##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138624_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7504132 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.7920307105472 33.0 33.0 33.0 33.0 33.0 2 32.809169801384094 33.0 33.0 33.0 33.0 33.0 3 32.80369708315366 33.0 33.0 33.0 33.0 33.0 4 36.748078125491396 37.0 37.0 37.0 37.0 37.0 5 36.758476130217325 37.0 37.0 37.0 37.0 37.0 6 36.76586899057746 37.0 37.0 37.0 37.0 37.0 7 36.74849283035 37.0 37.0 37.0 37.0 37.0 8 36.751841385519334 37.0 37.0 37.0 37.0 37.0 9 36.757326363662045 37.0 37.0 37.0 37.0 37.0 10-11 36.731906501644694 37.0 37.0 37.0 37.0 37.0 12-13 36.71140546301691 37.0 37.0 37.0 37.0 37.0 14-15 38.98029512274037 40.0 40.0 40.0 37.0 40.0 16-17 38.91149156224864 40.0 40.0 40.0 37.0 40.0 18-19 38.94956378699095 40.0 40.0 40.0 37.0 40.0 20-21 38.94730795271164 40.0 40.0 40.0 37.0 40.0 22-23 38.98267414428534 40.0 40.0 40.0 37.0 40.0 24-25 38.99162834900709 40.0 40.0 40.0 37.0 40.0 26-27 38.86465933327565 40.0 40.0 40.0 37.0 40.0 28-29 38.770325050628664 40.0 37.0 40.0 37.0 40.0 30-31 38.703603680247625 40.0 37.0 40.0 37.0 40.0 32-33 38.683961249309874 40.0 37.0 40.0 37.0 40.0 34-35 38.66183980451474 40.0 37.0 40.0 37.0 40.0 36-37 38.61050932139399 40.0 37.0 40.0 37.0 40.0 38-39 38.50328363752519 40.0 37.0 40.0 37.0 40.0 40-41 38.503588376005524 40.0 37.0 40.0 37.0 40.0 42-43 38.47402107484993 40.0 37.0 40.0 37.0 40.0 44-45 38.38672604719363 40.0 37.0 40.0 37.0 40.0 46-47 38.30552834503679 40.0 37.0 40.0 37.0 40.0 48-49 38.2501668072371 40.0 37.0 40.0 37.0 40.0 50-51 38.06579442934289 40.0 37.0 40.0 37.0 40.0 52-53 38.0215216901454 40.0 37.0 40.0 37.0 40.0 54-55 37.965820683915155 40.0 37.0 40.0 35.0 40.0 56-57 37.82139350807864 40.0 37.0 40.0 33.0 40.0 58-59 37.73009373072058 40.0 37.0 40.0 33.0 40.0 60-61 37.50234485684777 40.0 37.0 40.0 33.0 40.0 62-63 37.34486037361042 37.0 37.0 40.0 33.0 40.0 64-65 37.18107534909497 37.0 37.0 40.0 33.0 40.0 66-67 36.992894109328915 37.0 37.0 40.0 33.0 40.0 68-69 36.79386731432433 37.0 37.0 40.0 33.0 40.0 70-71 36.55560303444999 37.0 37.0 40.0 33.0 40.0 72-73 36.329852386139066 37.0 37.0 37.0 33.0 40.0 74-75 36.10910476892096 37.0 37.0 37.0 33.0 40.0 76-77 34.508924414080994 35.0 33.0 37.0 30.0 37.0 78-79 35.745064260058555 37.0 37.0 37.0 33.0 37.0 80-81 35.86080181823792 37.0 37.0 37.0 33.0 37.0 82-83 35.80042212725178 37.0 37.0 37.0 33.0 37.0 84-85 35.681980364493214 37.0 37.0 37.0 33.0 37.0 86-87 35.578586788292725 37.0 37.0 37.0 33.0 37.0 88-89 35.513380709234 37.0 37.0 37.0 33.0 37.0 90-91 35.45713316776282 37.0 33.0 37.0 33.0 37.0 92-93 35.39471511114107 37.0 33.0 37.0 33.0 37.0 94-95 35.3613213246546 37.0 33.0 37.0 33.0 37.0 96-97 35.335172126786915 37.0 33.0 37.0 33.0 37.0 98-99 35.29465376638066 37.0 33.0 37.0 33.0 37.0 100 35.23761521785348 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 6.0 20 36.0 21 196.0 22 751.0 23 2219.0 24 4870.0 25 9637.0 26 16775.0 27 25496.0 28 37010.0 29 49822.0 30 64892.0 31 85193.0 32 113234.0 33 154585.0 34 223392.0 35 346768.0 36 688468.0 37 2173035.0 38 3343520.0 39 164226.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.465941164147964 21.17212223878791 15.159234938831034 25.20270165823309 2 13.597735221075535 19.958883985516245 42.936531500245465 23.506849293162755 3 16.738683861063343 26.590915905461028 32.505671978726 24.164728254749637 4 11.557479735691038 19.30195086454832 36.214006029314945 32.92656337044569 5 12.768198585174991 37.46078149649013 35.64733388814576 14.123686030189116 6 28.951622919213044 37.4190645900152 18.282034484468024 15.347278006303727 7 24.92096354381826 33.45879310225353 21.10931684037541 20.5109265135528 8 24.550234457496217 35.76788094878928 21.70768051521482 17.974204078499685 9 23.791838949528074 16.54900260283268 19.735073956588185 39.92408449105106 10-11 23.405305237168005 26.163818813421724 28.33946018007146 22.091415769338813 12-13 24.810930831174076 23.569434812713848 27.774837915964163 23.84479644014791 14-15 22.438990945255227 25.622883499384074 24.549408246016995 27.388717309343708 16-17 22.322281910819267 29.601851353361052 25.1587858529141 22.917080882905577 18-19 23.09175798080311 26.955715864273177 26.925785687138763 23.026740467784947 20-21 23.120723935831386 26.55648069424492 26.867615585329386 23.45517978459431 22-23 22.062064369960684 27.517491837142664 27.52097021390018 22.899473578996467 24-25 22.860822826971866 27.203529990825782 27.322151652175535 22.613495530026817 26-27 22.972700063520488 27.7480346932302 27.75240322729956 21.526862015949753 28-29 21.657913073157626 26.340914231964973 28.405522215103378 23.59565047977402 30-31 21.820642442658915 26.501655624268366 29.074057928261897 22.603644004810818 32-33 20.814170831408287 25.83401317149444 30.470691464929228 22.881124532168045 34-35 20.775299080307217 26.606108035669152 29.411723582359883 23.206869301663748 36-37 21.55540090813254 26.793645531083527 29.198505279065866 22.45244828171807 38-39 22.045922330493315 25.912311298359793 28.896310514781202 23.145455856365693 40-41 21.589476123404623 25.80929633863944 29.83735015851569 22.763877379440245 42-43 22.496929997871227 25.364453282592827 30.233667011743222 21.90494970779273 44-45 21.39203213058086 26.500207849090536 29.46304465497121 22.644715365357396 46-47 23.21111411262282 25.205944347739955 27.769139710853537 23.813801828783692 48-49 22.337703370252733 25.30377129371789 28.81845467194639 23.54007066408298 50-51 21.755216504354948 26.44608481561371 28.95246556740414 22.846233112627207 52-53 21.612771729953792 27.39729021883644 29.702803981437658 21.28713406977211 54-55 21.472670816066483 27.69120905252094 28.124997936452417 22.711122194960158 56-57 22.81579494410758 28.598977798416264 26.549474658055765 22.03575259942039 58-59 21.054519085356535 29.787641015839718 28.493380949617308 20.66445894918644 60-61 22.426144717124483 30.80319092991707 25.897256526826467 20.873407826131977 62-63 21.283127135110583 31.521849178285986 25.933628900646944 21.261394785956483 64-65 21.590957443501583 30.517312110835487 26.403410417164736 21.488320028498194 66-67 21.999433941390908 29.335979135655993 26.70887430186657 21.95571262108653 68-69 22.256100820354945 28.15864143804694 27.254058545000564 22.331199196597552 70-71 22.371278971212718 27.583881529413283 27.439063111745952 22.605776387628048 72-73 22.50117867392074 27.56442786893929 27.410619728092257 22.523773729047715 74-75 22.3605227229907 27.704524140277663 27.383217944427727 22.551735192303905 76-77 22.46937449111407 27.634411819997638 27.289552663460885 22.606661025427403 78-79 22.408120908754682 27.64823638824953 27.284741697218223 22.658901005777565 80-81 22.445367706274418 27.595180355344834 27.374172537177376 22.58527940120337 82-83 22.53434528147739 27.507146772032115 27.486841563906943 22.47166638258355 84-85 22.694907637813998 27.455106534449193 27.339535932005838 22.51044989573098 86-87 22.443390900295366 27.473145399366572 27.468578482189777 22.614885218148288 88-89 22.578975629084137 27.364110438227296 27.395812226145377 22.661101706543185 90-91 22.62624777792313 27.384695234221883 27.45230879253687 22.536748195318125 92-93 22.675604250624946 27.302426727453486 27.464431177108008 22.557537844813563 94-95 22.48797275358961 27.399297649407934 27.489881368796443 22.622848228206017 96-97 22.565428040101505 27.52311542246137 27.540618317248494 22.370838220188634 98-99 23.730367396259673 29.400433418991216 27.71026766704818 19.158931517700932 100 22.630494796273485 30.401196249499673 21.470747017443244 25.497561936783598 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1094.0 1 1008.5 2 1521.0 3 2326.5 4 3451.0 5 5890.0 6 7835.0 7 9089.0 8 9923.5 9 9919.5 10 9365.0 11 8843.5 12 10133.0 13 13997.5 14 22352.5 15 33433.0 16 42343.5 17 47832.0 18 49048.5 19 46206.0 20 41427.0 21 36316.5 22 33113.0 23 33967.0 24 38810.0 25 47160.5 26 58537.5 27 71076.0 28 84171.5 29 99541.0 30 113938.0 31 127434.5 32 143151.5 33 158726.0 34 174826.0 35 190309.5 36 206178.0 37 222725.0 38 234058.0 39 240859.5 40 250331.5 41 259752.5 42 266673.0 43 275354.0 44 284258.0 45 294174.0 46 322995.5 47 370572.0 48 445250.0 49 462988.5 50 419782.5 51 406562.0 52 386192.5 53 336818.5 54 282940.5 55 246126.5 56 221902.0 57 200155.0 58 176691.5 59 152206.0 60 126081.5 61 101031.0 62 79502.0 63 61713.0 64 46801.5 65 34804.5 66 25737.5 67 19488.5 68 14846.0 69 10744.0 70 7526.5 71 5310.0 72 3674.5 73 2429.0 74 1559.0 75 979.0 76 651.5 77 427.5 78 276.5 79 186.0 80 125.0 81 75.5 82 53.0 83 40.0 84 29.5 85 21.0 86 12.0 87 8.5 88 7.0 89 5.5 90 4.5 91 3.5 92 2.5 93 2.0 94 1.5 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0018256608492494537 4 0.010554185347485891 5 0.017270485114067823 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.003712204328256966 26-27 0.042366827660611776 28-29 0.08907450766038764 30-31 0.08605685256915312 32-33 0.03544064626162471 34-35 0.0028299300119993065 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.0271870738778623E-4 56-57 2.0877038419119074E-4 58-59 3.038560548788344E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 3.441910108666265E-5 72-73 0.01187882175654033 74-75 0.024801641775558582 76-77 0.004910460897813398 78-79 0.0 80-81 0.0 82-83 0.005638487026796405 84-85 0.0441834379710683 86-87 0.04143276784321262 88-89 0.010601003701128897 90-91 1.6375959667359947E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 86.0 20-21 358.0 22-23 928.0 24-25 2100.0 26-27 3681.0 28-29 7919.0 30-31 18912.0 32-33 24415.0 34-35 32956.0 36-37 47816.0 38-39 55837.0 40-41 57093.0 42-43 66719.0 44-45 78481.0 46-47 75712.0 48-49 68311.0 50-51 62539.0 52-53 64651.0 54-55 98659.0 56-57 123996.0 58-59 119812.0 60-61 128199.0 62-63 136397.0 64-65 146470.0 66-67 162561.0 68-69 92417.0 70-71 62925.0 72-73 58397.0 74-75 60059.0 76-77 60365.0 78-79 62401.0 80-81 63014.0 82-83 60579.0 84-85 60780.0 86-87 63265.0 88-89 66917.0 90-91 70184.0 92-93 70571.0 94-95 78858.0 96-97 216612.0 98-99 402523.0 100-101 4369657.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.04851995816755 #Duplication Level Percentage of deduplicated Percentage of total 1 89.39679257809242 76.03064897774057 2 7.416648756843462 12.615499996382393 3 1.8436237366485375 4.703924104851137 4 0.650352997306273 2.2124623948502657 5 0.291950193674628 1.2414965936763738 6 0.14504619449075248 0.740157850020181 7 0.08020015106039419 0.477463290367559 8 0.05208072330886741 0.3543510748616009 9 0.029867580681441293 0.22861741785189654 >10 0.09107005034940424 1.15607237477456 >50 0.0017548036383032066 0.09730554326493707 >100 5.631618637340271E-4 0.10080789885787826 >500 2.4536033368648458E-5 0.013543029070473984 >1k 2.4536008425573963E-5 0.027649453430159576 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.3325991600360974E-5 0.0 0.0 0.0 3 0.0 1.3325991600360974E-5 0.0 0.0 0.0 4 0.0 3.9977974801082926E-5 0.0 0.0 0.0 5 0.0 3.9977974801082926E-5 0.0 1.3325991600360974E-5 0.0 6 1.3325991600360973E-4 3.9977974801082926E-5 0.0 1.3325991600360974E-5 0.0 7 1.3325991600360973E-4 5.3303966401443896E-5 0.0 1.3325991600360974E-5 0.0 8 1.4658590760397073E-4 5.3303966401443896E-5 0.0 1.3325991600360974E-5 0.0 9 1.4658590760397073E-4 1.1993392440324876E-4 0.0 1.3325991600360974E-5 1.3325991600360974E-5 10-11 1.4658590760397073E-4 1.2659692020342925E-4 0.0 5.996696220162438E-5 1.3325991600360974E-5 12-13 1.4658590760397073E-4 1.3325991600360973E-4 0.0 8.661894540234634E-5 1.3325991600360974E-5 14-15 1.4658590760397073E-4 1.8656388240505364E-4 0.0 1.1993392440324876E-4 1.3325991600360974E-5 16-17 1.8656388240505364E-4 1.9322687820523413E-4 0.0 1.665748950045122E-4 2.6651983200721948E-5 18-19 1.8656388240505364E-4 2.1321586560577559E-4 0.0 1.9988987400541461E-4 2.6651983200721948E-5 20-21 1.8656388240505364E-4 2.2654185720613656E-4 0.0 2.2654185720613656E-4 2.6651983200721948E-5 22-23 1.8656388240505364E-4 2.2654185720613656E-4 0.0 2.531938404068585E-4 2.6651983200721948E-5 24-25 1.9322687820523413E-4 2.531938404068585E-4 0.0 2.7984582360758044E-4 2.6651983200721948E-5 26-27 1.9988987400541461E-4 2.6651983200721947E-4 0.0 3.3981278580920486E-4 2.6651983200721948E-5 28-29 1.9988987400541461E-4 2.7318282780739995E-4 0.0 5.863436304158829E-4 3.331497900090244E-5 30-31 2.065528698055951E-4 2.9317181520794146E-4 0.0 0.001532489034041512 3.9977974801082926E-5 32-33 2.1321586560577559E-4 2.9317181520794146E-4 0.0 0.0032582049462882585 3.9977974801082926E-5 34-35 2.1321586560577559E-4 3.664647690099268E-4 0.0 0.005223788707341502 6.662995800180487E-5 36-37 2.1987886140595607E-4 4.3975772281191214E-4 0.0 0.008535297620031204 6.662995800180487E-5 38-39 2.3320485300631704E-4 4.530837144122731E-4 0.0 0.01379906430217379 6.662995800180487E-5 40-41 2.3986784880649753E-4 4.664097060126341E-4 0.0 0.018762996173308254 6.662995800180487E-5 42-43 2.46530844606678E-4 4.7307270181281457E-4 0.0 0.02283408660721853 6.662995800180487E-5 44-45 2.531938404068585E-4 5.730176388155218E-4 0.0 0.0278646484363548 7.329295380198537E-5 46-47 2.531938404068585E-4 6.596365842178682E-4 0.0 0.03339493495050461 7.995594960216585E-5 48-49 2.59856836207039E-4 7.062775548191317E-4 0.0 0.03893188446045459 9.328194120252682E-5 50-51 2.865088194077609E-4 7.995594960216585E-4 0.0 0.04389581633158905 9.328194120252682E-5 52-53 2.9317181520794146E-4 8.06222491821839E-4 0.0 0.04899300811872712 1.1993392440324878E-4 54-55 2.9317181520794146E-4 8.195484834221999E-4 0.0 0.054063547922664476 1.4658590760397073E-4 56-57 2.9317181520794146E-4 8.262114792223804E-4 0.0 0.05956051945781338 1.4658590760397073E-4 58-59 2.9317181520794146E-4 8.262114792223804E-4 0.0 0.06482428613995596 1.5324890340415122E-4 60-61 3.131608026084829E-4 8.728524498236437E-4 0.0 0.07026129071290324 1.599118992043317E-4 62-63 3.8645375641046826E-4 9.061674288245462E-4 0.0 0.07511861465123482 1.599118992043317E-4 64-65 3.8645375641046826E-4 9.994493700270731E-4 0.0 0.07978937470716133 1.599118992043317E-4 66-67 3.8645375641046826E-4 0.001012775361627434 0.0 0.08476663256989617 1.599118992043317E-4 68-69 3.8645375641046826E-4 0.0010261013532277949 0.0 0.0901769851596427 1.599118992043317E-4 70-71 3.9977974801082923E-4 0.0010460903406283365 0.0 0.09541409985858458 1.7323789080469267E-4 72-73 4.664097060126341E-4 0.0010594163322286973 0.0 0.09955848324629685 1.9988987400541461E-4 74-75 4.664097060126341E-4 0.001106057302829961 0.0 0.10262346131437985 1.9988987400541461E-4 76-77 4.7307270181281457E-4 0.0011460352776310437 0.0 0.10580837330686614 1.9988987400541461E-4 78-79 4.7973569761299505E-4 0.0011593612692314048 0.0 0.10785391301752155 1.9988987400541461E-4 80-81 4.7973569761299505E-4 0.0011593612692314048 0.0 0.10860016854714177 2.1321586560577559E-4 82-83 4.8639869341317554E-4 0.0011726872608317659 0.0 0.10917984918175747 2.531938404068585E-4 84-85 4.93061689213356E-4 0.0012060022398326683 0.0 0.10955297694656757 2.531938404068585E-4 86-87 4.93061689213356E-4 0.0012526432104339317 0.0 0.10965958487937047 2.531938404068585E-4 88 5.19713672414078E-4 0.0012792951936346536 0.0 0.10967291087097082 2.531938404068585E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 21465 0.0 67.34826 1 TTATACA 25360 0.0 57.261997 2 TATACAC 26245 0.0 55.829002 3 GGTATCA 11470 0.0 47.815266 1 TACACAT 40075 0.0 36.81357 5 ATACACA 42210 0.0 35.350975 4 GTATCAA 20595 0.0 35.215607 1 ACACATC 46870 0.0 30.958368 6 ACATCTC 49905 0.0 29.15743 8 ATCAACG 24440 0.0 29.040398 3 CACATCT 50200 0.0 28.864092 7 TCAACGC 24775 0.0 28.630857 4 TATCAAC 25150 0.0 28.512844 2 CAACGCA 25035 0.0 28.396488 5 AACGCAG 25375 0.0 28.10881 6 CATCTCC 56145 0.0 25.829588 9 ACGCAGA 28790 0.0 24.689524 7 CGCAGAG 29135 0.0 24.383152 8 GCAGAGT 32790 0.0 21.466015 9 GTGGTAT 5800 0.0 20.27769 1 >>END_MODULE