##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138632_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7679226 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.82250541916594 33.0 33.0 33.0 33.0 33.0 2 32.82307188250483 33.0 33.0 33.0 33.0 33.0 3 32.81948949021685 33.0 33.0 33.0 33.0 33.0 4 36.77251014620484 37.0 37.0 37.0 37.0 37.0 5 36.78543345384027 37.0 37.0 37.0 37.0 37.0 6 36.79139538281593 37.0 37.0 37.0 37.0 37.0 7 36.77674455732909 37.0 37.0 37.0 37.0 37.0 8 36.775182160285425 37.0 37.0 37.0 37.0 37.0 9 36.775378143578536 37.0 37.0 37.0 37.0 37.0 10-11 36.75415914312198 37.0 37.0 37.0 37.0 37.0 12-13 36.73857671333022 37.0 37.0 37.0 37.0 37.0 14-15 39.070766051161925 40.0 40.0 40.0 37.0 40.0 16-17 39.020869616286845 40.0 40.0 40.0 37.0 40.0 18-19 39.052523978328026 40.0 40.0 40.0 37.0 40.0 20-21 39.067360273249975 40.0 40.0 40.0 37.0 40.0 22-23 39.09945575268392 40.0 40.0 40.0 37.0 40.0 24-25 39.102606608177155 40.0 40.0 40.0 37.0 40.0 26-27 39.016865022723685 40.0 40.0 40.0 37.0 40.0 28-29 38.94653904293446 40.0 40.0 40.0 37.0 40.0 30-31 38.87006828264706 40.0 40.0 40.0 37.0 40.0 32-33 38.84011507883973 40.0 38.5 40.0 37.0 40.0 34-35 38.81988121442427 40.0 37.0 40.0 37.0 40.0 36-37 38.78204878870011 40.0 37.0 40.0 37.0 40.0 38-39 38.72694597262451 40.0 37.0 40.0 37.0 40.0 40-41 38.68839892294871 40.0 37.0 40.0 37.0 40.0 42-43 38.62475625611423 40.0 37.0 40.0 37.0 40.0 44-45 38.53998213031249 40.0 37.0 40.0 37.0 40.0 46-47 38.45908653275447 40.0 37.0 40.0 37.0 40.0 48-49 38.410035413874425 40.0 37.0 40.0 37.0 40.0 50-51 38.34411212284435 40.0 37.0 40.0 37.0 40.0 52-53 38.2730052205677 40.0 37.0 40.0 37.0 40.0 54-55 38.207366439594026 40.0 37.0 40.0 37.0 40.0 56-57 38.09857934710536 40.0 37.0 40.0 37.0 40.0 58-59 37.97830956099653 40.0 37.0 40.0 37.0 40.0 60-61 37.801098455077565 40.0 37.0 40.0 33.0 40.0 62-63 37.61343355903979 38.5 37.0 40.0 33.0 40.0 64-65 37.39442322601455 37.0 37.0 40.0 33.0 40.0 66-67 37.164339004325214 37.0 37.0 40.0 33.0 40.0 68-69 36.92711122020256 37.0 37.0 40.0 33.0 40.0 70-71 36.668088854293856 37.0 37.0 40.0 33.0 40.0 72-73 36.4252025246995 37.0 37.0 37.0 33.0 40.0 74-75 36.18579840058665 37.0 37.0 37.0 33.0 40.0 76-77 34.55848502897325 35.0 33.0 37.0 30.0 37.0 78-79 35.79702619376776 37.0 37.0 37.0 33.0 37.0 80-81 35.911939758295865 37.0 37.0 37.0 33.0 37.0 82-83 35.843070354295634 37.0 37.0 37.0 33.0 37.0 84-85 35.721956566452704 37.0 37.0 37.0 33.0 37.0 86-87 35.61303372848764 37.0 37.0 37.0 33.0 37.0 88-89 35.537212133091955 37.0 37.0 37.0 33.0 37.0 90-91 35.47130860078259 37.0 33.0 37.0 33.0 37.0 92-93 35.399409663741096 37.0 33.0 37.0 33.0 37.0 94-95 35.354091087268124 37.0 33.0 37.0 33.0 37.0 96-97 35.318914703756974 37.0 33.0 37.0 33.0 37.0 98-99 35.27587298848812 37.0 33.0 37.0 33.0 37.0 100 35.214044553337324 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 1.0 20 30.0 21 116.0 22 409.0 23 1360.0 24 3271.0 25 6708.0 26 12352.0 27 20327.0 28 30822.0 29 43453.0 30 60140.0 31 81757.0 32 109893.0 33 151062.0 34 216830.0 35 336870.0 36 684629.0 37 2202981.0 38 3562316.0 39 153898.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.36122572769704 20.19578535649296 14.79787155632612 23.645117359483887 2 14.481654791771984 20.559884550864894 41.92326153703511 23.035199120328013 3 17.928185993986006 25.938982069092326 30.699730319502827 25.433101617418842 4 12.331231974515408 18.169388925897636 38.58054416532686 30.918834934260094 5 13.359404742476674 37.53885671930311 35.3674780574395 13.734260480780716 6 29.849310334140444 37.67266388565723 18.590219899765938 13.887805880436389 7 26.417375917833386 33.007740623859746 22.459099393610764 18.115784064696104 8 24.717764524706006 36.22527843300875 20.901533566013033 18.15542347627222 9 25.443579860782844 16.929831209551587 21.169972077915144 36.456616851750425 10-11 24.15490180911462 26.786234706466512 28.443159505918956 20.615703978499916 12-13 25.091565217640422 24.324365502460797 28.651839391105298 21.93222988879348 14-15 22.29702576796151 25.75262142304446 26.50780169772318 25.442551111270852 16-17 21.638267971277315 29.06682913095669 27.13772195270721 22.157180945058784 18-19 21.660646528699637 27.883116084876264 29.195071222021596 21.261166164402507 20-21 22.472162073328462 26.936133855408944 29.214202668753025 21.37750140250957 22-23 22.145374729311087 27.026930584344242 29.073526324480802 21.754168361863872 24-25 21.983127971604546 27.107018761988915 29.198050134395675 21.711803132010868 26-27 21.957284749373116 27.347696180981085 29.093476423507692 21.601542646138107 28-29 21.67495608615639 27.318249457767013 29.2049547743997 21.8018396816769 30-31 21.95694708065606 27.159377229608257 29.202024836856662 21.681650852879024 32-33 21.648300563519996 27.14887590140845 29.36026636274812 21.84255717232344 34-35 21.740918059331214 27.301800594935006 29.16733658689164 21.789944758842143 36-37 21.827817155866995 27.281548735091356 29.12895313312761 21.76168097591404 38-39 21.81635676490425 27.29504874589626 29.079854012777545 21.808740476421946 40-41 21.99593354429225 27.203145051272543 29.014467318119586 21.786454086315622 42-43 22.000642684030037 27.25775133333578 28.883401567067885 21.858204415566302 44-45 21.992750090607057 27.54414866684911 28.540436299036237 21.92266494350759 46-47 22.268601925310122 27.31577826374795 28.048344385235673 22.367275425706254 48-49 22.2108843537415 27.49076988527162 28.03980268962602 22.258543071360858 50-51 22.09311017756351 27.70619775707438 27.967625533732587 22.23306653162952 52-53 22.178795175342085 27.782671112670382 27.954046095237807 22.084487616749726 54-55 22.13358117913604 27.78160411031903 27.754435752804397 22.330378957740532 56-57 22.421634933372257 27.93249407802662 27.507388655006498 22.138482333594624 58-59 22.072083229154476 28.222313269555883 27.813139644285656 21.89246385700399 60-61 22.399872819379897 28.27938535856732 27.38904943939029 21.931692382662494 62-63 22.215802655376056 28.418723759629472 27.305506857329487 22.059966727664985 64-65 22.1783112537064 28.252642739325566 27.408818216531916 22.16022779043612 66-67 22.33447065018985 28.127957418762694 27.322906636892924 22.21466529415453 68-69 22.305331659265796 27.880220408318635 27.532059364766308 22.282388567649257 70-71 22.294077831056853 27.674696635976748 27.548571738495898 22.482653794470504 72-73 22.403042040286138 27.747918989493257 27.458450912242853 22.39058805797775 74-75 22.28061920763375 27.85006625079704 27.45420972612369 22.415104815445517 76-77 22.395115301313247 27.823851959985735 27.315689697430486 22.465343041270533 78-79 22.309607851585987 27.847572154865645 27.34332754549432 22.49949244805405 80-81 22.320182701893675 27.844280193582755 27.40031540700442 22.43522169751915 82-83 22.401727124926747 27.83412112929614 27.48338096398123 22.28077078179588 84-85 22.520509663848426 27.820642999631705 27.35352836521063 22.30531897130924 86-87 22.2916315974519 27.822188252862272 27.43700829667382 22.449171853012007 88-89 22.41457529944377 27.765855503996917 27.388415948947415 22.4311532476119 90-91 22.404642190175032 27.878778545081634 27.37602669396062 22.34055257078271 92-93 22.436300806705514 27.816648097724094 27.409792054780898 22.337259040789494 94-95 22.296280788742433 27.86068258528942 27.471770378837668 22.371266247130478 96-97 22.336945139682836 28.00773860409865 27.50407701524718 22.151239240971343 98-99 23.49730990869172 29.863317891901065 27.65805933980173 18.981312859605488 100 22.455259546193496 30.800848831051198 21.55861523316539 25.185276389589916 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2503.0 1 2117.0 2 2349.0 3 3176.0 4 4418.0 5 7234.5 6 9517.0 7 11012.5 8 11982.5 9 11701.0 10 10808.0 11 10318.0 12 11868.5 13 16441.5 14 26200.0 15 38773.0 16 48949.5 17 55232.5 18 56283.0 19 52704.5 20 46986.0 21 41058.5 22 37539.5 23 38455.5 24 43931.5 25 52946.5 26 64873.0 27 78950.5 28 92896.5 29 108548.0 30 124716.5 31 139507.0 32 156140.5 33 171839.5 34 186946.5 35 201707.0 36 218428.0 37 235068.0 38 244480.5 39 251456.0 40 261441.5 41 270647.5 42 277220.0 43 284219.5 44 291898.5 45 301052.5 46 311056.0 47 319417.0 48 329456.0 49 328777.5 50 316923.0 51 307407.5 52 294790.5 53 275841.0 54 255904.0 55 236817.5 56 218570.0 57 199069.0 58 176786.0 59 153724.5 60 127532.0 61 101782.0 62 79780.5 63 61198.0 64 45257.5 65 32885.5 66 24258.0 67 18389.0 68 13924.0 69 10098.0 70 7126.0 71 4991.0 72 3461.5 73 2292.0 74 1476.0 75 940.0 76 599.5 77 375.5 78 233.5 79 149.0 80 97.5 81 61.5 82 45.0 83 35.0 84 24.0 85 18.0 86 15.5 87 11.5 88 8.0 89 3.5 90 1.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0018100782552824986 4 0.011212067466174326 5 0.01743665312103069 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.004207116474280093 26-27 0.04299354126269295 28-29 0.08870453835384554 30-31 0.08583310230108122 32-33 0.03605509909140889 34-35 0.003064893420623419 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.326646383872672E-4 56-57 3.096631076522681E-4 58-59 1.4194108550722613E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 1.5003256831976802E-5 72-73 0.011771637495298155 74-75 0.025358420368762086 76-77 0.005378758474814944 78-79 0.0 80-81 0.0 82-83 0.006036376167975498 84-85 0.043305381677886695 86-87 0.040933057640549865 88-89 0.011020880536587369 90-91 1.8941897376917815E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 73.0 20-21 386.0 22-23 953.0 24-25 1674.0 26-27 2871.0 28-29 5626.0 30-31 11802.0 32-33 16036.0 34-35 22371.0 36-37 31953.0 38-39 38780.0 40-41 42483.0 42-43 52920.0 44-45 63493.0 46-47 63255.0 48-49 54990.0 50-51 48047.0 52-53 47529.0 54-55 54763.0 56-57 59212.0 58-59 59392.0 60-61 60169.0 62-63 61653.0 64-65 66204.0 66-67 71481.0 68-69 61533.0 70-71 57033.0 72-73 54715.0 74-75 56269.0 76-77 56454.0 78-79 59918.0 80-81 60455.0 82-83 58747.0 84-85 59049.0 86-87 62233.0 88-89 66260.0 90-91 69378.0 92-93 71552.0 94-95 85668.0 96-97 246447.0 98-99 466200.0 100-101 5149199.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.93330566960752 #Duplication Level Percentage of deduplicated Percentage of total 1 88.13416658390977 73.09257777239499 2 8.175220588142759 13.559961359058242 3 2.072760779843971 5.157027100043223 4 0.7609854266557763 2.5244414799584076 5 0.32981775202439984 1.3676438221951184 6 0.1777974701697017 0.884719916452008 7 0.10140438370458774 0.588686052500752 8 0.06180585043377304 0.41006107889553156 9 0.03829164353928492 0.2858087320411652 >10 0.14410789254361936 1.8290999553996738 >50 0.003047970527512463 0.17200922937812108 >100 5.12453097716074E-4 0.06643144886051588 >500 5.413698308014013E-5 0.030260959582741092 >1k 2.7068424059691458E-5 0.031271093239459716 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.604429144291365E-5 0.0 1.3022145721456825E-5 0.0 3 0.0 2.604429144291365E-5 0.0 1.3022145721456825E-5 0.0 4 0.0 1.041771657716546E-4 0.0 1.3022145721456825E-5 0.0 5 0.0 1.041771657716546E-4 0.0 1.3022145721456825E-5 0.0 6 1.1719931149311142E-4 1.041771657716546E-4 0.0 1.3022145721456825E-5 0.0 7 1.1719931149311142E-4 1.041771657716546E-4 0.0 1.3022145721456825E-5 1.3022145721456825E-5 8 1.1719931149311142E-4 1.1719931149311142E-4 0.0 1.3022145721456825E-5 2.604429144291365E-5 9 1.1719931149311142E-4 1.692878943789387E-4 0.0 2.604429144291365E-5 3.9066437164370474E-5 10-11 1.1719931149311142E-4 1.692878943789387E-4 0.0 3.2555364303642065E-5 3.9066437164370474E-5 12-13 1.1719931149311142E-4 1.8231004010039553E-4 0.0 5.20885828858273E-5 3.9066437164370474E-5 14-15 1.1719931149311142E-4 2.4090969584695122E-4 0.0 5.20885828858273E-5 3.9066437164370474E-5 16-17 1.562657486574819E-4 2.6044291442913647E-4 0.0 5.20885828858273E-5 3.9066437164370474E-5 18-19 1.562657486574819E-4 2.799761330113217E-4 0.0 7.813287432874093E-5 4.557751002509888E-5 20-21 1.562657486574819E-4 2.9950935159350696E-4 0.0 9.115502005019777E-5 9.115502005019777E-5 22-23 1.562657486574819E-4 3.2555364303642057E-4 0.0 1.1719931149311142E-4 9.115502005019777E-5 24-25 1.562657486574819E-4 3.711311530615195E-4 0.0 1.4324360293602507E-4 9.115502005019777E-5 26-27 1.562657486574819E-4 4.0368651736516156E-4 0.0 1.6277682151821029E-4 9.115502005019777E-5 28-29 1.562657486574819E-4 4.0368651736516156E-4 0.0 3.060204244542354E-4 1.041771657716546E-4 30-31 1.562657486574819E-4 4.2973080880807517E-4 0.0 7.162180146801253E-4 1.1719931149311142E-4 32-33 1.562657486574819E-4 4.2973080880807517E-4 0.0 0.0015301021222711769 1.1719931149311142E-4 34-35 1.692878943789387E-4 4.6228617311171725E-4 0.0 0.00250025197851971 1.1719931149311142E-4 36-37 1.692878943789387E-4 5.013526102760877E-4 0.0 0.004238708432334196 1.1719931149311142E-4 38-39 1.8882111296112395E-4 5.208858288582729E-4 0.0 0.007044980835308141 1.6277682151821029E-4 40-41 1.9533218582185236E-4 5.990187031870139E-4 0.0 0.00996194147691447 1.692878943789387E-4 42-43 1.9533218582185236E-4 6.185519217691991E-4 0.0 0.013054701085760467 1.692878943789387E-4 44-45 2.0184325868258078E-4 7.031958689586685E-4 0.0 0.01649254755622507 1.692878943789387E-4 46-47 2.083543315433092E-4 7.683065975659526E-4 0.0 0.02037965805407993 1.692878943789387E-4 48-49 2.083543315433092E-4 7.683065975659526E-4 0.0 0.0245662779035283 1.692878943789387E-4 50-51 2.3439862298622283E-4 8.399283990339651E-4 0.0 0.02856407664001554 1.8231004010039553E-4 52-53 2.3439862298622283E-4 8.529505447554219E-4 0.0 0.032275388170630734 1.8231004010039553E-4 54-55 2.3439862298622283E-4 8.659726904768788E-4 0.0 0.03623412046995361 1.8231004010039553E-4 56-57 2.3439862298622283E-4 8.724837633376072E-4 0.0 0.04043376246512344 1.8882111296112395E-4 58-59 2.3439862298622283E-4 8.789948361983355E-4 0.0 0.04486129201041876 1.9533218582185236E-4 60-61 2.799761330113217E-4 8.85505909059064E-4 0.0 0.04915860009849951 1.9533218582185236E-4 62-63 3.385757887578774E-4 9.050391276412492E-4 0.0 0.05329313136506205 1.9533218582185236E-4 64-65 3.385757887578774E-4 0.0011003713134631016 0.0 0.057440684777346054 1.9533218582185236E-4 66-67 3.5159793447933423E-4 0.0011068823863238301 0.0 0.06224585654856362 2.0184325868258078E-4 68-69 3.5159793447933423E-4 0.0011524598963489289 0.0 0.06692080686256661 2.2137647726476603E-4 70-71 3.5159793447933423E-4 0.0011980374063740276 0.0 0.07143298035505141 2.4090969584695122E-4 72-73 3.776422259222479E-4 0.0012110595520954846 0.0 0.0747080500039978 2.4742076870767964E-4 74-75 3.776422259222479E-4 0.0012436149163991268 0.0 0.0775013002612503 2.4742076870767964E-4 76-77 3.776422259222479E-4 0.0013087256450064109 0.0 0.08077636991019668 2.4742076870767964E-4 78-79 3.776422259222479E-4 0.0013412810093100529 0.0 0.08258644816547918 2.5393184156840805E-4 80-81 3.776422259222479E-4 0.0013412810093100529 0.0 0.08320500008724838 2.734650601505933E-4 82-83 3.776422259222479E-4 0.0013412810093100529 0.0 0.08362170875033499 2.8648720587205013E-4 84-85 3.776422259222479E-4 0.0013412810093100529 0.0 0.08380401879043539 2.8648720587205013E-4 86-87 3.9066437164370473E-4 0.0013412810093100529 0.0 0.08388215166476412 2.8648720587205013E-4 88 3.9066437164370473E-4 0.0013673253007529665 0.0 0.08388866273762485 2.8648720587205013E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12470 0.0 49.74644 1 CTTATAC 6390 0.0 38.10723 1 GTATCAA 22375 0.0 37.1322 1 ATCAACG 26950 0.0 30.303734 3 TCAACGC 27280 0.0 29.968195 4 CAACGCA 27510 0.0 29.651447 5 TATCAAC 27745 0.0 29.636288 2 AACGCAG 28120 0.0 29.078194 6 TATACAC 9445 0.0 28.913282 3 TTATACA 9655 0.0 26.153088 2 CGCAGAG 32200 0.0 25.380444 8 ACGCAGA 32360 0.0 25.215223 7 GCAGAGT 36665 0.0 22.254591 9 GTGGTAT 5630 0.0 22.006418 1 GAGTACT 22650 0.0 21.115452 12-13 GTACATG 24185 0.0 20.899103 1 TACACAT 12865 0.0 20.757544 5 ACATCTC 12090 0.0 20.700981 8 TACATGG 23885 0.0 20.659035 2 TGGTATC 5605 0.0 20.192413 2 >>END_MODULE