##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138629_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6971590 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.812869374131296 33.0 33.0 33.0 33.0 33.0 2 32.81791183933651 33.0 33.0 33.0 33.0 33.0 3 32.8153244812159 33.0 33.0 33.0 33.0 33.0 4 36.7641490678597 37.0 37.0 37.0 37.0 37.0 5 36.77633294556909 37.0 37.0 37.0 37.0 37.0 6 36.78256122347987 37.0 37.0 37.0 37.0 37.0 7 36.768032543508724 37.0 37.0 37.0 37.0 37.0 8 36.76606484317064 37.0 37.0 37.0 37.0 37.0 9 36.76874199429398 37.0 37.0 37.0 37.0 37.0 10-11 36.7452205307541 37.0 37.0 37.0 37.0 37.0 12-13 36.727921464113635 37.0 37.0 37.0 37.0 37.0 14-15 39.04450541411643 40.0 40.0 40.0 37.0 40.0 16-17 38.98918941016325 40.0 40.0 40.0 37.0 40.0 18-19 39.02259326781982 40.0 40.0 40.0 37.0 40.0 20-21 39.038643783800325 40.0 40.0 40.0 37.0 40.0 22-23 39.070319032518086 40.0 40.0 40.0 37.0 40.0 24-25 39.0773219769774 40.0 40.0 40.0 37.0 40.0 26-27 38.98550379488363 40.0 40.0 40.0 37.0 40.0 28-29 38.90008161272313 40.0 40.0 40.0 37.0 40.0 30-31 38.834080963606276 40.0 38.5 40.0 37.0 40.0 32-33 38.79907473302619 40.0 37.0 40.0 37.0 40.0 34-35 38.77797620639568 40.0 37.0 40.0 37.0 40.0 36-37 38.74450630991467 40.0 37.0 40.0 37.0 40.0 38-39 38.67166095538023 40.0 37.0 40.0 37.0 40.0 40-41 38.658267520106165 40.0 37.0 40.0 37.0 40.0 42-43 38.612723293227305 40.0 37.0 40.0 37.0 40.0 44-45 38.53460661474745 40.0 37.0 40.0 37.0 40.0 46-47 38.45978549345274 40.0 37.0 40.0 37.0 40.0 48-49 38.40938375384369 40.0 37.0 40.0 37.0 40.0 50-51 38.31622618875406 40.0 37.0 40.0 37.0 40.0 52-53 38.248301405917545 40.0 37.0 40.0 37.0 40.0 54-55 38.18261002019999 40.0 37.0 40.0 37.0 40.0 56-57 38.07110041144378 40.0 37.0 40.0 37.0 40.0 58-59 37.958556416105964 40.0 37.0 40.0 35.0 40.0 60-61 37.771114058960336 40.0 37.0 40.0 33.0 40.0 62-63 37.58778500083324 38.5 37.0 40.0 33.0 40.0 64-65 37.380430235250415 37.0 37.0 40.0 33.0 40.0 66-67 37.15888326589325 37.0 37.0 40.0 33.0 40.0 68-69 36.93040878095027 37.0 37.0 40.0 33.0 40.0 70-71 36.67715691496848 37.0 37.0 40.0 33.0 40.0 72-73 36.43572953128141 37.0 37.0 37.0 33.0 40.0 74-75 36.19795643918218 37.0 37.0 37.0 33.0 40.0 76-77 34.576023456661176 35.0 33.0 37.0 30.0 37.0 78-79 35.8081310280101 37.0 37.0 37.0 33.0 37.0 80-81 35.918421399100524 37.0 37.0 37.0 33.0 37.0 82-83 35.84924915142429 37.0 37.0 37.0 33.0 37.0 84-85 35.72876284974527 37.0 37.0 37.0 33.0 37.0 86-87 35.61964742805311 37.0 37.0 37.0 33.0 37.0 88-89 35.54439413471794 37.0 37.0 37.0 33.0 37.0 90-91 35.47916798773553 37.0 33.0 37.0 33.0 37.0 92-93 35.40825484147952 37.0 33.0 37.0 33.0 37.0 94-95 35.36383118428644 37.0 33.0 37.0 33.0 37.0 96-97 35.33265353529757 37.0 33.0 37.0 33.0 37.0 98-99 35.28880541132784 37.0 33.0 37.0 33.0 37.0 100 35.22904850112081 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 23.0 21 106.0 22 425.0 23 1261.0 24 3131.0 25 6441.0 26 11563.0 27 18900.0 28 28184.0 29 40120.0 30 54007.0 31 73353.0 32 99076.0 33 135264.0 34 197135.0 35 306852.0 36 618594.0 37 1989280.0 38 3239037.0 39 148836.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.513025005773436 20.545413600053934 14.784001927824212 24.15755946634842 2 14.233195010033578 20.59855786126264 42.18740631620621 22.98084081249758 3 17.582407809443566 26.207448457331083 31.229798878484083 24.98034485474127 4 12.195212922383927 18.599783383661965 38.08843971682076 31.11656397713335 5 13.194314229504473 37.49075543666404 35.54391316430123 13.771017169530264 6 29.441892021762612 37.779114950821835 18.68853446631256 14.090458561102992 7 25.944339813442845 33.04279224681888 22.43172647846474 18.58114146127354 8 24.473111585735822 36.21449339390297 21.35683538475441 17.9555596356068 9 25.057081670035096 16.881141891591444 20.982903469653262 37.07887296872019 10-11 23.864269126555058 26.674653845105635 28.64493609061921 20.81614093772009 12-13 24.936542453012873 24.209993703014664 28.595248716576847 22.258215127395616 14-15 22.222670868481938 25.740024872374885 26.166627698989757 25.87067656015342 16-17 21.75627797962875 29.171049932655247 26.83306103772597 22.23961104999003 18-19 21.71512524402611 27.695382258566553 28.708687688174432 21.880804809232902 20-21 22.456846665366605 26.755651999724307 28.90237946963246 21.885121865276634 22-23 21.965345946283644 27.391457998326047 28.595063456736515 22.048132598653794 24-25 22.015166239356034 27.55743225647419 28.8491136957159 21.57828780845388 26-27 22.077941283625194 27.696201931895146 28.74298314159275 21.48287364288691 28-29 21.336842857181868 27.191637853013066 29.171655787257716 22.299863502547343 30-31 22.068670078263118 26.887986028540347 29.40912668374504 21.634217209451503 32-33 21.701405940745428 27.65951631692302 28.943238969831576 21.69583877249998 34-35 21.555264782211385 27.72524479658738 29.491870084836002 21.227620336365234 36-37 22.167144065334853 27.25676887307872 28.69358709192879 21.882499969657633 38-39 21.812917904224033 27.082110407186853 29.02065928277759 22.08431240581152 40-41 21.857500644236787 26.964424791425344 29.182780569450053 21.995293994887817 42-43 22.08840739978804 26.911459660104082 29.17935848599784 21.82077445411004 44-45 21.782976392940938 27.413681875789763 28.75169386280939 22.05164786845991 46-47 22.4361611922791 26.93694205689059 27.97178278854671 22.655113962283597 48-49 22.162021443870543 27.06633815682895 28.238529801107543 22.533110598192962 50-51 21.961370600827276 27.476252646447037 28.241486341660988 22.320890411064706 52-53 21.973776629460566 27.78137794950623 28.370998864661058 21.873846556372147 54-55 21.95715201415788 27.78486106532697 27.881610578575128 22.37637634194002 56-57 22.412856460927255 28.151167159526995 27.3249657707947 22.11101060875105 58-59 21.80208814597211 28.588301462769046 28.04456215300297 21.565048238255876 60-61 22.377570372378788 28.855849129721463 27.106311061608636 21.66026943629111 62-63 21.981365667928966 29.121176610870574 27.04493702895065 21.85252069224981 64-65 22.007990430406814 28.805361690743624 27.2062178368435 21.980430042006063 66-67 22.199839938616957 28.426450679787973 27.24121615236722 22.132493229227848 68-69 22.259739483629946 27.98098486150249 27.52935648650076 22.229919168366802 70-71 22.270911584609323 27.72662255927831 27.560709377486404 22.44175647862596 72-73 22.381471254960104 27.736640263727224 27.485413670649596 22.396474810663076 74-75 22.255833558394816 27.935324733751678 27.449932340524253 22.358909367329254 76-77 22.3679388639421 27.865699345595978 27.378578755298154 22.387783035163764 78-79 22.28298132541263 27.86708520920243 27.355576785974034 22.494356679410902 80-81 22.31006738308613 27.870826868722226 27.41588449028336 22.40322125790829 82-83 22.373186082891568 27.835792188570448 27.54448470283083 22.24653702570716 84-85 22.512944075248136 27.822413477103865 27.381394819113236 22.28324762853476 86-87 22.270696898043347 27.818730234706624 27.497130846394008 22.41344202085602 88-89 22.376937024583704 27.789417371557107 27.429327470880665 22.404318132978524 90-91 22.387895115672986 27.87979018246327 27.419318958955046 22.31299574290869 92-93 22.44482148246007 27.84043641270181 27.459902573754576 22.254839531083547 94-95 22.272855590919683 27.91232187758665 27.488920751164557 22.325901780329108 96-97 22.38768388802579 28.002085647345194 27.511408933038258 22.09882153159077 98-99 23.49807234885119 29.897202346147772 27.675340675156463 18.929384629844577 100 22.353333932538103 30.935252770927846 21.557202542700658 25.15421075383339 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1759.0 1 1566.5 2 2068.0 3 2937.0 4 4118.0 5 6809.5 6 8932.5 7 10181.0 8 10776.0 9 10432.0 10 9631.0 11 8950.0 12 10135.0 13 13870.0 14 22080.0 15 32704.0 16 41128.0 17 46327.0 18 47247.5 19 44366.5 20 40031.5 21 35801.5 22 33585.0 23 35092.5 24 40709.5 25 49564.0 26 61294.5 27 74963.0 28 88413.0 29 103066.0 30 117062.5 31 130566.5 32 146704.5 33 162140.0 34 176899.5 35 191626.0 36 206700.5 37 220797.0 38 229090.5 39 235151.0 40 244943.0 41 253818.5 42 259393.5 43 265674.0 44 274513.0 45 291388.0 46 315563.0 47 332989.0 48 327555.0 49 316292.5 50 307124.0 51 287554.5 52 266648.0 53 247604.5 54 231889.0 55 216520.5 56 199390.5 57 180269.0 58 160470.5 59 141483.5 60 118668.5 61 95227.0 62 75047.5 63 57938.5 64 43042.5 65 31365.5 66 22998.5 67 17228.0 68 12834.0 69 9175.5 70 6807.5 71 5037.5 72 3442.5 73 2249.0 74 1481.5 75 938.0 76 602.5 77 387.5 78 258.5 79 186.5 80 130.0 81 90.5 82 67.0 83 45.0 84 27.5 85 17.5 86 13.5 87 12.0 88 9.0 89 7.0 90 5.5 91 4.0 92 3.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.001907742710056099 4 0.010614508311590326 5 0.01831719880256871 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.003938401111016497 26-27 0.04225826928097221 28-29 0.08755357756238892 30-31 0.08482091692295568 32-33 0.03556818407912141 34-35 0.002849944422467081 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 8.639744489767322E-5 56-57 2.699582088812757E-4 58-59 8.033616507603737E-6 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 3.460849486271502E-5 72-73 0.012460655502082337 74-75 0.02561695036682821 76-77 0.004811824315580251 78-79 0.0 80-81 0.0 82-83 0.005943762845144646 84-85 0.04330779440422236 86-87 0.04120388196428274 88-89 0.010875726322920706 90-91 1.8140031880628662E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 71.0 20-21 395.0 22-23 920.0 24-25 1708.0 26-27 3308.0 28-29 7218.0 30-31 16993.0 32-33 21931.0 34-35 29393.0 36-37 42582.0 38-39 49521.0 40-41 51349.0 42-43 59883.0 44-45 70096.0 46-47 68563.0 48-49 60234.0 50-51 53530.0 52-53 52924.0 54-55 65128.0 56-57 73875.0 58-59 71477.0 60-61 73444.0 62-63 74609.0 64-65 78544.0 66-67 86687.0 68-69 64498.0 70-71 53994.0 72-73 51699.0 74-75 52527.0 76-77 52381.0 78-79 54378.0 80-81 54994.0 82-83 52715.0 84-85 53482.0 86-87 55905.0 88-89 58445.0 90-91 60932.0 92-93 62439.0 94-95 75165.0 96-97 212454.0 98-99 401982.0 100-101 4439217.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.51411125476511 #Duplication Level Percentage of deduplicated Percentage of total 1 88.8692507728947 75.10705746948044 2 7.808826082751523 13.199119926535477 3 1.8912569331072195 4.795136965679082 4 0.6993376935001314 2.364156145324837 5 0.32326201008850447 1.3660100742529433 6 0.14664862969462086 0.7436327163222022 7 0.08354034381746574 0.49422365381554395 8 0.052182020055886305 0.35280936388012474 9 0.032358334773529 0.2461262314562068 >10 0.09153463057049373 1.1216703697409633 >50 0.0011993177898566975 0.06700746189246624 >100 5.503749769660095E-4 0.09668137179087143 >500 2.6427989567940113E-5 0.019029744190981322 >1k 2.6427989469993553E-5 0.027338505637835187 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 2.8687860301595477E-5 4.303179045239321E-5 0.0 0.0 0.0 3 2.8687860301595477E-5 4.303179045239321E-5 0.0 0.0 0.0 4 2.8687860301595477E-5 1.864710919603706E-4 0.0 0.0 0.0 5 2.8687860301595477E-5 1.864710919603706E-4 0.0 1.4343930150797738E-5 0.0 6 2.8687860301595477E-5 2.0081502211116833E-4 0.0 4.303179045239321E-5 0.0 7 2.8687860301595477E-5 2.0081502211116833E-4 0.0 5.7375720603190954E-5 0.0 8 2.8687860301595477E-5 2.2950288241276382E-4 0.0 5.7375720603190954E-5 0.0 9 2.8687860301595477E-5 3.872861140715389E-4 0.0 5.7375720603190954E-5 0.0 10-11 2.8687860301595477E-5 3.872861140715389E-4 0.0 7.889161582938755E-5 0.0 12-13 3.585982537699434E-5 4.0163004422233666E-4 0.0 8.606358090478642E-5 0.0 14-15 4.303179045239321E-5 5.092095203533197E-4 0.0 8.606358090478642E-5 0.0 16-17 4.303179045239321E-5 5.163814854287186E-4 0.0 1.0757947613098304E-4 0.0 18-19 4.303179045239321E-5 5.52241310805713E-4 0.0 1.1475144120638191E-4 1.4343930150797738E-5 20-21 4.303179045239321E-5 5.881011361827072E-4 0.0 1.1475144120638191E-4 2.8687860301595477E-5 22-23 4.303179045239321E-5 6.741647170874937E-4 0.0 1.1475144120638191E-4 2.8687860301595477E-5 24-25 4.303179045239321E-5 7.10024542464488E-4 0.0 1.5061126658337624E-4 2.8687860301595477E-5 26-27 5.7375720603190954E-5 7.315404376906846E-4 0.0 1.864710919603706E-4 2.8687860301595477E-5 28-29 5.7375720603190954E-5 7.315404376906846E-4 0.0 4.446618346747299E-4 2.8687860301595477E-5 30-31 5.7375720603190954E-5 8.319479487462688E-4 0.0 0.0012120620977424089 2.8687860301595477E-5 32-33 5.7375720603190954E-5 8.319479487462688E-4 0.0 0.0027612065540285648 2.8687860301595477E-5 34-35 5.7375720603190954E-5 9.395274248772519E-4 0.0 0.004898452146497428 2.8687860301595477E-5 36-37 5.7375720603190954E-5 0.001047106901008235 0.0 0.007946537303541947 2.8687860301595477E-5 38-39 7.171965075398868E-5 0.0010614508311590327 0.0 0.012199512593253477 2.8687860301595477E-5 40-41 7.171965075398868E-5 0.0011188265517622234 0.0 0.016710678625679366 2.8687860301595477E-5 42-43 7.171965075398868E-5 0.0011403424469884202 0.0 0.02069829120760114 2.8687860301595477E-5 44-45 7.889161582938755E-5 0.0012694378183455996 0.0 0.025438960122439788 2.8687860301595477E-5 46-47 8.606358090478642E-5 0.0013913612246273805 0.0 0.030387616024465006 2.8687860301595477E-5 48-49 8.606358090478642E-5 0.0013985331897027795 0.0 0.03509242511392666 2.8687860301595477E-5 50-51 8.606358090478642E-5 0.0015491444562861557 0.0 0.04052877464107901 2.8687860301595477E-5 52-53 8.606358090478642E-5 0.0015634883864369534 0.0 0.045936436307929755 2.8687860301595477E-5 54-55 9.32355459801853E-5 0.0015706603515123524 0.0 0.05097115579085976 2.8687860301595477E-5 56-57 1.1475144120638191E-4 0.0015778323165877512 0.0 0.05599153134363897 5.020375552779208E-5 58-59 1.2909537135717965E-4 0.0015778323165877512 0.0 0.06106211065194597 7.171965075398868E-5 60-61 1.2909537135717965E-4 0.0016065201768893467 0.0 0.06610400209995138 7.171965075398868E-5 62-63 1.2909537135717965E-4 0.0016638958974925376 0.0 0.07149014787157593 7.171965075398868E-5 64-65 1.2909537135717965E-4 0.0018216791291513128 0.0 0.07642445984345034 7.171965075398868E-5 66-67 1.362673364325785E-4 0.0018360230593021105 0.0 0.08147352325653115 7.171965075398868E-5 68-69 1.577832316587751E-4 0.001864710919603706 0.0 0.08675208955202472 7.171965075398868E-5 70-71 1.577832316587751E-4 0.0018790548497545035 0.0 0.09101940877188705 7.171965075398868E-5 72-73 1.577832316587751E-4 0.0018790548497545035 0.0 0.09456235951913408 7.171965075398868E-5 74-75 1.577832316587751E-4 0.0019149146751314978 0.0 0.09814834205683352 7.889161582938755E-5 76-77 1.577832316587751E-4 0.0020081502211116834 0.0 0.10129683472493362 8.606358090478642E-5 78-79 1.577832316587751E-4 0.002036838081413279 0.0 0.1033265008412715 8.606358090478642E-5 80-81 1.7212716180957285E-4 0.002036838081413279 0.0 0.10400066555835899 8.606358090478642E-5 82-83 1.864710919603706E-4 0.0020440100464886777 0.0 0.10438795167243053 8.606358090478642E-5 84-85 1.864710919603706E-4 0.002079869871865672 0.0 0.10456007883424011 8.606358090478642E-5 86-87 2.0081502211116833E-4 0.00209421380201647 0.0 0.1046533143802203 8.606358090478642E-5 88 2.0081502211116833E-4 0.0021659334527704584 0.0 0.10466765831037109 8.606358090478642E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 8855 0.0 53.73445 1 GGTATCA 9960 0.0 46.214222 1 TATACAC 12240 0.0 41.170864 3 TTATACA 12310 0.0 39.505154 2 GTATCAA 18335 0.0 37.325138 1 ATCAACG 22220 0.0 30.308142 3 TCAACGC 22385 0.0 30.084093 4 TATCAAC 22705 0.0 29.919458 2 CAACGCA 22580 0.0 29.746761 5 AACGCAG 23165 0.0 29.135418 6 TACACAT 17500 0.0 28.81633 5 ACACATC 18500 0.0 26.324371 6 ACATCTC 18425 0.0 26.203863 8 ATACACA 20490 0.0 25.801655 4 ACGCAGA 26470 0.0 25.38669 7 CGCAGAG 26665 0.0 25.169577 8 CACATCT 19530 0.0 24.635347 7 CATCTCC 21630 0.0 22.379314 9 GCAGAGT 30340 0.0 22.024076 9 GTGGTAT 5175 0.0 20.35128 1 >>END_MODULE