689.0 63 63961.0 64 48833.0 65 36599.5 66 27506.0 67 20942.5 68 15867.5 69 11404.0 70 7994.0 71 5744.5 72 3992.0 73 2660.0 74 1776.5 75 1162.0 76 760.5 77 451.5 78 281.5 79 193.0 80 135.5 81 95.5 82 68.0 83 44.5 84 27.5 85 19.0 86 13.5 87 9.5 88 7.0 89 5.0 90 4.0 91 3.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0019705793803532715 4 0.010635908576078915 5 0.018139770454907597 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.003968820476345928 26-27 0.04235516668384121 28-29 0.08819135007320202 30-31 0.08480180073153411 32-33 0.03569817868482402 34-35 0.0030114403831130784 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.2067788601874283E-4 56-57 3.3663218550352943E-4 58-59 1.4462693229716815E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 3.848485140036753E-5 72-73 0.01206511682614555 74-75 0.02522938117455392 76-77 0.005175482079537188 78-79 0.0 80-81 0.0 82-83 0.005921749222729631 84-85 0.043322647684458856 86-87 0.041262447734024724 88-89 0.010901247826695246 90-91 1.8743281704963877E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 155.0 20-21 680.0 22-23 1265.0 24-25 3097.0 26-27 4027.0 28-29 6725.0 30-31 15765.0 32-33 20335.0 34-35 28281.0 36-37 40906.0 38-39 49351.0 40-41 52047.0 42-43 61308.0 44-45 74313.0 46-47 72387.0 48-49 63410.0 50-51 56622.0 52-53 54133.0 54-55 60181.0 56-57 66848.0 58-59 65597.0 60-61 66528.0 62-63 66904.0 64-65 72557.0 66-67 80073.0 68-69 67648.0 70-71 61213.0 72-73 58250.0 74-75 59297.0 76-77 59472.0 78-79 63334.0 80-81 64390.0 82-83 61896.0 84-85 62518.0 86-87 64610.0 88-89 69256.0 90-91 72699.0 92-93 74943.0 94-95 82780.0 96-97 236494.0 98-99 451915.0 100-101 4968511.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.12103765765832 #Duplication Level Percentage of deduplicated Percentage of total 1 88.39760720114043 73.47700837012881 2 7.970704368090385 13.250664358762048 3 2.019049493878453 5.034764670400405 4 0.7594477596935549 2.525043433300489 5 0.32298509080600724 1.342342794787416 6 0.17519641123530252 0.8737504497465705 7 0.09961916522533779 0.579631386888385 8 0.05834393113329608 0.3879686477461221 9 0.04404655688435116 0.32950759621269077 >10 0.14971126511532548 1.8890914764926028 >50 0.0023477868999595944 0.13197889149823505 >100 8.86034948103079E-4 0.13642107412649399 >500 2.7467475044577256E-5 0.017146268956833632 >1k 2.7467474382578375E-5 0.024680580952887818 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.9150583715627906E-5 0.0 0.0 0.0 3 0.0 3.9150583715627906E-5 0.0 0.0 0.0 4 0.0 7.830116743125581E-5 0.0 0.0 0.0 5 0.0 7.830116743125581E-5 0.0 0.0 0.0 6 0.0 7.830116743125581E-5 0.0 0.0 0.0 7 0.0 7.830116743125581E-5 0.0 1.305019457187597E-5 0.0 8 0.0 9.135136200313179E-5 0.0 1.305019457187597E-5 0.0 9 0.0 2.2185330772189147E-4 0.0 1.305019457187597E-5 0.0 10-11 0.0 2.2185330772189147E-4 0.0 1.305019457187597E-5 0.0 12-13 0.0 2.3490350229376746E-4 0.0 1.305019457187597E-5 0.0 14-15 0.0 3.197297670109613E-4 0.0 3.9150583715627906E-5 0.0 16-17 0.0 3.3930505886877523E-4 0.0 3.9150583715627906E-5 0.0 18-19 0.0 3.523552534406512E-4 0.0 6.525097285937985E-5 1.305019457187597E-5 20-21 0.0 3.6540544801252716E-4 0.0 1.305019457187597E-4 1.305019457187597E-5 22-23 0.0 4.045560317281551E-4 0.0 1.9575291857813954E-4 1.305019457187597E-5 24-25 0.0 4.37181518157845E-4 0.0 3.327799615828372E-4 1.305019457187597E-5 26-27 0.0 4.5675681001565893E-4 0.0 4.5023171272972094E-4 1.305019457187597E-5 28-29 0.0 4.5675681001565893E-4 0.0 7.830116743125582E-4 1.305019457187597E-5 30-31 0.0 5.481081720187908E-4 0.0 0.0013115445544735348 1.9575291857813953E-5 32-33 0.0 5.611583665906666E-4 0.0 0.0027013902763783257 3.9150583715627906E-5 34-35 0.0 6.720850204516124E-4 0.0 0.004658919462159721 5.220077828750388E-5 36-37 0.0 7.895367715984962E-4 0.0 0.007621313629975566 5.220077828750388E-5 38-39 0.0 8.22162258028186E-4 0.0 0.01191482764412276 5.220077828750388E-5 40-41 0.0 9.918147874625736E-4 0.0 0.016404094576848095 5.220077828750388E-5 42-43 0.0 0.0010440155657500776 0.0 0.020834635633999985 5.220077828750388E-5 44-45 0.0 0.0011679924141828992 0.0 0.025924211517031615 5.220077828750388E-5 46-47 0.0 0.001252818678900093 0.0 0.031594521058511724 6.525097285937985E-5 48-49 0.0 0.001259343776186031 0.0 0.037356181961994965 6.525097285937985E-5 50-51 0.0 0.0014224712083344805 0.0 0.04301996640618913 6.525097285937985E-5 52-53 0.0 0.0014420465001922945 0.0 0.048709851239527056 7.830116743125581E-5 54-55 0.0 0.0014681468893360467 0.0 0.05471946583987594 9.135136200313179E-5 56-57 0.0 0.0015007723757657365 0.0 0.06083348199679983 9.135136200313179E-5 58-59 0.0 0.0015007723757657365 0.0 0.06676479542971747 9.135136200313179E-5 60-61 0.0 0.0015464480567673024 0.0 0.07223935205261943 9.135136200313179E-5 62-63 0.0 0.0015790735431969922 0.0 0.07749858046508545 9.135136200313179E-5 64-65 0.0 0.0018531276292063877 0.0 0.083332017438714 9.135136200313179E-5 66-67 0.0 0.0018792280183501397 0.0 0.08904147756390973 9.135136200313179E-5 68-69 0.0 0.0019966797694970233 0.0 0.09450298399223983 9.787645928906977E-5 70-71 0.0 0.002061930742356403 0.0 0.09931198069197614 1.0440155657500775E-4 72-73 0.0 0.002107606423357969 0.0 0.10330534023097018 1.1745175114688373E-4 74-75 0.0 0.002198957785361101 0.0 0.10617638303678288 1.1745175114688373E-4 76-77 0.0 0.0022903091473642327 0.0 0.10917140269102843 1.1745175114688373E-4 78-79 0.0 0.0023620852175095506 0.0 0.11112893187680982 1.1745175114688373E-4 80-81 0.0 0.0023751354120814267 0.0 0.1118662678701208 1.1745175114688373E-4 82-83 0.0 0.0023947107039392406 0.0 0.11234912506928021 1.1745175114688373E-4 84-85 0.0 0.002414285995797054 0.0 0.11255792818243024 1.1745175114688373E-4 86-87 0.0 0.0024730118713704964 0.0 0.11262317915528962 1.1745175114688373E-4 88 0.0 0.002570888330659566 0.0 0.11263622934986149 1.1745175114688373E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14030 0.0 45.935722 1 CTTATAC 7845 0.0 37.488678 1 GTATCAA 24065 0.0 34.588104 1 TATACAC 10560 0.0 30.615244 3 ATCAACG 28295 0.0 28.863958 3 TCAACGC 28370 0.0 28.80219 4 TTATACA 10765 0.0 28.65641 2 CAACGCA 28890 0.0 28.250975 5 AACGCAG 29710 0.0 27.565895 6 TATCAAC 30120 0.0 27.466295 2 ACGCAGA 33680 0.0 24.25379 7 CGCAGAG 34290 0.0 23.797651 8 ACACATC 13345 0.0 22.12617 6 TACACAT 14400 0.0 22.036749 5 ACATCTC 14015 0.0 20.917488 8 GCAGAGT 38880 0.0 20.857645 9 GAGTACT 22950 0.0 20.377245 12-13 GTACATG 25900 0.0 19.94914 1 TGGTATC 7445 0.0 19.83668 2 GTGGTAT 7820 0.0 19.643013 1 >>END_MODULE