##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138628_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6585276 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.82036090818365 33.0 33.0 33.0 33.0 33.0 2 32.816916557483694 33.0 33.0 33.0 33.0 33.0 3 32.81314313933083 33.0 33.0 33.0 33.0 33.0 4 36.76226144507839 37.0 37.0 37.0 37.0 37.0 5 36.777498771501755 37.0 37.0 37.0 37.0 37.0 6 36.784098494884645 37.0 37.0 37.0 37.0 37.0 7 36.770429819494275 37.0 37.0 37.0 37.0 37.0 8 36.768594512971056 37.0 37.0 37.0 37.0 37.0 9 36.766972713064725 37.0 37.0 37.0 37.0 37.0 10-11 36.744283459038016 37.0 37.0 37.0 37.0 37.0 12-13 36.72710354129425 37.0 37.0 37.0 37.0 37.0 14-15 39.042479237013 40.0 40.0 40.0 37.0 40.0 16-17 38.99246880464843 40.0 40.0 40.0 37.0 40.0 18-19 39.02626700839873 40.0 40.0 40.0 37.0 40.0 20-21 39.04327994813538 40.0 40.0 40.0 37.0 40.0 22-23 39.07562561345731 40.0 40.0 40.0 37.0 40.0 24-25 39.07837625433508 40.0 40.0 40.0 37.0 40.0 26-27 38.99065022221565 40.0 40.0 40.0 37.0 40.0 28-29 38.91787274475749 40.0 40.0 40.0 37.0 40.0 30-31 38.84035423169027 40.0 38.5 40.0 37.0 40.0 32-33 38.80907196876022 40.0 37.0 40.0 37.0 40.0 34-35 38.78430186503236 40.0 37.0 40.0 37.0 40.0 36-37 38.750038352874704 40.0 37.0 40.0 37.0 40.0 38-39 38.699049635723455 40.0 37.0 40.0 37.0 40.0 40-41 38.66057589585817 40.0 37.0 40.0 37.0 40.0 42-43 38.59620898351146 40.0 37.0 40.0 37.0 40.0 44-45 38.506315455048735 40.0 37.0 40.0 37.0 40.0 46-47 38.41889826936033 40.0 37.0 40.0 37.0 40.0 48-49 38.37705014227956 40.0 37.0 40.0 37.0 40.0 50-51 38.31601100647151 40.0 37.0 40.0 37.0 40.0 52-53 38.24805596026 40.0 37.0 40.0 37.0 40.0 54-55 38.18201562276898 40.0 37.0 40.0 37.0 40.0 56-57 38.06705590786727 40.0 37.0 40.0 37.0 40.0 58-59 37.94942225727312 40.0 37.0 40.0 35.0 40.0 60-61 37.77712935201095 40.0 37.0 40.0 33.0 40.0 62-63 37.58814190945932 38.5 37.0 40.0 33.0 40.0 64-65 37.36631950310466 37.0 37.0 40.0 33.0 40.0 66-67 37.13539601473845 37.0 37.0 40.0 33.0 40.0 68-69 36.89445443599075 37.0 37.0 40.0 33.0 40.0 70-71 36.63319025620656 37.0 37.0 40.0 33.0 40.0 72-73 36.38699130162835 37.0 37.0 37.0 33.0 40.0 74-75 36.146291089674975 37.0 37.0 37.0 33.0 40.0 76-77 34.52735377547431 35.0 33.0 37.0 30.0 37.0 78-79 35.7627941361188 37.0 35.0 37.0 33.0 37.0 80-81 35.877538047795255 37.0 37.0 37.0 33.0 37.0 82-83 35.80876668034272 37.0 37.0 37.0 33.0 37.0 84-85 35.68940756740526 37.0 37.0 37.0 33.0 37.0 86-87 35.57938225881023 37.0 37.0 37.0 33.0 37.0 88-89 35.50532179881327 37.0 35.0 37.0 33.0 37.0 90-91 35.43632045349152 37.0 33.0 37.0 33.0 37.0 92-93 35.364330768278684 37.0 33.0 37.0 33.0 37.0 94-95 35.32392064524231 37.0 33.0 37.0 33.0 37.0 96-97 35.289019799340785 37.0 33.0 37.0 33.0 37.0 98-99 35.248424129865654 37.0 33.0 37.0 33.0 37.0 100 35.18764266321224 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 4.0 20 25.0 21 92.0 22 380.0 23 1246.0 24 2841.0 25 5794.0 26 10701.0 27 17468.0 28 26395.0 29 37327.0 30 52146.0 31 71807.0 32 96859.0 33 133626.0 34 192326.0 35 298402.0 36 600043.0 37 1877350.0 38 3030746.0 39 129697.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.87411431198935 20.116347439348022 14.493333309036704 23.51620493962592 2 14.637564165875508 20.575568890354788 41.9992571306047 22.787609813165005 3 18.360615657490218 25.998492062829197 30.215249299371084 25.425642980309497 4 12.449963573283917 18.024914142450406 38.43795376776173 31.087168516503954 5 13.396749341068281 37.59218741029583 35.199924302969166 13.811138945666727 6 29.934219917282128 37.47991731857556 18.688510549899505 13.897352214242806 7 26.591110228333637 32.72860545252773 22.58209071267476 18.098193606463873 8 24.62871715627409 36.421586581944325 20.86787250830489 18.081823753476694 9 25.550607142358196 17.10547895031279 21.216513931990093 36.127399975338925 10-11 24.439514759897687 26.7771540630947 28.20546169970704 20.577869477300574 12-13 25.3430835700736 24.308145930405956 28.533291543133497 21.815478956386947 14-15 22.40660831831498 25.67146768032198 26.46918671290315 25.452737288459893 16-17 21.68834685136963 28.88231260162824 27.14212737628613 22.287213170716 18-19 21.60133455302405 27.793064406108414 29.276206494610097 21.329394546257436 20-21 22.48158921571084 26.924467000296882 29.180381267810002 21.41356251618228 22-23 22.31741109748341 26.9181797361977 29.032786666156383 21.7316225001625 24-25 22.05005763939597 27.12052444027354 29.138077987036947 21.691339933293545 26-27 21.943608191085815 27.34900127154424 29.074280832667664 21.63310970470228 28-29 21.71387886124669 27.31653497944328 29.189308908180543 21.780277251129483 30-31 22.07636733308264 27.262272766334284 29.02867226120467 21.63268763937841 32-33 22.07606532098466 27.214407716074714 28.994265234342947 21.71526172859768 34-35 21.994827580003047 27.312891752707152 29.096290291870957 21.59599037541884 36-37 21.916496244744977 27.392417324828656 28.89850287357007 21.7925835568563 38-39 21.87900205827879 27.265267528260708 29.03062312695547 21.82510728650504 40-41 22.05757036746743 27.129441938708947 28.93111629327713 21.88187140054649 42-43 22.015124764779983 27.234362384903193 28.756247663507363 21.994265186809457 44-45 22.05969795304863 27.539246748400576 28.458796799229972 21.942258499320822 46-47 22.249648156070286 27.403930447717844 27.97537096496827 22.371050431243596 48-49 22.257522460451863 27.511544623313306 27.979259521255205 22.251673394979623 50-51 22.14965509095995 27.70111817410632 27.809268276000036 22.339958458933694 52-53 22.21994793172796 27.764564863007134 27.770397759970123 22.245089445294788 54-55 22.2596901667236 27.695925934524425 27.663572866538207 22.38081103221377 56-57 22.406343913658976 27.881209173064725 27.455946716584467 22.25650019669183 58-59 22.18550937541878 28.061268578600167 27.708262095183056 22.044959950797995 60-61 22.437742146986945 28.114714873253348 27.380086683299414 22.06745629646029 62-63 22.313894887419387 28.17206769217342 27.344101537916504 22.16993588249069 64-65 22.26793278570807 28.10872861413084 27.339395559568374 22.283943040592714 66-67 22.359521395694674 27.93931748581159 27.31771230810808 22.38344881038565 68-69 22.34407517117948 27.81104352480874 27.47258264452583 22.372298659485956 70-71 22.343682420080594 27.62434526779008 27.4817386765434 22.55023363558593 72-73 22.407628890171797 27.685607822022074 27.477404359036743 22.429358928769382 74-75 22.356506352414034 27.829465658179025 27.38984265316862 22.42418533623832 76-77 22.41397247957508 27.74458733957239 27.308798324555667 22.532641856296863 78-79 22.332054755273848 27.763554774980015 27.335215587791627 22.569174881954513 80-81 22.39442446674829 27.783101747631534 27.38476819211678 22.437705593503395 82-83 22.449554144307903 27.742707635246404 27.514069718250195 22.293668502195498 84-85 22.638430916625644 27.722187238193268 27.333804399558577 22.30557744562251 86-87 22.321249725667194 27.832611342716707 27.428174618494193 22.417964313121907 88-89 22.49649660492245 27.695796022619025 27.375524300360638 22.43218307209789 90-91 22.46870438035567 27.776149447670317 27.360992054063992 22.394154117910016 92-93 22.491440923346527 27.767490787664332 27.407150745100704 22.333917543888433 94-95 22.315753386023705 27.804208082292668 27.47631673587995 22.40372179580368 96-97 22.39863348890137 27.904067519044002 27.523894463040023 22.173404529014608 98-99 23.47585436477416 29.824610785257477 27.717114453516057 18.982420396452305 100 22.438778448689085 30.778452369232863 21.5099322576876 25.27283692439045 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1853.0 1 1634.5 2 2102.5 3 2982.0 4 4291.5 5 7203.0 6 9478.0 7 10778.0 8 11469.5 9 11107.5 10 10082.5 11 9245.5 12 10352.0 13 14093.0 14 22445.5 15 33551.0 16 42551.0 17 47759.5 18 48211.0 19 44633.0 20 39377.5 21 33939.0 22 30717.5 23 31377.0 24 35498.5 25 42829.5 26 52739.5 27 63986.5 28 76359.5 29 90848.0 30 104381.5 31 117006.0 32 132626.0 33 147309.5 34 161094.0 35 175823.0 36 190740.5 37 205667.0 38 216281.0 39 222687.5 40 230102.0 41 237208.5 42 242871.0 43 249689.0 44 257199.0 45 267466.5 46 279096.0 47 285991.5 48 285628.5 49 280331.0 50 274188.5 51 266615.5 52 254463.0 53 240974.5 54 229059.5 55 213802.0 56 195551.0 57 176241.0 58 156926.0 59 136919.0 60 113224.0 61 90374.5 62 71698.0 63 56043.0 64 42247.5 65 31178.5 66 23388.5 67 17880.0 68 13544.0 69 9812.0 70 7001.5 71 4968.5 72 3360.5 73 2183.0 74 1447.5 75 974.5 76 616.5 77 365.5 78 246.5 79 185.0 80 122.0 81 79.5 82 63.5 83 44.0 84 24.0 85 13.0 86 9.0 87 6.0 88 4.0 89 3.5 90 4.0 91 3.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.001837432478152776 4 0.012497577929915162 5 0.01722023496053924 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.004139171240704048 26-27 0.04279464125699706 28-29 0.08944780442773853 30-31 0.08551939349204647 32-33 0.03525494399080624 34-35 0.0031081632385897297 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.4924509344318215E-4 56-57 3.177834105351891E-4 58-59 2.5316611655076017E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 2.675879780213938E-5 72-73 0.012946367401352774 74-75 0.02579266867661383 76-77 0.004995777835746694 78-79 0.0 80-81 0.0 82-83 0.005848425546486943 84-85 0.04259233518241693 86-87 0.03995926127937049 88-89 0.011168997570380399 90-91 1.4659836095213876E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 83.0 20-21 358.0 22-23 955.0 24-25 1835.0 26-27 3110.0 28-29 6628.0 30-31 15523.0 32-33 19686.0 34-35 26435.0 36-37 38349.0 38-39 45929.0 40-41 47128.0 42-43 55058.0 44-45 65168.0 46-47 63770.0 48-49 56888.0 50-51 49194.0 52-53 46548.0 54-55 50485.0 56-57 53859.0 58-59 52838.0 60-61 52535.0 62-63 51266.0 64-65 53941.0 66-67 58075.0 68-69 51492.0 70-71 49130.0 72-73 46260.0 74-75 46648.0 76-77 46566.0 78-79 49776.0 80-81 50002.0 82-83 48133.0 84-85 47794.0 86-87 50031.0 88-89 53570.0 90-91 56610.0 92-93 58101.0 94-95 70311.0 96-97 205789.0 98-99 391767.0 100-101 4347652.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.20756062890283 #Duplication Level Percentage of deduplicated Percentage of total 1 88.2263557442262 73.41099844654849 2 8.091429007023528 13.465361393527461 3 2.0886526418053544 5.21375073977211 4 0.7650089096205417 2.546181009156082 5 0.3395857987538654 1.4128052969263323 6 0.17476074451961884 0.8724849147101027 7 0.0971097716213461 0.5656187046889443 8 0.06380919105536093 0.424752570673615 9 0.0365383581655069 0.27362408871032834 >10 0.11321441096397658 1.4122042853310706 >50 0.002287691529527023 0.1276862364844236 >100 0.0010637524896042298 0.1757677559192254 >500 1.839782256144104E-4 0.09876455755182635 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5185392381427901E-5 2 0.0 3.0370784762855803E-5 0.0 0.0 1.5185392381427901E-5 3 0.0 3.0370784762855803E-5 0.0 0.0 1.5185392381427901E-5 4 0.0 1.51853923814279E-4 0.0 0.0 1.5185392381427901E-5 5 0.0 1.51853923814279E-4 0.0 0.0 1.5185392381427901E-5 6 0.0 1.51853923814279E-4 0.0 1.5185392381427901E-5 1.5185392381427901E-5 7 0.0 1.51853923814279E-4 1.5185392381427901E-5 1.5185392381427901E-5 3.0370784762855803E-5 8 0.0 1.51853923814279E-4 1.5185392381427901E-5 1.5185392381427901E-5 4.55561771442837E-5 9 0.0 2.277808857214185E-4 1.5185392381427901E-5 1.5185392381427901E-5 6.0741569525711605E-5 10-11 0.0 2.277808857214185E-4 1.5185392381427901E-5 1.5185392381427901E-5 6.0741569525711605E-5 12-13 0.0 2.277808857214185E-4 1.5185392381427901E-5 3.796348095356975E-5 6.0741569525711605E-5 14-15 0.0 2.885224552471301E-4 1.5185392381427901E-5 4.55561771442837E-5 6.833426571642556E-5 16-17 0.0 3.03707847628558E-4 1.5185392381427901E-5 4.55561771442837E-5 9.11123542885674E-5 18-19 0.0 3.188932400099859E-4 1.5185392381427901E-5 4.55561771442837E-5 9.11123542885674E-5 20-21 0.0 3.188932400099859E-4 1.5185392381427901E-5 4.55561771442837E-5 9.11123542885674E-5 22-23 0.0 3.644494171542696E-4 1.5185392381427901E-5 5.314887333499765E-5 1.2148313905142321E-4 24-25 0.0 3.8722750572641146E-4 1.5185392381427901E-5 1.51853923814279E-4 1.7463201238642086E-4 26-27 0.0 3.948202019171254E-4 1.5185392381427901E-5 2.5055897429356034E-4 1.822247085771348E-4 28-29 0.0 3.948202019171254E-4 1.5185392381427901E-5 6.605645685921137E-4 1.822247085771348E-4 30-31 0.0 4.4037637906140913E-4 1.5185392381427901E-5 0.0018602105667249176 1.822247085771348E-4 32-33 0.0 4.4037637906140913E-4 1.5185392381427901E-5 0.004434134575376947 1.822247085771348E-4 34-35 0.0 5.846376066849742E-4 1.5185392381427901E-5 0.0072510248621318225 1.974101009585627E-4 36-37 0.0 7.440842266899671E-4 1.5185392381427901E-5 0.011434600463215209 2.125954933399906E-4 38-39 0.0 7.440842266899671E-4 1.5185392381427901E-5 0.017835243351987072 2.125954933399906E-4 40-41 0.0 8.959381505042461E-4 1.5185392381427901E-5 0.024326998595047496 2.125954933399906E-4 42-43 0.0 9.490870238392437E-4 1.5185392381427901E-5 0.030545416775242223 2.125954933399906E-4 44-45 0.0 0.0011161263400349506 1.5185392381427901E-5 0.03709032089163765 2.125954933399906E-4 46-47 0.0 0.00123001678289566 1.5185392381427901E-5 0.04420467722233662 2.125954933399906E-4 48-49 0.0 0.00123001678289566 1.5185392381427901E-5 0.05131903355303559 2.4296627810284642E-4 50-51 0.0 0.001366685314328511 1.5185392381427901E-5 0.058342277529446 2.4296627810284642E-4 52-53 0.0 0.001381870706709939 1.5185392381427901E-5 0.0650921844429907 2.657443666749883E-4 54-55 0.0 0.0013970560990913669 1.5185392381427901E-5 0.07159912507843255 2.9611515143784404E-4 56-57 0.0 0.0014274268838542228 1.5185392381427901E-5 0.07751383541099872 3.03707847628558E-4 58-59 0.0 0.0014274268838542228 1.5185392381427901E-5 0.0834437311359463 3.03707847628558E-4 60-61 0.0 0.0014577976686170784 1.5185392381427901E-5 0.08941159034184748 3.03707847628558E-4 62-63 0.0 0.0015185392381427902 1.5185392381427901E-5 0.09530352258584152 3.03707847628558E-4 64-65 0.0 0.0016400223771942132 1.5185392381427901E-5 0.10068674418505769 3.03707847628558E-4 66-67 0.0 0.0016476150733849273 1.5185392381427901E-5 0.10647237868238173 3.03707847628558E-4 68-69 0.0 0.0017007639467199248 1.5185392381427901E-5 0.11221245700256147 3.03707847628558E-4 70-71 0.0 0.0017159493391013527 1.5185392381427901E-5 0.1175121589436798 3.03707847628558E-4 72-73 0.0 0.0017159493391013527 1.5185392381427901E-5 0.12106554076093394 3.3407863239141383E-4 74-75 0.0 0.0017235420352920668 1.5185392381427901E-5 0.12402669227531238 3.3407863239141383E-4 76-77 0.0 0.0017842836048177783 1.5185392381427901E-5 0.12701062187826295 3.3407863239141383E-4 78-79 0.0 0.001837432478152776 1.5185392381427901E-5 0.12868101504022003 3.3407863239141383E-4 80-81 0.0 0.001837432478152776 1.5185392381427901E-5 0.12939472848214714 3.4167132858212775E-4 82-83 0.0 0.0018450251743434899 1.5185392381427901E-5 0.12989584643073426 3.568567209635557E-4 84-85 0.0 0.0018678032629156319 1.5185392381427901E-5 0.1300780711393114 3.644494171542696E-4 86-87 0.0 0.0018678032629156319 1.5185392381427901E-5 0.13016159079740924 3.644494171542696E-4 88 0.0 0.0020652133638741944 1.5185392381427901E-5 0.13016918349359996 3.644494171542696E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10520 0.0 49.19541 1 GTATCAA 19020 0.0 36.47356 1 ATCAACG 23095 0.0 29.468103 3 TCAACGC 23470 0.0 29.033226 4 TATCAAC 23730 0.0 29.019487 2 CAACGCA 23705 0.0 28.707838 5 AACGCAG 24265 0.0 28.127016 6 CTTATAC 4905 0.0 25.88027 1 ACGCAGA 27375 0.0 24.838552 7 CGCAGAG 27605 0.0 24.616228 8 GTGGTAT 5265 0.0 24.191317 1 TGGTATC 5160 0.0 22.791174 2 GCAGAGT 31575 0.0 21.400188 9 GTACATG 22985 0.0 21.278675 1 TACATGG 22535 0.0 21.25143 2 TATACAC 6995 0.0 21.121666 3 ACATGGG 23115 0.0 20.038605 3 GAGTACT 18910 0.0 19.965137 12-13 CAGAGTA 31050 0.0 19.028103 10-11 AGAGTAC 28855 0.0 18.460375 10-11 >>END_MODULE