##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138630_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5827892 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.89665886052796 33.0 33.0 33.0 33.0 33.0 2 32.95491320017598 33.0 33.0 33.0 33.0 33.0 3 33.62942141000554 33.0 33.0 33.0 33.0 37.0 4 36.78841714980305 37.0 37.0 37.0 37.0 37.0 5 36.80520949942106 37.0 37.0 37.0 37.0 37.0 6 36.80691457563044 37.0 37.0 37.0 37.0 37.0 7 36.79854602659075 37.0 37.0 37.0 37.0 37.0 8 36.78643238412791 37.0 37.0 37.0 37.0 37.0 9 36.79309293995153 37.0 37.0 37.0 37.0 37.0 10-11 36.788813862713994 37.0 37.0 37.0 37.0 37.0 12-13 37.043533493757266 37.0 37.0 37.0 37.0 38.5 14-15 39.108203703843515 40.0 40.0 40.0 37.0 40.0 16-17 39.06229962737813 40.0 40.0 40.0 37.0 40.0 18-19 39.105699196210224 40.0 40.0 40.0 37.0 40.0 20-21 39.12754464871925 40.0 40.0 40.0 37.0 40.0 22-23 39.15519993453478 40.0 40.0 40.0 37.0 40.0 24-25 39.143492512054195 40.0 40.0 40.0 37.0 40.0 26-27 39.06207929789768 40.0 40.0 40.0 37.0 40.0 28-29 38.99754263182051 40.0 40.0 40.0 37.0 40.0 30-31 38.91754803350408 40.0 40.0 40.0 37.0 40.0 32-33 38.88486911719057 40.0 40.0 40.0 37.0 40.0 34-35 38.864064596278084 40.0 40.0 40.0 37.0 40.0 36-37 38.828324234522356 40.0 37.0 40.0 37.0 40.0 38-39 38.78165385255902 40.0 37.0 40.0 37.0 40.0 40-41 38.73945277933429 40.0 37.0 40.0 37.0 40.0 42-43 38.66729458393179 40.0 37.0 40.0 37.0 40.0 44-45 38.57998585198059 40.0 37.0 40.0 37.0 40.0 46-47 38.49836773919149 40.0 37.0 40.0 37.0 40.0 48-49 38.44957468548159 40.0 37.0 40.0 37.0 40.0 50-51 38.388903996227704 40.0 37.0 40.0 37.0 40.0 52-53 38.31570022916945 40.0 37.0 40.0 37.0 40.0 54-55 38.24307194031633 40.0 37.0 40.0 37.0 40.0 56-57 38.129607389960064 40.0 37.0 40.0 37.0 40.0 58-59 37.998227985333216 40.0 37.0 40.0 37.0 40.0 60-61 37.828772937089234 40.0 37.0 40.0 35.0 40.0 62-63 37.63447848145874 37.0 37.0 40.0 33.0 40.0 64-65 37.40332547868347 37.0 37.0 40.0 33.0 40.0 66-67 37.17397723734932 37.0 37.0 40.0 33.0 40.0 68-69 36.93005186077819 37.0 37.0 40.0 33.0 40.0 70-71 36.68017992823907 37.0 37.0 40.0 33.0 40.0 72-73 36.43274882061465 37.0 37.0 37.0 33.0 40.0 74-75 36.00525417815463 37.0 37.0 37.0 33.0 40.0 76-77 34.81003220339689 37.0 33.0 37.0 30.0 37.0 78-79 35.855200298086515 37.0 37.0 37.0 33.0 37.0 80-81 35.944573986177474 37.0 37.0 37.0 33.0 37.0 82-83 35.87396931702037 37.0 37.0 37.0 33.0 37.0 84-85 35.759778353271585 37.0 37.0 37.0 33.0 37.0 86-87 35.661586999450975 37.0 37.0 37.0 33.0 37.0 88-89 35.59420759903344 37.0 37.0 37.0 33.0 37.0 90-91 35.52981144986917 37.0 35.0 37.0 33.0 37.0 92-93 35.45980170049798 37.0 33.0 37.0 33.0 37.0 94-95 35.428743735416155 37.0 33.0 37.0 33.0 37.0 96-97 35.38889973095707 37.0 33.0 37.0 33.0 37.0 98-99 35.33742121263974 37.0 33.0 37.0 33.0 37.0 100 35.26043542479892 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 2.0 16 0.0 17 0.0 18 0.0 19 6.0 20 8.0 21 68.0 22 247.0 23 774.0 24 2003.0 25 4102.0 26 7923.0 27 13383.0 28 20175.0 29 29402.0 30 40936.0 31 56822.0 32 77305.0 33 107864.0 34 156066.0 35 244509.0 36 506707.0 37 1675710.0 38 2740161.0 39 143719.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.24160458869648 0.0 24.721090975355388 29.03730443594813 2 15.325870883662828 23.347120590887368 38.44433062306908 22.882677902380728 3 16.81350100280456 24.85927446644071 32.62939679349639 25.697827737258343 4 13.169928892038946 22.769718150935592 37.428186279346946 26.63216667767852 5 17.478616043626136 36.58313868411465 31.766598039624522 14.17164723263469 6 28.064126788897255 37.15484089272759 20.07195740758408 14.709074910791072 7 26.38439422007134 33.202451246522756 21.915076669231347 18.498077864174558 8 24.470563284288726 31.739246369013014 22.062728684745704 21.727461661952553 9 24.36510491271973 20.601840253731538 23.18205279027134 31.851002043277397 10-11 25.111695618244127 25.9093253615544 27.955777148924515 21.023201871276957 12-13 25.429314750513566 24.180055155449004 28.090422746337783 22.30020734769965 14-15 22.78105874302406 26.4313322896169 26.613353507580445 24.174255459778596 16-17 21.428494213688243 28.609521247133614 27.61732715705782 22.344657382120328 18-19 21.367082643261064 27.627708269130586 29.741397060892687 21.263812026715666 20-21 22.503079879359845 26.868482309064856 29.654800412063366 20.973637399511937 22-23 22.33644709858165 26.50186068273684 29.486804043693333 21.674888174988176 24-25 21.876035774392353 26.894225925191662 29.717986149910185 21.511752150505796 26-27 21.90357463648998 27.12892461184676 29.360426245667686 21.60707450599557 28-29 21.68344461900346 27.079845448221818 29.558569134138 21.67814079863672 30-31 22.087698308991527 26.923692198233567 29.49183349156948 21.496776001205422 32-33 21.87848405115666 27.32070013906475 29.210491710834248 21.59032409894434 34-35 21.928442569247004 27.189422343114778 29.297646035991644 21.58448905164658 36-37 22.05461299996046 27.18514084111352 29.133971263654203 21.626274895271816 38-39 21.703000380456974 27.506960880916964 29.206012876267806 21.58402586235825 40-41 22.186695272948683 27.092193880163666 28.950058959244817 21.77105188764283 42-43 22.088711587456437 27.150512314374257 28.860789842747725 21.899986255421585 44-45 22.10977606089598 27.737338454298854 28.335568969869435 21.81731651493573 46-47 22.28254006629057 27.430429262539928 27.89774789797455 22.389282773194953 48-49 22.23045894731566 27.668991765827442 27.928158040760348 22.17239124609655 50-51 22.249868825603777 27.903531071946546 27.592493053157764 22.254107049291918 52-53 22.45380347920162 27.685449224233317 27.46418093345733 22.396566363107727 54-55 22.415827482315066 27.656004425911718 27.517188531895847 22.41097955987737 56-57 22.544006518673097 27.96156783222765 27.26812582439248 22.22629982470677 58-59 22.46065979718376 27.796233477378994 27.51174313993626 22.231363585500986 60-61 22.46160623795915 27.78404231683452 27.465663604904904 22.288687840301428 62-63 22.41244208884325 27.918267907115148 27.309074364789097 22.36021563925251 64-65 22.40537340243492 27.715564681653408 27.327957856394807 22.551104059516863 66-67 22.516575400219818 27.83104618886427 27.192634346890483 22.459744064025422 68-69 22.461693871294873 27.764727155530146 27.35967799122689 22.4139009819481 70-71 22.526697491920018 27.34941255933921 27.429509752540888 22.694380196199887 72-73 22.565554203149713 27.52753257485887 27.38931585127688 22.517597370714533 74-75 22.35015334332149 27.7240597249776 27.34564895913516 22.58013797256575 76-77 22.618595600699276 27.542578414657815 27.13792050450177 22.700905480141135 78-79 22.439649424194826 27.65619439522416 27.24868548505818 22.655470695522833 80-81 22.429014649442287 27.69264565540427 27.28991671477179 22.58842298038165 82-83 22.74140469235589 27.379966397316835 27.43355007832311 22.44507883200416 84-85 22.83300838484113 27.389828633546387 27.344537940262658 22.43262504134983 86-87 22.42890749972429 27.618828239693823 27.311421256667796 22.640843003914092 88-89 22.66214454179252 27.292895758921244 27.35806939117155 22.686890308114677 90-91 22.785148240582995 27.27977006532315 27.39417194011014 22.540909753983712 92-93 22.62359310038347 27.400119582777094 27.441707295362665 22.53458002147677 94-95 22.651125205492878 27.27040412451508 27.415533646854655 22.662937023137385 96-97 22.584917704784722 27.677435118126574 27.56570304243407 22.171944134654638 98-99 23.704283461673885 29.65147757484831 27.028329327475088 19.615909636002716 100 22.87131534506821 29.932987768435694 21.46700604331449 25.728690843181607 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1137.0 1 1093.5 2 1776.5 3 2663.0 4 4074.5 5 7315.0 6 9670.5 7 10829.5 8 11418.0 9 10854.5 10 9633.5 11 8704.5 12 9980.5 13 13873.5 14 22656.5 15 35462.5 16 46552.0 17 53059.5 18 53571.0 19 48935.0 20 42095.5 21 34710.0 22 29433.0 23 28345.5 24 31050.0 25 37220.0 26 46413.5 27 56397.5 28 65299.0 29 76270.0 30 87798.5 31 98327.0 32 111593.0 33 124988.5 34 138930.5 35 153764.5 36 169606.5 37 186640.0 38 194198.5 39 196403.5 40 202537.0 41 205737.5 42 207058.5 43 212298.0 44 219205.5 45 226812.5 46 232577.0 47 238000.5 48 240153.5 49 236675.0 50 232845.0 51 228301.5 52 221428.0 53 212954.5 54 203857.5 55 190284.0 56 173748.5 57 156519.0 58 139216.5 59 121904.5 60 102069.5 61 82076.5 62 64407.0 63 48768.5 64 35863.5 65 26154.5 66 19124.5 67 14300.0 68 10763.0 69 7854.0 70 5694.0 71 4085.0 72 2886.5 73 1937.0 74 1297.5 75 892.5 76 570.0 77 334.0 78 212.0 79 152.0 80 107.5 81 75.5 82 54.5 83 37.0 84 22.5 85 14.0 86 12.5 87 11.5 88 7.0 89 3.5 90 2.5 91 2.0 92 2.0 93 2.0 94 1.0 95 0.0 96 0.5 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.0295317758119059E-4 2 8.064665577193263E-4 3 0.0040494916515268296 4 0.014361968272576088 5 0.012749035157137436 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 2.5738939205655153E-5 22-23 2.7456910883018543E-4 24-25 0.008015210707360367 26-27 0.045813069970129225 28-29 0.08615362416801975 30-31 0.07566887198434824 32-33 0.02872157133011716 34-35 0.002453110392818122 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 9.28719910984054E-5 56-57 1.497510529136922E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 1.9496166420056407E-5 68-69 5.9027823551668724E-5 70-71 0.0013506597824067229 72-73 0.015284906140152266 74-75 0.023710182268991613 76-77 0.003409893612340221 78-79 3.092732809843632E-5 80-81 4.374752097381148E-4 82-83 0.010187334343998286 84-85 0.041465585159148104 86-87 0.03458865025931817 88-89 0.008888993209591594 90-91 5.500616013987406E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 85.0 20-21 339.0 22-23 778.0 24-25 1412.0 26-27 2591.0 28-29 5518.0 30-31 10039.0 32-33 14017.0 34-35 20277.0 36-37 27930.0 38-39 33772.0 40-41 36464.0 42-43 45773.0 44-45 55498.0 46-47 54744.0 48-49 46234.0 50-51 39773.0 52-53 38769.0 54-55 41088.0 56-57 42746.0 58-59 42196.0 60-61 41786.0 62-63 41529.0 64-65 43717.0 66-67 46687.0 68-69 47673.0 70-71 46814.0 72-73 45400.0 74-75 45278.0 76-77 46584.0 78-79 49475.0 80-81 49824.0 82-83 48305.0 84-85 49012.0 86-87 51003.0 88-89 55367.0 90-91 56971.0 92-93 58750.0 94-95 74837.0 96-97 267883.0 98-99 1030619.0 100-101 3070335.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.48338643001881 #Duplication Level Percentage of deduplicated Percentage of total 1 86.81251610611653 70.73777796836926 2 8.918885385840277 14.534819688389414 3 2.3847288280425687 5.829473418785955 4 0.9123935821556548 2.9737967532423335 5 0.40786416226598854 1.6617076572437721 6 0.21945439872090083 1.0729132544845552 7 0.1202639567141349 0.6859660120978638 8 0.06738246154475527 0.43924409221257404 9 0.0459542425729434 0.33700565751029726 >10 0.10740791016238506 1.2567144456025754 >50 0.002023487577625085 0.10849167624205358 >100 8.734183036321644E-4 0.1808500109005962 >500 1.800428453917018E-4 0.10154920592079046 >1k 7.201713720874375E-5 0.07969015899797131 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.7158862930198432E-5 0.0 2 0.0 0.0 0.0 1.7158862930198432E-5 0.0 3 0.0 0.0 0.0 1.0295317758119059E-4 0.0 4 0.0 0.0 0.0 1.0295317758119059E-4 0.0 5 0.0 0.0 0.0 1.3727090344158746E-4 0.0 6 0.0 0.0 0.0 1.3727090344158746E-4 0.0 7 0.0 0.0 0.0 1.3727090344158746E-4 0.0 8 0.0 1.7158862930198432E-5 0.0 1.3727090344158746E-4 0.0 9 0.0 3.4317725860396864E-5 0.0 1.544297663717859E-4 0.0 10-11 0.0 3.4317725860396864E-5 0.0 2.5738294395297645E-4 0.0 12-13 0.0 3.4317725860396864E-5 0.0 3.260183956737702E-4 0.0 14-15 0.0 3.4317725860396864E-5 0.0 3.431772586039686E-4 0.0 16-17 0.0 3.4317725860396864E-5 0.0 3.6033612153416706E-4 0.0 18-19 0.0 3.4317725860396864E-5 0.0 4.0323327885966314E-4 0.0 20-21 0.0 3.4317725860396864E-5 0.0 4.890275935106553E-4 0.0 22-23 0.0 3.4317725860396864E-5 0.0 5.319247508361514E-4 0.0 24-25 0.0 3.4317725860396864E-5 0.0 5.662424766965482E-4 0.0 26-27 0.0 3.4317725860396864E-5 0.0 6.691956542777388E-4 0.0 28-29 0.0 3.4317725860396864E-5 0.0 9.52316892626013E-4 0.0 30-31 0.0 6.863545172079373E-5 0.0 0.0016043536839735533 8.579431465099216E-6 32-33 0.0 6.863545172079373E-5 0.0 0.0028397918149478405 1.7158862930198432E-5 34-35 0.0 8.579431465099215E-5 0.0 0.004804481620455561 1.7158862930198432E-5 36-37 0.0 1.0295317758119059E-4 0.0 0.00799603012547247 1.7158862930198432E-5 38-39 0.0 1.0295317758119059E-4 0.0 0.012543128801975053 1.7158862930198432E-5 40-41 0.0 1.3727090344158746E-4 0.0 0.017330451559500415 1.7158862930198432E-5 42-43 0.0 1.458503349066867E-4 0.0 0.02181749421574731 1.7158862930198432E-5 44-45 0.0 1.544297663717859E-4 0.0 0.0273512275107363 1.7158862930198432E-5 46-47 0.0 1.544297663717859E-4 0.0 0.03407750177937409 1.7158862930198432E-5 48-49 0.0 1.544297663717859E-4 0.0 0.040735140596291075 1.7158862930198432E-5 50-51 0.0 1.544297663717859E-4 0.0 0.04733272339295237 1.7158862930198432E-5 52-53 0.0 1.544297663717859E-4 0.0 0.053595708362474806 1.7158862930198432E-5 54-55 0.0 1.544297663717859E-4 0.0 0.0590350679113477 1.7158862930198432E-5 56-57 0.0 1.7158862930198433E-4 0.0 0.06353926943052479 1.7158862930198432E-5 58-59 0.0 1.7158862930198433E-4 0.0 0.06830943332511996 1.7158862930198432E-5 60-61 0.0 1.7158862930198433E-4 0.0 0.07310533551411041 1.7158862930198432E-5 62-63 0.0 2.0590635516238117E-4 0.0 0.07783260225138008 1.7158862930198432E-5 64-65 0.0 3.088595327435718E-4 0.0 0.08295452283604432 1.7158862930198432E-5 66-67 0.0 3.088595327435718E-4 0.0 0.08770752786770929 1.7158862930198432E-5 68-69 0.0 3.088595327435718E-4 0.0 0.09291524276702451 1.7158862930198432E-5 70-71 0.0 3.088595327435718E-4 0.0 0.09750523860085258 1.7158862930198432E-5 72-73 0.0 3.17438964208671E-4 0.0 0.10121155299377545 1.7158862930198432E-5 74-75 0.0 3.5175669006906786E-4 0.0 0.1038282795906307 1.7158862930198432E-5 76-77 0.0 3.774949844643655E-4 0.0 0.10703698695857783 1.7158862930198432E-5 78-79 0.0 3.774949844643655E-4 0.0 0.10870997609427216 1.7158862930198432E-5 80-81 0.0 3.774949844643655E-4 0.0 0.10937917174854991 1.7158862930198432E-5 82-83 0.0 3.774949844643655E-4 0.0 0.10967087241836328 1.7158862930198432E-5 84-85 0.0 3.9465384739456393E-4 0.0 0.10979956389033976 1.7158862930198432E-5 86-87 0.0 3.9465384739456393E-4 0.0 0.10988535820499076 1.7158862930198432E-5 88 0.0 3.9465384739456393E-4 0.0 0.10988535820499076 1.7158862930198432E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11570 0.0 49.439114 1 GTATCAA 20745 0.0 37.223087 1 ATCAACG 24155 0.0 31.43926 3 ACGCAGA 25380 0.0 29.86223 7 AACGCAG 25460 0.0 29.80185 6 CAACGCA 25615 0.0 29.592075 5 TATCAAC 25975 0.0 29.580738 2 TCAACGC 25725 0.0 29.51824 4 CGCAGAG 29395 0.0 25.739956 8 GTGGTAT 5490 0.0 23.58464 1 GCAGAGT 32905 0.0 22.89074 9 TGGTATC 5660 0.0 21.521753 2 GAGTACT 19925 0.0 20.867373 12-13 CAGAGTA 32315 0.0 20.245209 10-11 GTACTAG 1915 0.0 20.01713 1 ACATGGG 22080 0.0 19.829971 3 GTACATG 23230 0.0 19.7467 1 TACATGG 22650 0.0 19.66942 2 CTCGATA 1125 0.0 19.482262 94 GTACTTT 21895 0.0 18.932306 14-15 >>END_MODULE