##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138622_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7882937 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.849114866705136 33.0 33.0 33.0 33.0 33.0 2 32.91157788017334 33.0 33.0 33.0 33.0 33.0 3 33.60810926181448 33.0 33.0 33.0 33.0 37.0 4 36.728640226352184 37.0 37.0 37.0 37.0 37.0 5 36.73375050441225 37.0 37.0 37.0 37.0 37.0 6 36.74680693249229 37.0 37.0 37.0 37.0 37.0 7 36.742763008254414 37.0 37.0 37.0 37.0 37.0 8 36.63678639065617 37.0 37.0 37.0 37.0 37.0 9 36.64599831255787 37.0 37.0 37.0 37.0 37.0 10-11 36.68481753691549 37.0 37.0 37.0 37.0 37.0 12-13 36.94626019464573 37.0 37.0 37.0 37.0 38.5 14-15 38.89730122161322 40.0 38.5 40.0 37.0 40.0 16-17 38.846360563328105 40.0 37.0 40.0 37.0 40.0 18-19 38.88872567419986 40.0 40.0 40.0 37.0 40.0 20-21 38.899198809113315 40.0 40.0 40.0 37.0 40.0 22-23 38.96249939906315 40.0 40.0 40.0 37.0 40.0 24-25 38.94513997726293 40.0 40.0 40.0 37.0 40.0 26-27 38.81019374675068 40.0 38.5 40.0 37.0 40.0 28-29 38.74412997935667 40.0 37.0 40.0 37.0 40.0 30-31 38.60626739539171 40.0 37.0 40.0 37.0 40.0 32-33 38.58083118331693 40.0 37.0 40.0 37.0 40.0 34-35 38.589026359924205 40.0 37.0 40.0 37.0 40.0 36-37 38.56870084324367 40.0 37.0 40.0 37.0 40.0 38-39 38.490720623073074 40.0 37.0 40.0 37.0 40.0 40-41 38.49101534148592 40.0 37.0 40.0 37.0 40.0 42-43 38.40691943997736 40.0 37.0 40.0 37.0 40.0 44-45 38.365276770646545 40.0 37.0 40.0 37.0 40.0 46-47 38.30637492576352 40.0 37.0 40.0 37.0 40.0 48-49 38.25597489782403 40.0 37.0 40.0 37.0 40.0 50-51 38.15676086249744 40.0 37.0 40.0 37.0 40.0 52-53 38.1094108405286 40.0 37.0 40.0 37.0 40.0 54-55 38.03849153283127 40.0 37.0 40.0 37.0 40.0 56-57 37.90098204690364 40.0 37.0 40.0 33.0 40.0 58-59 37.68840849029449 40.0 37.0 40.0 33.0 40.0 60-61 37.56933938217952 40.0 37.0 40.0 33.0 40.0 62-63 37.258066003912205 37.0 37.0 40.0 33.0 40.0 64-65 37.09936666475653 37.0 37.0 40.0 33.0 40.0 66-67 36.96692342357129 37.0 37.0 40.0 33.0 40.0 68-69 36.760571711290766 37.0 37.0 40.0 33.0 40.0 70-71 36.508027879590955 37.0 37.0 40.0 33.0 40.0 72-73 36.276759616315466 37.0 37.0 37.0 33.0 40.0 74-75 35.81505205855692 37.0 35.0 37.0 33.0 40.0 76-77 34.479952215022266 35.0 33.0 37.0 30.0 37.0 78-79 35.66845906074055 37.0 35.0 37.0 33.0 37.0 80-81 35.77777003014441 37.0 37.0 37.0 33.0 37.0 82-83 35.677592386683116 37.0 37.0 37.0 33.0 37.0 84-85 35.29810394249698 37.0 35.0 37.0 33.0 37.0 86-87 35.40092323950292 37.0 33.0 37.0 33.0 37.0 88-89 35.40648668353671 37.0 33.0 37.0 33.0 37.0 90-91 35.35249136024675 37.0 33.0 37.0 33.0 37.0 92-93 35.28247571705895 37.0 33.0 37.0 33.0 37.0 94-95 35.24640333632509 37.0 33.0 37.0 33.0 37.0 96-97 35.20326954697441 37.0 33.0 37.0 33.0 37.0 98-99 35.15433605397145 37.0 33.0 37.0 33.0 37.0 100 35.06320815166185 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 5.0 17 6.0 18 8.0 19 12.0 20 56.0 21 175.0 22 663.0 23 1924.0 24 4413.0 25 8621.0 26 15246.0 27 24567.0 28 36988.0 29 52253.0 30 71761.0 31 97442.0 32 134338.0 33 185384.0 34 268123.0 35 414081.0 36 789487.0 37 2233348.0 38 3368637.0 39 175399.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.004637252199416 0.0 25.226639279118185 29.768723468682406 2 14.390000459225238 24.01767027678596 38.05758126320431 23.53474800078449 3 16.003641539276014 24.97702153702035 33.24301375434656 25.776323169357074 4 13.92457409223572 24.349941941711283 35.9586431604722 25.766840805580806 5 16.804847630512032 36.32339559437097 32.374534412292924 14.497222362824076 6 27.159217433806717 38.683970200446865 19.383245102681908 14.773567263064516 7 25.141479628722134 33.61559276701057 22.37820751326568 18.864720091001615 8 23.734973398874047 31.70285389823615 22.579807500681532 21.98236520220826 9 22.860920999368638 20.331013681829504 23.3007443799183 33.507320938883566 10-11 24.030427999107438 25.782465342549354 28.349731832183867 21.837374826159337 12-13 25.27342283719888 23.720866981430905 28.380798933189492 22.624911248180723 14-15 22.141100455325216 26.585294288156813 26.252340973928877 25.02126428258909 16-17 22.05381065458217 28.85609767019577 26.430415465707767 22.659676209514295 18-19 22.02976504823012 27.715881783655 28.286557408742453 21.96779575937243 20-21 22.358146138151483 26.763600810236472 28.862904634578506 22.01534841703354 22-23 21.903275618407285 27.099693335402208 29.36641807604536 21.630612970145148 24-25 22.175466427233225 27.378892313647228 28.88828113969894 21.5573601194206 26-27 22.77058046863411 27.68734467427064 28.001539540875942 21.54053531621931 28-29 21.05915544460337 27.593418197812998 29.68381190735036 21.663614450233275 30-31 23.128557582412657 27.606151943657263 28.331515494455573 20.933774979474506 32-33 21.108451950910265 29.01433618015518 28.39344513289156 21.483766736043 34-35 21.580290077165447 28.509397820981203 28.821518234640592 21.088793867212758 36-37 21.352580889397007 28.716899527471323 28.66022906924586 21.270290513885808 38-39 21.540235817431306 27.568583657556623 29.275012643942727 21.616167881069345 40-41 21.811197355025477 26.968019564647435 29.062403812830556 22.15837926749653 42-43 22.314682866140426 26.73112053928241 29.08987579008087 21.86432080449629 44-45 21.78962529772371 27.501152820056053 28.87236235543415 21.836859526786085 46-47 22.20401264613886 26.71113383613119 28.219507043821164 22.865346473908787 48-49 22.148768884512688 26.882916278389104 28.733590810339706 22.234724026758506 50-51 21.814335832750324 27.475141239578253 28.16135269161087 22.549170236060554 52-53 21.934153168375012 27.550241404548736 28.59475343775874 21.92085198931751 54-55 21.8734026392329 27.877042538554477 28.21954973737974 22.030005084832887 56-57 22.514498053298343 28.569188858430373 26.949527960932578 21.966785127338706 58-59 21.76250154377365 28.614445518248772 28.153501336209864 21.469551601767716 60-61 22.312856726198515 29.10793929630596 27.092620567504877 21.48658340999064 62-63 21.898355705156693 29.424494957611575 26.98331912812141 21.693830209110327 64-65 21.96608655699846 28.91862400561349 27.17254249104953 21.94274694633852 66-67 22.091581176684464 28.551039613208467 27.299040970894417 22.058338239212652 68-69 22.20921010518215 28.121022614058283 27.564089262077196 22.10567801868237 70-71 22.268289367699186 27.65341182164263 27.640193706601984 22.4381051040562 72-73 22.285914841249067 27.79769796264465 27.658285542213832 22.258101653892446 74-75 22.16940837858682 27.974374468288104 27.61013095020394 22.246086202921138 76-77 22.45613221039199 27.767269815073682 27.380329174096076 22.396268800438254 78-79 22.19873427821359 27.85712594489647 27.54059819495826 22.40354158193168 80-81 22.24149079067766 27.91278931565709 27.54512601952409 22.300593874141157 82-83 22.430266749238886 27.61827120734378 27.654080476114206 22.297381567303123 84-85 22.512497618345222 27.63955157584344 27.576498416639065 22.271452389172268 86-87 22.294607767191888 27.781439221089304 27.634168252406788 22.289784759312024 88-89 22.43892083594092 27.54850113535961 27.571064578679678 22.44151345001979 90-91 22.444368196181603 27.5950499997358 27.638526524361534 22.322055279721063 92-93 22.390263423586227 27.657401495498352 27.672317346845578 22.280017734069848 94-95 22.401227505476314 27.547617534948476 27.6808126279875 22.37034233158771 96-97 22.36763198666538 27.868025575978756 27.820106793809344 21.944235643546513 98-99 23.53018016761338 29.891465547968405 27.291787294913515 19.2865669895047 100 22.68128437781074 30.19094797412941 21.669901391769137 25.45786625629071 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1141.0 1 1069.5 2 1721.5 3 2665.5 4 3907.5 5 6682.5 6 8819.5 7 10232.5 8 11232.5 9 11226.5 10 10640.5 11 9977.5 12 11128.0 13 14561.0 14 23065.0 15 36203.5 16 47940.0 17 54922.0 18 55875.0 19 52063.0 20 46260.0 21 40359.0 22 36781.0 23 37266.0 24 41783.5 25 50605.0 26 63562.0 27 77979.5 28 92958.5 29 110384.5 30 127541.0 31 143591.5 32 161501.5 33 178637.5 34 196644.5 35 216151.0 36 241993.0 37 276787.5 38 305656.5 39 323844.5 40 333834.0 41 333265.0 42 322588.5 43 312949.0 44 314287.5 45 329599.0 46 358884.5 47 381875.0 48 380398.5 49 370314.5 50 360536.5 51 337602.5 52 306229.0 53 279328.5 54 259540.5 55 240632.5 56 219997.5 57 197489.5 58 173388.0 59 150336.0 60 125354.5 61 100429.5 62 78604.5 63 60454.5 64 45813.5 65 34184.5 66 25715.5 67 19774.0 68 14999.0 69 10710.5 70 7490.0 71 5189.0 72 3481.0 73 2278.5 74 1553.0 75 1078.5 76 688.5 77 449.5 78 315.5 79 224.0 80 149.0 81 97.0 82 67.0 83 44.5 84 28.5 85 17.0 86 11.0 87 8.5 88 8.0 89 7.0 90 5.0 91 3.5 92 2.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 4.566825790945684E-4 2 0.0012051345837217778 3 0.007053208721571669 4 0.026183134534755254 5 0.0020043290971372726 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 5.7087462369054845E-5 22-23 2.7277608984356295E-4 24-25 0.006884294987916001 26-27 0.04346087718103369 28-29 0.08656780655763362 30-31 0.07782675436224874 32-33 0.031064563655442648 34-35 0.0015616016990226485 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.1095969361901777E-5 56-57 3.5550987332685495E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 1.5428369052450514E-5 70-71 9.357869980350813E-4 72-73 0.012377383591179745 74-75 0.020159245319255354 76-77 0.002665163257706115 78-79 1.621721993063895E-5 80-81 4.342783612858376E-4 82-83 0.008628593535941321 84-85 0.03971474337464191 86-87 0.03648923487217137 88-89 0.008213548144995819 90-91 1.7324772701147755E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 174.0 20-21 588.0 22-23 1132.0 24-25 2959.0 26-27 4457.0 28-29 9537.0 30-31 18464.0 32-33 24772.0 34-35 39817.0 36-37 84469.0 38-39 91490.0 40-41 72206.0 42-43 67697.0 44-45 78483.0 46-47 75350.0 48-49 65168.0 50-51 59299.0 52-53 59889.0 54-55 72252.0 56-57 86361.0 58-59 84689.0 60-61 91801.0 62-63 94978.0 64-65 88564.0 66-67 107139.0 68-69 73573.0 70-71 62536.0 72-73 60159.0 74-75 61339.0 76-77 61319.0 78-79 63960.0 80-81 64385.0 82-83 63293.0 84-85 63226.0 86-87 66116.0 88-89 70626.0 90-91 73083.0 92-93 77060.0 94-95 99294.0 96-97 345584.0 98-99 1314330.0 100-101 3881319.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.78574911391594 #Duplication Level Percentage of deduplicated Percentage of total 1 87.85503423107924 72.73144822248622 2 8.314186873710803 13.765923772264715 3 2.1674908489334674 5.3831206087954415 4 0.7972449132862753 2.6400206949465304 5 0.3578048483309641 1.4810571202834968 6 0.18507964442306685 0.919317420558047 7 0.10422336786129144 0.603974670850057 8 0.06461659426162764 0.4279466528911045 9 0.03966459162612672 0.2955296637959811 >10 0.11160795991644455 1.4164649506106466 >50 0.0021371537521022222 0.11883783321531523 >100 8.313270780707056E-4 0.15267872470608806 >500 5.1763827696308924E-5 0.033425396570395075 >1k 2.5881912839536035E-5 0.030254268026059628 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2685627197071346E-5 2 0.0 1.395418991677848E-4 0.0 0.0 1.2685627197071346E-5 3 0.0 1.395418991677848E-4 0.0 2.5371254394142692E-5 1.2685627197071346E-5 4 0.0 1.395418991677848E-4 0.0 3.8056881591214035E-5 1.2685627197071346E-5 5 0.0 1.395418991677848E-4 0.0 3.8056881591214035E-5 1.2685627197071346E-5 6 7.611376318242807E-5 1.395418991677848E-4 0.0 3.8056881591214035E-5 2.5371254394142692E-5 7 7.611376318242807E-5 1.395418991677848E-4 0.0 3.8056881591214035E-5 2.5371254394142692E-5 8 7.611376318242807E-5 1.5222752636485614E-4 0.0 3.8056881591214035E-5 2.5371254394142692E-5 9 7.611376318242807E-5 2.790837983355696E-4 0.0 3.8056881591214035E-5 5.0742508788285384E-5 10-11 8.245657678096374E-5 2.790837983355696E-4 0.0 5.7085322386821055E-5 5.0742508788285384E-5 12-13 8.879939037949941E-5 2.9176942553264096E-4 0.0 7.611376318242807E-5 5.0742508788285384E-5 14-15 8.879939037949941E-5 4.2496851110189005E-4 0.0 8.245657678096374E-5 7.611376318242807E-5 16-17 1.2685627197071345E-4 4.5668257909456844E-4 0.0 1.0148501757657077E-4 8.879939037949941E-5 18-19 1.2685627197071345E-4 4.5668257909456844E-4 0.0 1.7759878075899885E-4 8.879939037949941E-5 20-21 1.2685627197071345E-4 4.5668257909456844E-4 0.0 2.663981711384983E-4 8.879939037949941E-5 22-23 1.3319908556924914E-4 4.947394606857825E-4 0.0 3.361691207223906E-4 1.0782783117510643E-4 24-25 1.395418991677848E-4 5.708532238682105E-4 0.0 4.2496851110189005E-4 1.3319908556924914E-4 26-27 1.395418991677848E-4 6.215957326564959E-4 0.0 5.708532238682105E-4 1.395418991677848E-4 28-29 1.395418991677848E-4 6.279385462550316E-4 0.0 0.0010846211253496 1.395418991677848E-4 30-31 1.395418991677848E-4 6.97709495838924E-4 0.0 0.002283412895472842 1.395418991677848E-4 32-33 1.395418991677848E-4 6.97709495838924E-4 0.0 0.004522426095755935 1.4588471276632045E-4 34-35 1.395418991677848E-4 8.435942086052444E-4 0.0 0.007757261031009127 1.7759878075899882E-4 36-37 1.395418991677848E-4 0.0010021645485686363 0.0 0.012488999975516741 1.7759878075899882E-4 38-39 1.395418991677848E-4 0.001065592684553993 0.0 0.018825470760453877 1.7759878075899882E-4 40-41 1.395418991677848E-4 0.0011924489565247065 0.0 0.025409311275733905 1.7759878075899882E-4 42-43 1.7759878075899882E-4 0.0012875911605027416 0.0 0.03171406799267836 1.7759878075899882E-4 44-45 1.7759878075899882E-4 0.0013827333644807766 0.0 0.03902733207178999 1.7759878075899882E-4 46-47 1.7759878075899882E-4 0.0013827333644807766 0.0 0.04685436405238301 1.7759878075899882E-4 48-49 1.9662722155460585E-4 0.001395418991677848 0.0 0.054649681964983356 1.7759878075899882E-4 50-51 2.2199847594874856E-4 0.001490561195655883 0.0 0.06205808824807302 1.7759878075899882E-4 52-53 2.2834128954728422E-4 0.0015222752636485615 0.0 0.06968849300711144 1.839415943575345E-4 54-55 2.2834128954728422E-4 0.0015286180772470972 0.0 0.07641187542155925 1.902844079560702E-4 56-57 2.2834128954728422E-4 0.0015476465180427042 0.0 0.0816129825723585 1.9662722155460588E-4 58-59 2.2834128954728422E-4 0.0015476465180427042 0.0 0.08667454782398996 2.1565566235021288E-4 60-61 2.663981711384983E-4 0.0015603321452397755 0.0 0.09146971490448294 2.2834128954728422E-4 62-63 3.1714067992678365E-4 0.0015857033996339181 0.0 0.09618876822179348 2.2834128954728422E-4 64-65 3.2982630712385496E-4 0.0019282153339548445 0.0 0.10109810594706009 2.3468410314581988E-4 66-67 3.4251193432092633E-4 0.0019282153339548445 0.0 0.10657829689619491 2.4102691674435556E-4 68-69 3.4251193432092633E-4 0.0020233575379328796 0.0 0.11151300587585566 2.4102691674435556E-4 70-71 3.551975615179977E-4 0.002067757233122629 0.0 0.11621303075237059 2.4102691674435556E-4 72-73 4.439969518974971E-4 0.002086785673918236 0.0 0.11976500636755058 2.790837983355696E-4 74-75 4.439969518974971E-4 0.002112156928312379 0.0 0.12265732936848284 2.790837983355696E-4 76-77 4.439969518974971E-4 0.0021692422506992 0.0 0.12544182453824 2.790837983355696E-4 78-79 4.439969518974971E-4 0.0022199847594874854 0.0 0.12714804139624608 2.790837983355696E-4 80-81 4.439969518974971E-4 0.0022199847594874854 0.0 0.1276998661793187 2.8542661193410525E-4 82-83 4.503397654960328E-4 0.0022199847594874854 0.0 0.12813752031761766 2.9176942553264096E-4 84-85 4.8205383348871113E-4 0.0022390132002830924 0.0 0.1283214619119752 2.981122391311766E-4 86-87 4.8205383348871113E-4 0.0022960985226699133 0.0 0.12839123286155907 3.044550527297123E-4 88 4.8205383348871113E-4 0.0023341554042611277 0.0 0.12840391848875615 3.044550527297123E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 12875 0.0 54.211205 1 GGTATCA 13255 0.0 44.4333 1 TATACAC 16310 0.0 44.165638 3 TTATACA 16455 0.0 42.718834 2 GTATCAA 23130 0.0 34.942436 1 ATACACA 21345 0.0 34.85236 4 ACACATC 22335 0.0 31.368973 6 ATCAACG 26180 0.0 30.332943 3 TACACAT 24320 0.0 29.712133 5 CAACGCA 27535 0.0 28.770918 5 TCAACGC 27640 0.0 28.744051 4 AACGCAG 27775 0.0 28.596355 6 ACGCAGA 28085 0.0 28.32497 7 TATCAAC 28315 0.0 28.324083 2 ACATCTC 26285 0.0 26.781078 8 CACATCT 27370 0.0 25.507492 7 CGCAGAG 32270 0.0 24.62591 8 CTCGTAT 37100 0.0 23.25142 9 CATCTCC 30190 0.0 23.111155 9 TCTCGTA 36865 0.0 22.848927 8 >>END_MODULE