##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138627_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6621624 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.82697688663687 33.0 33.0 33.0 33.0 33.0 2 32.822184255705245 33.0 33.0 33.0 33.0 33.0 3 32.81866351819433 33.0 33.0 33.0 33.0 33.0 4 36.76968399292983 37.0 37.0 37.0 37.0 37.0 5 36.7820231109468 37.0 37.0 37.0 37.0 37.0 6 36.791661682994985 37.0 37.0 37.0 37.0 37.0 7 36.77733287181513 37.0 37.0 37.0 37.0 37.0 8 36.77595284782102 37.0 37.0 37.0 37.0 37.0 9 36.77475450131267 37.0 37.0 37.0 37.0 37.0 10-11 36.751960395214226 37.0 37.0 37.0 37.0 37.0 12-13 36.73637871917826 37.0 37.0 37.0 37.0 37.0 14-15 39.063868395426866 40.0 40.0 40.0 37.0 40.0 16-17 39.01400562762247 40.0 40.0 40.0 37.0 40.0 18-19 39.04155015446362 40.0 40.0 40.0 37.0 40.0 20-21 39.056690640831064 40.0 40.0 40.0 37.0 40.0 22-23 39.09104338228477 40.0 40.0 40.0 37.0 40.0 24-25 39.09224298825232 40.0 40.0 40.0 37.0 40.0 26-27 39.00948260433535 40.0 40.0 40.0 37.0 40.0 28-29 38.940211882150436 40.0 40.0 40.0 37.0 40.0 30-31 38.86996105447837 40.0 40.0 40.0 37.0 40.0 32-33 38.84297570278603 40.0 38.5 40.0 37.0 40.0 34-35 38.82272733170692 40.0 37.0 40.0 37.0 40.0 36-37 38.7913711260327 40.0 37.0 40.0 37.0 40.0 38-39 38.74513730273836 40.0 37.0 40.0 37.0 40.0 40-41 38.69967672220092 40.0 37.0 40.0 37.0 40.0 42-43 38.632229774182434 40.0 37.0 40.0 37.0 40.0 44-45 38.54489368862451 40.0 37.0 40.0 37.0 40.0 46-47 38.46264872895861 40.0 37.0 40.0 37.0 40.0 48-49 38.411800022270235 40.0 37.0 40.0 37.0 40.0 50-51 38.355478147567865 40.0 37.0 40.0 37.0 40.0 52-53 38.273050330345455 40.0 37.0 40.0 37.0 40.0 54-55 38.19411103837477 40.0 37.0 40.0 37.0 40.0 56-57 38.07806232531826 40.0 37.0 40.0 37.0 40.0 58-59 37.941023623502545 40.0 37.0 40.0 35.0 40.0 60-61 37.76134060714375 40.0 37.0 40.0 33.0 40.0 62-63 37.56254673054872 37.0 37.0 40.0 33.0 40.0 64-65 37.32655068451719 37.0 37.0 40.0 33.0 40.0 66-67 37.08442064972964 37.0 37.0 40.0 33.0 40.0 68-69 36.83607307742952 37.0 37.0 40.0 33.0 40.0 70-71 36.572861067235436 37.0 37.0 38.5 33.0 40.0 72-73 36.329992554086814 37.0 37.0 37.0 33.0 40.0 74-75 36.09471837943079 37.0 37.0 37.0 33.0 40.0 76-77 34.46626728168616 35.0 33.0 37.0 30.0 37.0 78-79 35.72044909113791 37.0 35.0 37.0 33.0 37.0 80-81 35.84931680055435 37.0 37.0 37.0 33.0 37.0 82-83 35.7901809053354 37.0 37.0 37.0 33.0 37.0 84-85 35.67393650286016 37.0 37.0 37.0 33.0 37.0 86-87 35.56755479957931 37.0 37.0 37.0 33.0 37.0 88-89 35.49715755740098 37.0 35.0 37.0 33.0 37.0 90-91 35.435310832146996 37.0 33.0 37.0 33.0 37.0 92-93 35.36355782022557 37.0 33.0 37.0 33.0 37.0 94-95 35.323316576773905 37.0 33.0 37.0 33.0 37.0 96-97 35.285460199653656 37.0 33.0 37.0 33.0 37.0 98-99 35.24126796396567 37.0 33.0 37.0 33.0 37.0 100 35.179863449654 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 6.0 20 17.0 21 85.0 22 310.0 23 1014.0 24 2494.0 25 5250.0 26 9776.0 27 16151.0 28 24570.0 29 36022.0 30 50173.0 31 69691.0 32 94351.0 33 130647.0 34 189673.0 35 298049.0 36 609314.0 37 1940611.0 38 3007192.0 39 136227.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.9045992342664 20.061679732947688 14.538956002334173 23.494765030451745 2 14.801837132401358 20.39179512457971 41.68850420984339 23.117863533175548 3 18.34648390081181 25.83055778482081 30.053640300390516 25.769318013976868 4 12.732354458216562 17.670138267431824 38.45702940627849 31.14047786807313 5 13.686037891343187 37.52591231592513 35.0142529066202 13.77379688611148 6 30.39878132615201 37.26295845248839 18.478050097679965 13.860210123679629 7 27.010624583938924 32.57478829966788 22.58082005260341 17.83376706378979 8 25.00209918291948 36.19254128594435 20.613236269531463 18.192123261604706 9 25.95523394260985 16.9388053444291 21.173023415403836 35.93293729755722 10-11 24.78999864685763 26.6079741163195 28.052295026114436 20.54973221070843 12-13 25.51054695947701 24.08959644945107 28.437978356971037 21.96187823410088 14-15 22.660528595401974 25.35459579100233 26.347365842578803 25.637509771016898 16-17 21.947365178089242 28.602243195928974 27.024057844420042 22.426333781561745 18-19 22.0182994383251 27.716236983555696 28.89695941660233 21.36850416151687 20-21 22.943910579393116 26.741261364637754 28.81345936473486 21.50136869123427 22-23 22.777650362331016 26.611134341250352 28.62764300311353 21.983572293305105 24-25 22.41479599871745 26.75284221053224 28.756693635706842 22.075668155043466 26-27 22.337412793285978 26.977283889627678 28.583636437021376 22.101666880064965 28-29 22.226533293161683 27.151991530662382 28.58797916380726 22.033496012368673 30-31 22.49726835324924 26.91535372609345 28.562046906893997 22.025331013763317 32-33 22.339979537836932 27.092102813714448 28.472235930137106 22.09568171831151 34-35 22.41265694550288 27.09938881792037 28.49289979793771 21.995054438639038 36-37 22.452499270561262 27.006530293625296 28.373774661493762 22.167195774319687 38-39 22.31013982667225 27.154208688041386 28.454001259341783 22.081650225944582 40-41 22.547272342218015 27.07487473556579 28.274023270986206 22.103829651229994 42-43 22.412810680529873 27.154181868055865 28.10053407810203 22.332473373312233 44-45 22.56551979576076 27.293316194987185 27.857206516413267 22.283957492838784 46-47 22.61372729196476 27.24021069315981 27.53125751056386 22.61480450431156 48-49 22.628376342423543 27.41894190592745 27.428518410023024 22.524163341625982 50-51 22.515643456105586 27.458023799529474 27.403536088143515 22.622796656221425 52-53 22.683189208944516 27.43767454190962 27.16536927793431 22.71376697121156 54-55 22.690542963830676 27.315746332910244 27.23316728818582 22.760543415073254 56-57 22.815722532755274 27.354265321386084 27.200956668659725 22.62905547719891 58-59 22.606525762311044 27.554059207601494 27.27930504436607 22.56010998572139 60-61 22.77357012274745 27.415655642346685 27.227744180603935 22.58303005430193 62-63 22.748627310328693 27.53462489222614 27.04785732476581 22.668890472679358 64-65 22.68193143018316 27.489650526562748 27.110880715499132 22.71753732775496 66-67 22.81384930177754 27.511197447467705 26.917458965034996 22.757494285719755 68-69 22.710064065655875 27.41180339232323 27.079620541222273 22.798512000798624 70-71 22.682992541649106 27.192521227419597 27.16387586560402 22.960610365327277 72-73 22.796447874815957 27.247197903426596 27.06779709889001 22.888557122867432 74-75 22.688991784433544 27.481003372247688 27.017720364903713 22.81228447841506 76-77 22.846944232266218 27.38991415354019 26.84307796802079 22.920063646172803 78-79 22.779317864551427 27.415764055126463 26.81937536044244 22.98554271987967 80-81 22.730439159417195 27.410534050792005 26.943217179068746 22.91580961072205 82-83 22.833794666317083 27.333697566648503 27.094526245646012 22.73798152138841 84-85 22.97422388878359 27.374532157102248 26.899275679492778 22.751968274621387 86-87 22.675917873410366 27.41622249033427 27.0413957205409 22.866463915714462 88-89 22.815101419710448 27.334770938844276 26.960552178334314 22.88957546311096 90-91 22.828291982916372 27.455262262352104 26.946740856093736 22.769704898637784 92-93 22.90089695172299 27.3984121429929 26.977554071095927 22.72313683418818 94-95 22.70680779251391 27.459649492343146 27.031617907034477 22.801924808108467 96-97 22.82167704361996 27.551250033183106 27.12442337969439 22.502649543502542 98-99 23.978833787391267 29.430888397227626 27.206709942238703 19.383567873142407 100 22.951166598823225 30.40227306368649 21.020311401398807 25.62624893609148 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1435.0 1 1315.0 2 1871.5 3 2712.5 4 3909.5 5 6557.5 6 8564.5 7 9727.0 8 10320.0 9 9856.5 10 8860.0 11 8034.5 12 8916.0 13 12345.5 14 20077.0 15 30182.5 16 38281.0 17 43153.5 18 43903.5 19 40869.5 20 36284.5 21 31633.5 22 28570.5 23 29368.5 24 34460.5 25 42676.5 26 53200.0 27 65048.0 28 76297.0 29 89124.0 30 101308.0 31 113022.5 32 127717.5 33 141465.5 34 155222.0 35 168393.0 36 181941.5 37 196271.5 38 205677.5 39 211213.5 40 219538.5 41 228782.5 42 235861.5 43 243686.0 44 252905.0 45 263381.0 46 272464.0 47 279089.5 48 282707.5 49 282077.5 50 278906.0 51 275140.5 52 268943.5 53 257061.5 54 244546.0 55 230687.0 56 214629.5 57 196666.0 58 176680.0 59 156733.5 60 131945.5 61 106557.0 62 85390.5 63 66024.5 64 48605.0 65 35661.0 66 26733.0 67 20349.5 68 15319.0 69 11034.0 70 7819.0 71 5377.0 72 3580.5 73 2358.5 74 1553.5 75 989.5 76 677.5 77 456.5 78 307.0 79 200.0 80 111.0 81 65.0 82 46.0 83 35.0 84 25.0 85 19.0 86 15.0 87 11.0 88 7.5 89 6.0 90 5.5 91 4.5 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0016612238931114178 4 0.011462444862468784 5 0.018424483178144817 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0037916103747221343 26-27 0.042762144411237046 28-29 0.08917924029447216 30-31 0.0858948044127538 32-33 0.03565485553408439 34-35 0.0029315534057835664 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 8.264509255093334E-5 56-57 2.3333327500001458E-4 58-59 8.40560896199303E-6 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 8.871278809034367E-6 72-73 0.013510993194094595 74-75 0.027674901674137296 76-77 0.005599003049176937 78-79 0.0 80-81 0.0 82-83 0.0058031056944617895 84-85 0.046205607462456874 86-87 0.043196676642471996 88-89 0.010819099717358277 90-91 9.787341620014487E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 77.0 20-21 411.0 22-23 895.0 24-25 1653.0 26-27 3048.0 28-29 6566.0 30-31 16213.0 32-33 20125.0 34-35 27553.0 36-37 40351.0 38-39 47186.0 40-41 49854.0 42-43 57434.0 44-45 67159.0 46-47 65246.0 48-49 58411.0 50-51 50146.0 52-53 47182.0 54-55 49342.0 56-57 51612.0 58-59 51411.0 60-61 50668.0 62-63 49437.0 64-65 52179.0 66-67 54402.0 68-69 53474.0 70-71 52706.0 72-73 50460.0 74-75 50714.0 76-77 50715.0 78-79 53345.0 80-81 53905.0 82-83 51857.0 84-85 51235.0 86-87 53675.0 88-89 57272.0 90-91 60158.0 92-93 61625.0 94-95 74035.0 96-97 210343.0 98-99 393864.0 100-101 4323680.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.06145499304331 #Duplication Level Percentage of deduplicated Percentage of total 1 87.85916629401883 72.09851020562935 2 8.160266186829743 13.392866328435643 3 2.170454137328634 5.343318735145751 4 0.8166841889620027 2.6807317126414185 5 0.3630398574031697 1.4895789459485536 6 0.21159660878369324 1.0418355353030186 7 0.11895114409679658 0.6832912770369198 8 0.07556264465185612 0.4960624450602893 9 0.05451631418519463 0.40263192566054623 >10 0.16610221031871944 2.096903721813442 >50 0.003018190319572312 0.16392784408067657 >100 6.092110470778943E-4 0.08842537379479867 >500 3.3012054654808425E-5 0.021915949449623096 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.0204070783843963E-5 0.0 0.0 0.0 3 0.0 4.530610617576594E-5 0.0 0.0 0.0 4 0.0 9.061221235153189E-5 0.0 0.0 0.0 5 0.0 9.061221235153189E-5 0.0 0.0 0.0 6 0.0 1.0571424774345387E-4 0.0 0.0 3.0204070783843963E-5 7 0.0 1.2081628313537585E-4 0.0 0.0 3.0204070783843963E-5 8 0.0 1.2081628313537585E-4 0.0 1.5102035391921982E-5 3.0204070783843963E-5 9 0.0 2.2653053087882974E-4 0.0 4.530610617576594E-5 3.0204070783843963E-5 10-11 0.0 2.2653053087882974E-4 0.0 9.816323004749288E-5 3.0204070783843963E-5 12-13 0.0 2.2653053087882974E-4 0.0 1.585713716151808E-4 3.775508847980495E-5 14-15 0.0 3.020407078384396E-4 0.0 2.0387747779094677E-4 6.795915926364892E-5 16-17 0.0 3.171427432303616E-4 0.0 2.2653053087882974E-4 1.2081628313537585E-4 18-19 0.0 3.397957963182446E-4 0.0 2.416325662707517E-4 1.3591831852729784E-4 20-21 0.0 3.7755088479804954E-4 0.0 2.491835839667127E-4 1.3591831852729784E-4 22-23 0.0 4.983671679334254E-4 0.0 2.7183663705459567E-4 1.661223893111418E-4 24-25 0.0 5.436732741091913E-4 0.0 3.020407078384396E-4 2.0387747779094677E-4 26-27 0.0 5.587753095011133E-4 0.0 4.0775495558189353E-4 2.1142849548690774E-4 28-29 0.0 5.587753095011133E-4 0.0 9.891833181708898E-4 2.1897951318286874E-4 30-31 0.0 6.267344687647622E-4 0.0 0.0027561214590257617 2.2653053087882974E-4 32-33 0.0 6.418365041566843E-4 0.0 0.006086120262944559 2.567346016626737E-4 34-35 0.0 7.6265278729206E-4 0.0 0.010299588137290792 3.171427432303616E-4 36-37 0.0 8.75918052731475E-4 0.0 0.016868973532776853 3.171427432303616E-4 38-39 0.0 8.834690704274359E-4 0.0 0.03377570215403351 3.171427432303616E-4 40-41 0.0 0.0010873465482183827 0.0 0.051286512190967054 3.322447786222836E-4 42-43 0.0 0.0011402036720901095 0.0 0.06223548785011049 3.397957963182446E-4 44-45 0.0 0.0013591831852729783 0.0 0.07563099324274528 3.473468140142056E-4 46-47 0.0 0.0015102035391921982 0.0 0.0907254776169713 3.473468140142056E-4 48-49 0.0 0.0015177545568881591 0.0 0.10535179889404775 3.7755088479804954E-4 50-51 0.0 0.001729183052375067 0.0 0.11864914105663504 3.7755088479804954E-4 52-53 0.0 0.001736734070071028 0.0 0.15088443560069253 4.153059732778545E-4 54-55 0.0 0.001736734070071028 0.0 0.19061789071683927 4.5306106175765947E-4 56-57 1.5102035391921982E-5 0.001736734070071028 0.0 0.22828236698429266 4.5306106175765947E-4 58-59 1.5102035391921982E-5 0.001736734070071028 0.0 0.25181133812490714 4.6061207945362044E-4 60-61 1.5102035391921982E-5 0.00175183610546295 0.0 0.26907296457787394 4.681630971495814E-4 62-63 1.5102035391921982E-5 0.0017895911939427547 0.0 0.2821588782449743 5.436732741091913E-4 64-65 1.5102035391921982E-5 0.002167142078740804 0.0 0.28869805956967654 5.436732741091913E-4 66-67 1.5102035391921982E-5 0.0021897951318286873 0.0 0.29477662881492517 5.512242918051523E-4 68-69 1.5102035391921982E-5 0.0022124481849165704 0.0 0.30114968775031625 5.587753095011133E-4 70-71 1.5102035391921982E-5 0.0022426522557004143 0.0 0.3063900940313131 5.587753095011133E-4 72-73 1.5102035391921982E-5 0.0022577542910923363 0.0 0.3103694803570846 5.738773448930353E-4 74-75 1.5102035391921982E-5 0.0023181624326600245 0.0 0.31305009163915076 5.738773448930353E-4 76-77 1.5102035391921982E-5 0.002461631768883283 0.0 0.3159345803990079 5.738773448930353E-4 78-79 1.5102035391921982E-5 0.002506937875059049 0.0 0.31781478380530215 5.738773448930353E-4 80-81 1.5102035391921982E-5 0.002506937875059049 0.0 0.31847172234485077 6.040814156768792E-4 82-83 1.5102035391921982E-5 0.002506937875059049 0.0 0.31907580376052763 6.644895572445672E-4 84-85 1.5102035391921982E-5 0.002522039910450971 0.0 0.3193023342914064 6.644895572445672E-4 86-87 1.5102035391921982E-5 0.002522039910450971 0.0 0.31937029345067014 6.720405749405282E-4 88 1.5102035391921982E-5 0.002642856193586347 0.0 0.3193778444683661 6.795915926364892E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10470 0.0 45.911007 1 GTATCAA 18220 0.0 35.6419 1 ATCAACG 22030 0.0 28.977503 3 TCAACGC 22250 0.0 28.709816 4 CAACGCA 22250 0.0 28.687082 5 TATCAAC 22780 0.0 28.321184 2 AACGCAG 22765 0.0 28.217678 6 ACGCAGA 26230 0.0 24.312407 7 CGCAGAG 26655 0.0 23.908861 8 GTGGTAT 5195 0.0 22.438696 1 TGGTATC 5395 0.0 21.13544 2 GCAGAGT 30560 0.0 20.812155 9 GAGTACT 16485 0.0 20.036272 12-13 GTACATG 22575 0.0 19.884684 1 TACATGG 22430 0.0 19.710857 2 ACATGGG 23030 0.0 18.718777 3 CAGAGTA 29870 0.0 18.51959 10-11 AGAGTAC 27250 0.0 17.952177 10-11 GTACTTT 18575 0.0 17.75911 14-15 GTACTAG 1635 0.0 17.370308 1 >>END_MODULE