##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138621_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8623013 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.796182610417034 33.0 33.0 33.0 33.0 33.0 2 32.79631295928697 33.0 33.0 33.0 33.0 33.0 3 32.796255902664186 33.0 33.0 33.0 33.0 33.0 4 36.736304699992914 37.0 37.0 37.0 37.0 37.0 5 36.75770534034913 37.0 37.0 37.0 37.0 37.0 6 36.76889423685201 37.0 37.0 37.0 37.0 37.0 7 36.755683889146404 37.0 37.0 37.0 37.0 37.0 8 36.7515559816505 37.0 37.0 37.0 37.0 37.0 9 36.744598204827014 37.0 37.0 37.0 37.0 37.0 10-11 36.701164604529765 37.0 37.0 37.0 37.0 37.0 12-13 36.7026975373921 37.0 37.0 37.0 37.0 37.0 14-15 38.9637225410654 40.0 40.0 40.0 37.0 40.0 16-17 38.91233302095219 40.0 40.0 40.0 37.0 40.0 18-19 38.946083984797426 40.0 40.0 40.0 37.0 40.0 20-21 38.9929420802971 40.0 40.0 40.0 37.0 40.0 22-23 39.024618577385894 40.0 40.0 40.0 37.0 40.0 24-25 39.03256339439986 40.0 40.0 40.0 37.0 40.0 26-27 38.9401401019771 40.0 40.0 40.0 37.0 40.0 28-29 38.86789852915163 40.0 40.0 40.0 37.0 40.0 30-31 38.78973058814599 40.0 37.0 40.0 37.0 40.0 32-33 38.73380967379773 40.0 37.0 40.0 37.0 40.0 34-35 38.73392892681396 40.0 37.0 40.0 37.0 40.0 36-37 38.699256515224455 40.0 37.0 40.0 37.0 40.0 38-39 38.664687718477964 40.0 37.0 40.0 37.0 40.0 40-41 38.61791908067658 40.0 37.0 40.0 37.0 40.0 42-43 38.5020600458061 40.0 37.0 40.0 37.0 40.0 44-45 38.46697143917714 40.0 37.0 40.0 37.0 40.0 46-47 38.404275300254184 40.0 37.0 40.0 37.0 40.0 48-49 38.33723337099673 40.0 37.0 40.0 37.0 40.0 50-51 38.29649136020806 40.0 37.0 40.0 37.0 40.0 52-53 38.26395095505332 40.0 37.0 40.0 37.0 40.0 54-55 38.20244357000129 40.0 37.0 40.0 37.0 40.0 56-57 38.10928317285125 40.0 37.0 40.0 37.0 40.0 58-59 37.86048213417013 40.0 37.0 40.0 33.0 40.0 60-61 37.8026991689718 40.0 37.0 40.0 33.0 40.0 62-63 37.470862603012094 38.5 37.0 40.0 33.0 40.0 64-65 37.29408957351548 37.0 37.0 40.0 33.0 40.0 66-67 37.16140947957665 37.0 37.0 40.0 33.0 40.0 68-69 36.94554458729911 37.0 37.0 40.0 33.0 40.0 70-71 36.68237672819373 37.0 37.0 40.0 33.0 40.0 72-73 36.45211586390265 37.0 37.0 38.5 33.0 40.0 74-75 36.20122877396175 37.0 37.0 37.0 33.0 40.0 76-77 34.393376798938746 35.0 33.0 37.0 30.0 37.0 78-79 35.74296044067385 37.0 35.0 37.0 33.0 37.0 80-81 35.86928147836419 37.0 37.0 37.0 33.0 37.0 82-83 35.80362397147201 37.0 37.0 37.0 33.0 37.0 84-85 35.367902989548845 37.0 37.0 37.0 33.0 37.0 86-87 35.45746552240428 37.0 33.0 37.0 33.0 37.0 88-89 35.46016695115951 37.0 33.0 37.0 33.0 37.0 90-91 35.40406517290855 37.0 33.0 37.0 33.0 37.0 92-93 35.33027317691329 37.0 33.0 37.0 33.0 37.0 94-95 35.28666983108939 37.0 33.0 37.0 33.0 37.0 96-97 35.244909792283906 37.0 33.0 37.0 33.0 37.0 98-99 35.20534981095319 37.0 33.0 37.0 33.0 37.0 100 35.137524455530034 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 5.0 20 32.0 21 104.0 22 443.0 23 1279.0 24 3172.0 25 6847.0 26 12761.0 27 21653.0 28 33642.0 29 49558.0 30 70012.0 31 97541.0 32 134687.0 33 187591.0 34 270943.0 35 420250.0 36 813880.0 37 2380197.0 38 3926084.0 39 192329.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.123816002596776 20.978490928866744 14.893170171493422 23.004522897043064 2 14.41745478059699 21.272320939328285 42.159022606135466 22.151201673939262 3 17.72449017696379 26.81301660440219 31.003094784651186 24.459398433982837 4 12.183861669998763 18.62672991966078 39.78663831155618 29.402770098784277 5 12.981105660183925 38.00714710336348 35.77985279481338 13.23189444163922 6 28.747121220854012 38.60713186910422 19.27199924202828 13.373747668013488 7 25.61133793953459 33.456774331663425 23.6342911694555 17.297596559346484 8 24.0510480501421 36.541914061825025 21.624402050652133 17.782635837380738 9 25.45098795513819 17.073614524296783 22.01432376363111 35.461073756933914 10-11 23.710546418055962 27.272288700017032 29.101701458643287 19.915463423283715 12-13 24.650629658102105 25.015600695487763 29.290916063793482 21.042853582616655 14-15 21.876645668979045 26.31388239818263 27.345807086223807 24.46366484661452 16-17 20.90846900033666 29.420395168139024 28.092495047844647 21.578640783679674 18-19 20.83688729217966 28.45605126653526 30.193541399044626 20.513520042240454 20-21 21.84318356367571 27.48580588616122 30.13019763471543 20.540812915447642 22-23 21.605749046078195 27.49039119492479 29.901401018289786 21.002458740707237 24-25 21.314977066653242 27.664771605836552 30.01379173385683 21.00645959365338 26-27 21.259670370634982 27.85083573905842 29.84750679320739 21.041987097099206 28-29 21.040215591806156 27.9602043348891 29.947686940581885 21.051893132722864 30-31 21.41648491047451 27.71782124311463 29.883975409282993 20.98171843712787 32-33 21.28510196774293 27.88713568129707 29.65700752577983 21.170754825180172 34-35 21.311923388072586 28.00439844883148 29.739542799524088 20.94413536357185 36-37 21.376945230373874 27.90959547872901 29.594581735294216 21.118877555602896 38-39 21.2766115817602 27.97877394464902 29.636720577165715 21.107893896425065 40-41 21.512062908800793 27.891293432299634 29.49027047350043 21.106373185399143 42-43 21.450014199361433 27.976352590386355 29.218009528416268 21.35562368183594 44-45 21.56678041171966 28.195490065282115 28.91990534793151 21.31782417506671 46-47 21.613734910945663 28.176070739682203 28.568011253817595 21.642183095554536 48-49 21.714187645443246 28.25714393441423 28.481594044645718 21.547074375496805 50-51 21.68649056004829 28.353211383244197 28.335939616303072 21.624358440404436 52-53 21.728138152739014 28.376524445483597 28.22210969421758 21.673227707559814 54-55 21.794717681491377 28.349427554202023 28.141742211195737 21.714112553110866 56-57 21.861688241154173 28.406239952973422 28.078607839726722 21.653463966145686 58-59 21.753756386624804 28.467839625424237 28.21505617043073 21.56334781752023 60-61 21.83866127974798 28.495466980627544 28.10202647554246 21.563845264082016 62-63 21.859517578136213 28.474356181678058 27.94216290648044 21.72396333370529 64-65 21.792767743432478 28.473445283081965 28.018537148410505 21.71524982507505 66-67 21.887905827078725 28.409473773050877 27.91174573031274 21.79087466955766 68-69 21.804159349680212 28.33088632627329 28.017552876847702 21.847401447198795 70-71 21.76228495629316 28.16611801966825 28.067140203815384 22.004456820223204 72-73 21.907784990475683 28.20754593788411 28.029979095400986 21.854689976239218 74-75 21.84823885672381 28.295345880801857 27.975138650481746 21.881276611992586 76-77 21.902246628695156 28.248040710995507 27.89286638363934 21.956846276669992 78-79 21.836441114067352 28.22446546580072 27.933007279320393 22.006086140811536 80-81 21.807067360382064 28.22217505404861 28.003602056316428 21.967155529252892 82-83 21.946127659636893 28.141006691865382 28.115539020477563 21.797326628020162 84-85 22.10840959187763 28.057652201663956 27.89568721750941 21.938250988949004 86-87 21.849597243156573 28.13734713146846 28.041117747772827 21.97193787760214 88-89 22.019741762484724 27.988976109837594 28.00438249797824 21.98689962969944 90-91 22.038677218901775 27.98802790766604 28.0223047502466 21.95099012318558 92-93 22.04262049818313 27.937393381977937 28.121353157939705 21.898632961899224 94-95 21.875751614175023 27.987589822227772 28.1585982680432 21.978060295554013 96-97 21.948913940846676 28.135352298305637 28.17534291896637 21.740390841881318 98-99 23.044929938340985 30.034603443074047 28.40559689191301 18.514869726671954 100 22.038761157621206 30.936558765072338 22.211520784113578 24.81315929319288 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1419.0 1 1361.5 2 2209.0 3 3374.0 4 4933.5 5 8411.5 6 11160.0 7 12847.5 8 13840.0 9 13588.0 10 12641.0 11 11990.5 12 13821.0 13 18895.0 14 30115.5 15 45401.5 16 58060.5 17 65724.5 18 67296.5 19 63721.5 20 57737.0 21 51413.5 22 47735.0 23 49587.0 24 56943.0 25 69178.0 26 86096.0 27 104947.0 28 125194.5 29 147991.0 30 169279.5 31 190496.5 32 212887.0 33 232944.0 34 252903.5 35 271613.0 36 290248.5 37 308599.0 38 319696.5 39 326676.0 40 334839.0 41 339883.5 42 342622.5 43 346322.0 44 349848.0 45 355066.0 46 358917.5 47 358588.0 48 352094.0 49 339988.5 50 328429.0 51 315173.0 52 298130.0 53 279810.0 54 261927.0 55 240800.5 56 216973.0 57 192267.0 58 167082.5 59 143880.0 60 119464.5 61 95982.5 62 76079.0 63 58421.5 64 43014.5 65 31042.5 66 22831.0 67 17316.5 68 12988.5 69 9256.5 70 6380.5 71 4405.0 72 3049.0 73 2064.0 74 1414.0 75 928.5 76 607.0 77 395.0 78 252.5 79 172.5 80 125.5 81 89.0 82 64.5 83 45.0 84 25.5 85 15.0 86 13.0 87 10.5 88 7.5 89 4.5 90 2.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0013800280713945345 4 0.03264520185693794 5 0.002539715526347925 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 2.8992717609190925E-5 22-23 0.0 24-25 0.003404462827383759 26-27 0.040987068391376204 28-29 0.08810806917020356 30-31 0.0859161501846619 32-33 0.03946189678319713 34-35 0.002495337459035851 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 5.0854944724807055E-5 56-57 1.3473543734481366E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 2.749764929470592E-5 72-73 0.011022043461855082 74-75 0.024026788746705437 76-77 0.0030426781355064156 78-79 0.0 80-81 0.0 82-83 0.005332376097253738 84-85 0.04300541770338013 86-87 0.044415199621438674 88-89 0.011604748203942925 90-91 1.2324242817777904E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 86.0 20-21 404.0 22-23 1013.0 24-25 2163.0 26-27 3876.0 28-29 7959.0 30-31 18957.0 32-33 24855.0 34-35 34754.0 36-37 50306.0 38-39 59652.0 40-41 64527.0 42-43 77236.0 44-45 91802.0 46-47 89254.0 48-49 77288.0 50-51 68492.0 52-53 67226.0 54-55 71647.0 56-57 73974.0 58-59 71846.0 60-61 71123.0 62-63 70925.0 64-65 74703.0 66-67 79299.0 68-69 77197.0 70-71 75188.0 72-73 73309.0 74-75 75584.0 76-77 75540.0 78-79 78213.0 80-81 78442.0 82-83 77005.0 84-85 78150.0 86-87 80833.0 88-89 85970.0 90-91 89624.0 92-93 91576.0 94-95 101827.0 96-97 265882.0 98-99 498751.0 100-101 5466555.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.36859027126707 #Duplication Level Percentage of deduplicated Percentage of total 1 88.32093097652205 73.63191506958526 2 7.920804270253584 13.20692571651347 3 2.1243007985562548 5.312998886632855 4 0.7748080419884124 2.5837861676565854 5 0.35575764073443983 1.4829506493131073 6 0.18842069032383335 0.9425020398142174 7 0.10238604909911467 0.5975046403786546 8 0.060710187016707474 0.40490581653503066 9 0.0387849245679759 0.2910100036508624 >10 0.11097965281866862 1.355914636527134 >50 0.0016660983268825763 0.09065832442216935 >100 4.0549129842078506E-4 0.07034061329260757 >500 4.517849373142426E-5 0.028587435678102274 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1596874549533905E-5 0.0 0.0 0.0 3 0.0 1.1596874549533905E-5 0.0 1.1596874549533905E-5 0.0 4 0.0 3.479062364860171E-5 0.0 1.1596874549533905E-5 0.0 5 0.0 3.479062364860171E-5 0.0 1.1596874549533905E-5 0.0 6 0.0 3.479062364860171E-5 0.0 1.1596874549533905E-5 0.0 7 0.0 3.479062364860171E-5 0.0 2.319374909906781E-5 0.0 8 0.0 4.638749819813562E-5 0.0 3.479062364860171E-5 0.0 9 0.0 6.958124729720342E-5 0.0 4.638749819813562E-5 0.0 10-11 0.0 6.958124729720342E-5 0.0 5.218593547290257E-5 0.0 12-13 0.0 6.958124729720342E-5 0.0 6.378281002243648E-5 5.7984372747669525E-6 14-15 0.0 2.1454217916637723E-4 0.0 8.117812184673733E-5 2.319374909906781E-5 16-17 0.0 2.203406164411442E-4 0.0 8.117812184673733E-5 2.319374909906781E-5 18-19 0.0 2.6092967736451286E-4 0.0 9.277499639627124E-5 4.0589060923368666E-5 20-21 0.0 3.0151873828788154E-4 0.0 9.277499639627124E-5 8.117812184673733E-5 22-23 0.0 3.1891405011218236E-4 0.0 9.277499639627124E-5 8.117812184673733E-5 24-25 0.0 3.363093619364832E-4 0.0 9.277499639627124E-5 9.277499639627124E-5 26-27 0.0 3.479062364860171E-4 0.0 1.2756562004487295E-4 9.277499639627124E-5 28-29 0.0 3.479062364860171E-4 0.0 3.826968601346188E-4 9.277499639627124E-5 30-31 0.0 4.5227810743182225E-4 0.0 8.175796557421402E-4 9.277499639627124E-5 32-33 0.0 4.6387498198135617E-4 0.0 0.0021222280425647047 9.277499639627124E-5 34-35 0.0 5.334562292785596E-4 0.0 0.003873356099544324 9.277499639627124E-5 36-37 0.0 6.146343511252969E-4 0.0 0.006070963826680999 9.277499639627124E-5 38-39 0.0 6.262312256748308E-4 0.0 0.009538429316991635 1.2756562004487295E-4 40-41 0.0 7.190062220711021E-4 0.0 0.01320304167464435 1.5075936914394077E-4 42-43 0.0 7.537968457197038E-4 0.0 0.017018413401441005 1.5075936914394077E-4 44-45 0.0 8.987577775888776E-4 0.0 0.02127446636111995 1.5075936914394077E-4 46-47 0.0 0.0010089280858094497 0.0 0.026510455220234506 1.6235624369347466E-4 48-49 0.0 0.0010089280858094497 0.0 0.03156669252383129 1.681546809682416E-4 50-51 1.1596874549533905E-5 0.0011132999567552548 0.0 0.03640258921098692 1.8554999279254248E-4 52-53 1.1596874549533905E-5 0.0011248968313047887 0.0 0.041139912464471524 1.8554999279254248E-4 54-55 1.1596874549533905E-5 0.0011364937058543226 0.0 0.045593112291492544 1.8554999279254248E-4 56-57 1.1596874549533905E-5 0.0011480905804038565 0.0 0.05084069802515664 1.8554999279254248E-4 58-59 1.1596874549533905E-5 0.0011480905804038565 0.0 0.056360810310734775 1.9714686734207637E-4 60-61 1.1596874549533905E-5 0.0011538890176786235 0.0 0.061869325721763374 1.9714686734207637E-4 62-63 1.1596874549533905E-5 0.0011828812040524583 0.0 0.06694875677445923 1.9714686734207637E-4 64-65 1.1596874549533905E-5 0.0012988499495477973 0.0 0.07220214094539809 1.9714686734207637E-4 66-67 1.1596874549533905E-5 0.0013104468240973312 0.0 0.07742653292996311 1.9714686734207637E-4 68-69 1.1596874549533905E-5 0.0013510358850207 0.0 0.08303362177466275 2.029453046168433E-4 70-71 1.1596874549533905E-5 0.0013684311968450006 0.0 0.08782313096362025 2.0874374189161027E-4 72-73 1.1596874549533905E-5 0.0013742296341197676 0.0 0.09192842455415526 2.0874374189161027E-4 74-75 1.1596874549533905E-5 0.0013858265086693015 0.0 0.09519294473984904 2.0874374189161027E-4 76-77 1.1596874549533905E-5 0.0014670046305160387 0.0 0.0988343633484027 2.0874374189161027E-4 78-79 1.1596874549533905E-5 0.0015191905659889414 0.0 0.10110155232283657 2.0874374189161027E-4 80-81 1.1596874549533905E-5 0.0015191905659889414 0.0 0.10197711635132639 2.1454217916637723E-4 82-83 1.1596874549533905E-5 0.0015191905659889414 0.0 0.10246418508240682 2.203406164411442E-4 84-85 1.1596874549533905E-5 0.0015307874405384753 0.0 0.10263233976337505 2.203406164411442E-4 86-87 1.1596874549533905E-5 0.0015307874405384753 0.0 0.10271351788522179 2.2613905371591115E-4 88 1.1596874549533905E-5 0.0016351593114842804 0.0 0.10272511475977132 2.3193749099067809E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13825 0.0 50.778214 1 GTATCAA 25250 0.0 37.142044 1 ATCAACG 30805 0.0 30.047853 3 TATCAAC 31675 0.0 29.408676 2 CAACGCA 31515 0.0 29.320103 5 TCAACGC 31665 0.0 29.257692 4 AACGCAG 32360 0.0 28.722599 6 ACGCAGA 36700 0.0 25.199804 7 CGCAGAG 36985 0.0 24.994238 8 GTGGTAT 6620 0.0 22.646389 1 TGGTATC 6520 0.0 22.283247 2 GCAGAGT 42555 0.0 21.70297 9 GAGTACT 26220 0.0 20.365307 12-13 GTACATG 28695 0.0 19.92969 1 TACATGG 28170 0.0 19.688196 2 CAGAGTA 41620 0.0 19.353502 10-11 ACATGGG 28905 0.0 18.867039 3 AGAGTAC 39140 0.0 18.401886 10-11 GTACTTT 29860 0.0 17.826807 14-15 AGTACTT 28215 0.0 17.14246 12-13 >>END_MODULE