##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138634_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7595767 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.82985023105633 33.0 33.0 33.0 33.0 33.0 2 32.8263531516962 33.0 33.0 33.0 33.0 33.0 3 32.8227425880757 33.0 33.0 33.0 33.0 33.0 4 36.77718708327941 37.0 37.0 37.0 37.0 37.0 5 36.7903051791873 37.0 37.0 37.0 37.0 37.0 6 36.795520978987376 37.0 37.0 37.0 37.0 37.0 7 36.78208270474858 37.0 37.0 37.0 37.0 37.0 8 36.77909274994875 37.0 37.0 37.0 37.0 37.0 9 36.779743770444774 37.0 37.0 37.0 37.0 37.0 10-11 36.759301463565166 37.0 37.0 37.0 37.0 37.0 12-13 36.74330485650758 37.0 37.0 37.0 37.0 37.0 14-15 39.08370609577676 40.0 40.0 40.0 37.0 40.0 16-17 39.03611228464486 40.0 40.0 40.0 37.0 40.0 18-19 39.06835339999239 40.0 40.0 40.0 37.0 40.0 20-21 39.08279328203587 40.0 40.0 40.0 37.0 40.0 22-23 39.116041003115214 40.0 40.0 40.0 37.0 40.0 24-25 39.11838758751312 40.0 40.0 40.0 37.0 40.0 26-27 39.0398261221618 40.0 40.0 40.0 37.0 40.0 28-29 38.9747386205596 40.0 40.0 40.0 37.0 40.0 30-31 38.902994908180034 40.0 40.0 40.0 37.0 40.0 32-33 38.87096685662016 40.0 40.0 40.0 37.0 40.0 34-35 38.851083182561005 40.0 40.0 40.0 37.0 40.0 36-37 38.8169785523209 40.0 37.0 40.0 37.0 40.0 38-39 38.77222980012148 40.0 37.0 40.0 37.0 40.0 40-41 38.73053861462725 40.0 37.0 40.0 37.0 40.0 42-43 38.66611282241452 40.0 37.0 40.0 37.0 40.0 44-45 38.58236005671482 40.0 37.0 40.0 37.0 40.0 46-47 38.50271738775733 40.0 37.0 40.0 37.0 40.0 48-49 38.46009922002196 40.0 37.0 40.0 37.0 40.0 50-51 38.412845715067476 40.0 37.0 40.0 37.0 40.0 52-53 38.34019519059239 40.0 37.0 40.0 37.0 40.0 54-55 38.27238109586841 40.0 37.0 40.0 37.0 40.0 56-57 38.169221029313334 40.0 37.0 40.0 37.0 40.0 58-59 38.04884922111631 40.0 37.0 40.0 37.0 40.0 60-61 37.881930540198184 40.0 37.0 40.0 35.0 40.0 62-63 37.695055017622046 38.5 37.0 40.0 33.0 40.0 64-65 37.46871049643022 37.0 37.0 40.0 33.0 40.0 66-67 37.232864742844576 37.0 37.0 40.0 33.0 40.0 68-69 36.98676177517683 37.0 37.0 40.0 33.0 40.0 70-71 36.72055244225645 37.0 37.0 40.0 33.0 40.0 72-73 36.468344703514894 37.0 37.0 38.5 33.0 40.0 74-75 36.22279630207663 37.0 37.0 37.0 33.0 40.0 76-77 34.601744055471094 35.0 33.0 37.0 30.0 37.0 78-79 35.82578021680372 37.0 37.0 37.0 33.0 37.0 80-81 35.932437863745264 37.0 37.0 37.0 33.0 37.0 82-83 35.85964603075418 37.0 37.0 37.0 33.0 37.0 84-85 35.733808494692994 37.0 37.0 37.0 33.0 37.0 86-87 35.619444636652396 37.0 37.0 37.0 33.0 37.0 88-89 35.54374912806818 37.0 37.0 37.0 33.0 37.0 90-91 35.47567522565802 37.0 33.0 37.0 33.0 37.0 92-93 35.40102079717483 37.0 33.0 37.0 33.0 37.0 94-95 35.35498112600553 37.0 33.0 37.0 33.0 37.0 96-97 35.31941042962311 37.0 33.0 37.0 33.0 37.0 98-99 35.27630876899515 37.0 33.0 37.0 33.0 37.0 100 35.21265056459163 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 3.0 20 14.0 21 84.0 22 377.0 23 1209.0 24 2849.0 25 6110.0 26 11272.0 27 18701.0 28 28387.0 29 41212.0 30 57457.0 31 78232.0 32 105049.0 33 144918.0 34 209445.0 35 327391.0 36 660116.0 37 2131116.0 38 3616445.0 39 155380.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.82021381119247 20.199948207995323 14.50380192020108 23.47603606061113 2 14.568943465485448 20.878326046599376 41.916333136600954 22.636397351314226 3 17.978445234752776 26.156280144804334 30.590382968941743 25.274891651501147 4 12.283275257424512 18.26840089032903 39.13944077277716 30.308883079469307 5 13.243867740927953 37.739405785399505 35.53447343236383 13.482253041308706 6 29.582489826241382 38.01838576670401 18.91657550843779 13.482548898616823 7 26.237560999435605 32.92629960871628 23.08692459892464 17.74921479292348 8 24.383251882265476 36.51575936965944 21.181652886403704 17.919335861671374 9 25.595821988747154 16.765193034488814 21.39161193333076 36.24737304343327 10-11 24.0369932358378 26.888515669319503 28.909397826447282 20.16509326839541 12-13 24.972678861792364 24.534059562385206 28.968825663030472 21.524435912791954 14-15 22.133189446174427 25.89754267080599 26.946771800662134 25.02249608235745 16-17 21.439217395688942 29.015404237649733 27.57196870309476 21.973409663566564 18-19 21.34501361087037 28.064539104477532 29.57746070936615 21.012986575285947 20-21 22.284959265757387 27.190914151829144 29.514735203560623 21.009391378852847 22-23 21.995348206756812 27.132340166939745 29.357093102552284 21.515218523751155 24-25 21.706085001696472 27.265960295616274 29.469485575238036 21.55846912744921 26-27 21.666367984819935 27.465047635362172 29.32508663969745 21.54349774012044 28-29 21.485532715048322 27.55103568377789 29.403041779709078 21.560389821464714 30-31 21.88728271633242 27.33264050679889 29.294389643169687 21.485687133698995 32-33 21.67781842062658 27.539505027527962 29.178688244874813 21.603988306970646 34-35 21.7524129540245 27.67308711945774 29.160489586526232 21.414010339991528 36-37 21.793076343236162 27.54459997266794 29.050423663580226 21.61190002051567 38-39 21.66056753506296 27.674080249194017 29.13495088154281 21.530401334200217 40-41 21.931400302333472 27.497197770910887 28.99826873980408 21.57313318695156 42-43 21.82381224961718 27.645017817558543 28.75486079537495 21.77630913744933 44-45 21.947383617874674 27.845988798103598 28.479148660239982 21.727478923781746 46-47 22.022069553693164 27.782043736645733 28.169361428884876 22.02652528077623 48-49 22.01073183481915 27.90277052978768 28.112096266494007 21.974401368899162 50-51 21.975240319631254 28.019336896850117 28.0053895956634 22.000033187855234 52-53 22.12540790555654 27.97389658233517 27.850164290202034 22.050531221906265 54-55 22.10975508038283 27.88489612078986 27.8911996819825 22.11414911684481 56-57 22.21020462908248 27.98642771616775 27.76574151144055 22.03762614330923 58-59 22.082695078319716 28.078884896759966 27.84786282423997 21.990557200680346 60-61 22.164676085296644 28.0632902769743 27.810966640992525 21.96106699673653 62-63 22.087683283277276 28.119149633643815 27.7291038679325 22.064063215146405 64-65 22.09300542105898 28.108201139900135 27.695840511907953 22.102952927132932 66-67 22.166262827594263 28.07370212402721 27.574677635742383 22.18535741263614 68-69 22.151865267264633 28.031365414534715 27.653608469495968 22.16316084870469 70-71 22.098909445221107 27.785627613670062 27.72314917361124 22.392313767497594 72-73 22.199437418790993 27.845900779911613 27.685771419190136 22.268890382107255 74-75 22.08264340995342 28.005147769510153 27.63895885138489 22.27324996915154 76-77 22.175347427571992 27.98498407078273 27.535367128222926 22.304301373422348 78-79 22.154424363791673 27.991781638372533 27.5029861231238 22.350807874711997 80-81 22.096148867720167 28.035315487213936 27.544212059035043 22.324323586030854 82-83 22.244561559949844 27.940423297246404 27.625765358062264 22.189249784741488 84-85 22.357943738719907 27.917186538625664 27.54547691486965 22.17939280778478 86-87 22.129608873777606 27.95138946679766 27.635563731481877 22.283437927942856 88-89 22.2026142188963 27.933934590181845 27.5663179986798 22.29713319224205 90-91 22.23623738169687 27.923120973431658 27.62964480420522 22.210996840666247 92-93 22.25767417331087 27.92823287617991 27.611200795026125 22.202892155483095 94-95 22.077866039297124 28.02085700811563 27.67984689217168 22.221430060415575 96-97 22.20340409417012 28.07206754797818 27.764287396905075 21.960240960946624 98-99 23.289500560217615 30.017460674810632 27.891867190778886 18.801171574192864 100 22.237918862105822 30.999724323158766 21.811107164205527 24.95124965052989 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1547.0 1 1455.0 2 2081.5 3 3046.0 4 4428.5 5 7433.5 6 9757.0 7 11059.0 8 11859.0 9 11613.5 10 10741.0 11 10122.5 12 11556.5 13 15804.5 14 25067.0 15 37112.0 16 46466.5 17 51879.5 18 52860.5 19 49692.0 20 44570.0 21 39406.5 22 36455.0 23 37516.0 24 42679.0 25 51897.0 26 64651.5 27 79283.5 28 94040.0 29 110105.5 30 125829.5 31 141027.5 32 158783.5 33 176629.0 34 194349.5 35 211238.0 36 228326.0 37 245643.5 38 256829.0 39 264989.5 40 276359.0 41 286515.5 42 293454.0 43 300071.5 44 306044.0 45 312105.0 46 316167.5 47 317217.5 48 314491.0 49 307680.0 50 299554.0 51 288942.5 52 274772.5 53 258993.5 54 243264.0 55 224912.0 56 205396.0 57 184466.5 58 162666.0 59 142094.0 60 119050.5 61 95921.5 62 75758.0 63 58126.5 64 42920.0 65 31140.0 66 22697.0 67 16873.0 68 12702.5 69 9137.0 70 6274.0 71 4292.5 72 2905.0 73 1896.0 74 1223.5 75 769.0 76 510.5 77 339.5 78 212.5 79 138.0 80 91.5 81 53.5 82 38.5 83 28.5 84 20.5 85 15.0 86 10.0 87 7.5 88 6.0 89 3.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.001816801384244672 4 0.010821816940935656 5 0.017628239518142144 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0042335960006410316 26-27 0.04162901494264963 28-29 0.08710018517766883 30-31 0.0831597485710381 32-33 0.03546791544745019 34-35 0.0033393879617449255 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 9.938037048860147E-5 56-57 3.1466225262272775E-4 58-59 1.4412304764614277E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 3.0259557405557654E-5 72-73 0.012875824571466929 74-75 0.027071617039983238 76-77 0.005591879938847635 78-79 0.0 80-81 0.0 82-83 0.006454350411464839 84-85 0.044286299509015456 86-87 0.041673247008980806 88-89 0.011474406295777248 90-91 2.153766502718095E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 76.0 20-21 355.0 22-23 952.0 24-25 1688.0 26-27 3111.0 28-29 5839.0 30-31 13655.0 32-33 18301.0 34-35 24831.0 36-37 35963.0 38-39 43247.0 40-41 46810.0 42-43 56220.0 44-45 67321.0 46-47 66162.0 48-49 57181.0 50-51 50012.0 52-53 47840.0 54-55 51376.0 56-57 53062.0 58-59 53254.0 60-61 52417.0 62-63 52096.0 64-65 54852.0 66-67 58530.0 68-69 57219.0 70-71 55054.0 72-73 53753.0 74-75 54212.0 76-77 55186.0 78-79 57400.0 80-81 58800.0 82-83 56305.0 84-85 57017.0 86-87 59490.0 88-89 63647.0 90-91 66585.0 92-93 68716.0 94-95 82716.0 96-97 241379.0 98-99 463943.0 100-101 5129194.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.4570282293311 #Duplication Level Percentage of deduplicated Percentage of total 1 88.36995803266421 73.75094082156862 2 8.079646520762914 13.486065755326546 3 1.9932069946379316 4.990413972551942 4 0.7431107397915009 2.4807125595319364 5 0.3235622143476358 1.3501770428377762 6 0.17211227156033396 0.8618387223735055 7 0.09139659316925829 0.5339381639334035 8 0.061149520522980796 0.40826858083971757 9 0.03897729491450716 0.2927636281784689 >10 0.12422200585874368 1.5704889452829152 >50 0.0020369656430206337 0.11526454971874886 >100 5.427628968952854E-4 0.09011655282710204 >500 2.6027791295144162E-5 0.012533606191236732 >1k 5.205543871538962E-5 0.05647709883802096 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.3165227422062841E-5 0.0 0.0 0.0 3 0.0 1.3165227422062841E-5 0.0 2.6330454844125682E-5 0.0 4 0.0 5.2660909688251363E-5 0.0 2.6330454844125682E-5 0.0 5 0.0 6.582613711031421E-5 0.0 2.6330454844125682E-5 0.0 6 0.0 6.582613711031421E-5 0.0 2.6330454844125682E-5 1.3165227422062841E-5 7 0.0 7.899136453237705E-5 0.0 2.6330454844125682E-5 1.3165227422062841E-5 8 0.0 1.3165227422062842E-4 0.0 2.6330454844125682E-5 1.3165227422062841E-5 9 0.0 3.028002307074453E-4 0.0 2.6330454844125682E-5 1.3165227422062841E-5 10-11 0.0 3.028002307074453E-4 0.0 3.2913068555157104E-5 1.3165227422062841E-5 12-13 0.0 3.028002307074453E-4 0.0 3.9495682266188526E-5 1.3165227422062841E-5 14-15 0.0 3.3571329926260245E-4 0.0 3.9495682266188526E-5 1.3165227422062841E-5 16-17 0.0 3.488785266846653E-4 0.0 3.9495682266188526E-5 1.3165227422062841E-5 18-19 0.0 3.8837420895085383E-4 0.0 7.240875082134562E-5 3.2913068555157104E-5 20-21 0.0 4.081220500839481E-4 0.0 9.873920566547131E-5 5.2660909688251363E-5 22-23 0.0 4.8711341461632517E-4 0.0 1.1190443308753414E-4 5.9243523399282786E-5 24-25 0.0 5.726873928597336E-4 0.0 1.25069660509597E-4 6.582613711031421E-5 26-27 0.0 6.056004614148906E-4 0.0 1.843131839088798E-4 6.582613711031421E-5 28-29 0.0 6.319309162590163E-4 0.0 4.607829597721994E-4 6.582613711031421E-5 30-31 0.0 7.570005767686134E-4 0.0 0.001270444446229064 6.582613711031421E-5 32-33 0.0 7.767484179017077E-4 0.0 0.0028897674191427935 9.873920566547131E-5 34-35 0.0 9.149833058333675E-4 0.0 0.0050883603986272875 1.0532181937650273E-4 36-37 0.0 0.0010598008074760587 0.0 0.008182188842812056 1.0532181937650273E-4 38-39 0.0 0.0010927138760312158 0.0 0.016041829613783573 1.0532181937650273E-4 40-41 0.0 0.0011980356954077185 0.0 0.024375418571949352 1.1848704679856557E-4 42-43 0.0 0.0012243661502518441 0.0 0.030602571142585078 1.1848704679856557E-4 44-45 0.0 0.0013494358107614412 0.0 0.03837663793531318 1.1848704679856557E-4 46-47 0.0 0.0014481750164269125 0.0 0.04638767882163842 1.3165227422062842E-4 48-49 0.0 0.0014481750164269125 0.0 0.054800259144336574 1.4481750164269125E-4 50-51 0.0 0.0016785664963130122 0.0 0.06315359594363545 1.4481750164269125E-4 52-53 0.0 0.0016851491100240436 0.0 0.07922175601226314 1.4481750164269125E-4 54-55 0.0 0.0016851491100240436 0.0 0.09866021430093894 1.4481750164269125E-4 56-57 0.0 0.0016983143374461065 0.0 0.11898732544060395 1.5140011535372266E-4 58-59 0.0 0.001737810019712295 0.0 0.13687228689347633 1.579827290647541E-4 60-61 0.0 0.0017641404745564206 0.0 0.14590363290501143 1.7114795648681693E-4 62-63 0.0 0.0018036361568226093 0.0 0.15636998870555138 1.7114795648681693E-4 64-65 0.0 0.0019747841133094263 0.0 0.16165582751550964 1.7114795648681693E-4 66-67 0.0 0.0019945319544425206 0.0 0.16639530938745226 1.7114795648681693E-4 68-69 0.0 0.002047192864130772 0.0 0.171371765352992 2.0406102504197404E-4 70-71 0.0 0.002093271160107992 0.0 0.17605858631524637 2.303914798860997E-4 72-73 0.0 0.002113019001241086 0.0 0.18003448499670935 2.7646977586331966E-4 74-75 0.0 0.0021788451383514 0.0 0.18300982639409555 2.7646977586331966E-4 76-77 0.0 0.002284166957727903 0.0 0.18597858517777072 2.7646977586331966E-4 78-79 0.0 0.0023434104811271856 0.0 0.1878217170168595 2.896350032853825E-4 80-81 0.0 0.0023434104811271856 0.0 0.18846023054682956 3.2254807184053957E-4 82-83 0.0 0.0023565757085492484 0.0 0.18883543952835835 3.4229591297363387E-4 84-85 0.0 0.0024224018456595626 0.0 0.18893417873402382 3.4229591297363387E-4 86-87 0.0 0.002461897527925751 0.0 0.18896050918886795 3.4229591297363387E-4 88 0.0 0.002580384574724317 0.0 0.18896050918886795 3.4229591297363387E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11640 0.0 49.192772 1 GTATCAA 20540 0.0 36.77991 1 ATCAACG 24720 0.0 29.900818 3 TCAACGC 24860 0.0 29.800909 4 CAACGCA 25250 0.0 29.338106 5 AACGCAG 25670 0.0 28.987268 6 TATCAAC 25895 0.0 28.80927 2 ACGCAGA 29365 0.0 25.281343 7 CGCAGAG 29540 0.0 25.131573 8 GTGGTAT 5650 0.0 21.499899 1 GCAGAGT 34765 0.0 21.305052 9 GAGTACT 20935 0.0 20.80545 12-13 GTACATG 23510 0.0 20.101713 1 TGGTATC 5570 0.0 19.882132 2 CAGAGTA 33550 0.0 19.569645 10-11 TACATGG 23235 0.0 19.50831 2 ACATGGG 23485 0.0 19.026485 3 AGAGTAC 31050 0.0 18.940939 10-11 GTACTTT 23490 0.0 18.524912 14-15 AGTACTT 22530 0.0 17.542135 12-13 >>END_MODULE