##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138620_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8341956 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.79743899392421 33.0 33.0 33.0 33.0 33.0 2 32.79457899322413 33.0 33.0 33.0 33.0 33.0 3 32.79445192470447 33.0 33.0 33.0 33.0 33.0 4 36.73389909992333 37.0 37.0 37.0 37.0 37.0 5 36.75389488987955 37.0 37.0 37.0 37.0 37.0 6 36.76563721985587 37.0 37.0 37.0 37.0 37.0 7 36.750862507546195 37.0 37.0 37.0 37.0 37.0 8 36.74705464761502 37.0 37.0 37.0 37.0 37.0 9 36.741712854874805 37.0 37.0 37.0 37.0 37.0 10-11 36.69702567359502 37.0 37.0 37.0 37.0 37.0 12-13 36.69790945912445 37.0 37.0 37.0 37.0 37.0 14-15 38.955989638401356 40.0 40.0 40.0 37.0 40.0 16-17 38.904291091921365 40.0 40.0 40.0 37.0 40.0 18-19 38.92984217370602 40.0 40.0 40.0 37.0 40.0 20-21 38.9729523264026 40.0 40.0 40.0 37.0 40.0 22-23 39.00659831690137 40.0 40.0 40.0 37.0 40.0 24-25 39.0154734226829 40.0 40.0 40.0 37.0 40.0 26-27 38.920560994332945 40.0 40.0 40.0 37.0 40.0 28-29 38.84871995077488 40.0 40.0 40.0 37.0 40.0 30-31 38.776532146550096 40.0 37.0 40.0 37.0 40.0 32-33 38.721711616004995 40.0 37.0 40.0 37.0 40.0 34-35 38.72136413744782 40.0 37.0 40.0 37.0 40.0 36-37 38.68524985193908 40.0 37.0 40.0 37.0 40.0 38-39 38.649859690894274 40.0 37.0 40.0 37.0 40.0 40-41 38.60251642442879 40.0 37.0 40.0 37.0 40.0 42-43 38.48028385144534 40.0 37.0 40.0 37.0 40.0 44-45 38.44245616707431 40.0 37.0 40.0 37.0 40.0 46-47 38.37588484440917 40.0 37.0 40.0 37.0 40.0 48-49 38.304268972803314 40.0 37.0 40.0 37.0 40.0 50-51 38.25998492095016 40.0 37.0 40.0 37.0 40.0 52-53 38.22090072285678 40.0 37.0 40.0 37.0 40.0 54-55 38.148009933455455 40.0 37.0 40.0 37.0 40.0 56-57 38.04803903469305 40.0 37.0 40.0 37.0 40.0 58-59 37.78601982195002 40.0 37.0 40.0 33.0 40.0 60-61 37.718528839164975 40.0 37.0 40.0 33.0 40.0 62-63 37.370620935388004 37.0 37.0 40.0 33.0 40.0 64-65 37.17931329922996 37.0 37.0 40.0 33.0 40.0 66-67 37.03693056578178 37.0 37.0 40.0 33.0 40.0 68-69 36.811136715425945 37.0 37.0 40.0 33.0 40.0 70-71 36.54450153312158 37.0 37.0 40.0 33.0 40.0 72-73 36.313796592094 37.0 37.0 37.0 33.0 40.0 74-75 36.06581893406212 37.0 37.0 37.0 33.0 40.0 76-77 34.25357705765041 35.0 33.0 37.0 30.0 37.0 78-79 35.63533026272121 37.0 35.0 37.0 33.0 37.0 80-81 35.77911112408924 37.0 37.0 37.0 33.0 37.0 82-83 35.723030332105104 37.0 37.0 37.0 33.0 37.0 84-85 35.28488934819431 37.0 33.0 37.0 33.0 37.0 86-87 35.38324505952012 37.0 33.0 37.0 33.0 37.0 88-89 35.39307194468511 37.0 33.0 37.0 33.0 37.0 90-91 35.33818531172075 37.0 33.0 37.0 33.0 37.0 92-93 35.26366095975111 37.0 33.0 37.0 33.0 37.0 94-95 35.21766199838252 37.0 33.0 37.0 33.0 37.0 96-97 35.175320784628035 37.0 33.0 37.0 33.0 37.0 98-99 35.13187911989952 37.0 33.0 37.0 33.0 37.0 100 35.06023017373985 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 3.0 20 20.0 21 118.0 22 420.0 23 1402.0 24 3339.0 25 7104.0 26 13144.0 27 21842.0 28 33737.0 29 49026.0 30 70516.0 31 97614.0 32 134223.0 33 188046.0 34 271896.0 35 422992.0 36 823249.0 37 2391981.0 38 3651657.0 39 159626.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.374301183079844 20.534500541599595 14.797980233892385 23.293218041428172 2 14.599058062641424 20.91298491624746 41.85128763565763 22.636669385453484 3 18.09053695863497 26.075141818010938 30.658655816639303 25.175665406714792 4 12.588468931233074 18.177116416185818 39.03460116866947 30.199813483911637 5 13.448593830880887 37.65217145291715 35.40718473431569 13.492049981886279 6 29.68036513259001 37.86549581417116 18.828461813991826 13.625677239247006 7 26.36271397259827 32.98993665274667 23.038098019217554 17.609251355437504 8 24.433574092215302 36.511472848813874 21.111499509227812 17.943453549743012 9 25.54158760846976 17.203926752910228 21.605544311190325 35.64894132742968 10-11 24.248078028702142 26.950190099300453 28.618767588800516 20.182964283196892 12-13 25.035681080072823 24.513878999122028 28.88791309855866 21.562526822246486 14-15 22.197875414351262 25.877701824368287 26.85118454233036 25.073238218950088 16-17 21.506796487538416 29.0110736618606 27.519576943345182 21.9625529072558 18-19 21.486669313527905 28.121270359133998 29.438041869316976 20.954018458021118 20-21 22.44344989293956 27.153677627811845 29.35961476343758 21.043257715811016 22-23 22.182985059220695 27.091962959963606 29.159848433670128 21.56520354714557 24-25 21.906901988900117 27.233668708825636 29.267295952129267 21.592133350144977 26-27 21.844597109617258 27.434433132150332 29.13186522298723 21.589104535245184 28-29 21.725554806408294 27.547936515715698 29.161770282621507 21.564738395254498 30-31 22.002123093221257 27.388113035349765 29.044401177539765 21.565362693889213 32-33 21.878184601250187 27.451753149823166 28.966284799249486 21.703777449677162 34-35 21.941416330943998 27.52084216343539 29.001247239009782 21.53649426661083 36-37 21.96429993899335 27.501078302227715 28.87909511985669 21.655526638922243 38-39 21.824509314344112 27.59513004003996 28.93778003956332 21.642580606052604 40-41 22.09909008572896 27.444691017831758 28.7609538543257 21.69526504211358 42-43 22.011015367201445 27.58681927302199 28.533779595146303 21.868385764630265 44-45 22.103406274464675 27.70712527721802 28.345035885328496 21.84443256298881 46-47 22.165649425812166 27.69159386128099 28.035498411947458 22.107258300959387 48-49 22.18877142436348 27.847817982658 27.92648137238658 22.036929220591936 50-51 22.121460664004672 27.910958075826375 27.82781028036196 22.13977097980699 52-53 22.245652638978026 27.881287766916557 27.664633357327297 22.208426236778127 54-55 22.26549703178061 27.758048505971217 27.719847239514333 22.256607222733837 56-57 22.310789248533666 27.859144677917826 27.696733463277294 22.133332610271218 58-59 22.253025204168544 28.015784341167567 27.670285023592108 22.060905431071784 60-61 22.329746657441824 27.939775725389417 27.664619080103325 22.065858537065434 62-63 22.36895376269277 27.965875281366593 27.52295353225614 22.1422174236845 64-65 22.289937509789457 27.95956651958025 27.52430678999836 22.22618918063193 66-67 22.3634313266284 27.942093798612085 27.46014120280636 22.234333671953156 68-69 22.273374448510335 27.86145643031872 27.58048868525394 22.284680435917 70-71 22.25480824719081 27.709080311704092 27.63209424233546 22.404017198769633 72-73 22.34065745924693 27.73724704508802 27.58136690699166 22.340728588673393 74-75 22.22930436638241 27.912276287775068 27.493508313752724 22.364911032089797 76-77 22.337625041533126 27.852601032051105 27.395939582273865 22.4138343441419 78-79 22.29865456436273 27.83647016525606 27.387208436245075 22.477666834136134 80-81 22.285987951197885 27.86087327640286 27.467907472250758 22.385231300148504 82-83 22.344655994078675 27.811631894771583 27.56416050746015 22.279551603689594 84-85 22.50265119672242 27.830952691538396 27.375183892802273 22.291212218936913 86-87 22.25096823292933 27.879136279328243 27.508989018227293 22.360906469515136 88-89 22.335043851493598 27.79373839957544 27.458203009241483 22.41301473968948 90-91 22.349392896732272 27.88543782774775 27.4426525034845 22.322516772035478 92-93 22.416171810486794 27.865284385070478 27.443100091734575 22.27544371270816 94-95 22.26878300377355 27.92821373782499 27.481233434619433 22.321769823782027 96-97 22.327440225267797 28.045519621589992 27.55231651301956 22.074723640122652 98-99 23.42563632862711 29.940065781308945 27.738829027782103 18.895468862281838 100 22.344867743700668 30.935877904310523 21.639130348092642 25.08012400389617 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1936.0 1 1751.0 2 2335.5 3 3345.5 4 4572.5 5 7405.0 6 9768.0 7 11211.5 8 12273.5 9 12227.5 10 11414.0 11 10666.5 12 11703.0 13 15521.0 14 24300.5 15 36383.5 16 46568.5 17 53012.0 18 54691.5 19 52081.0 20 47302.0 21 42113.0 22 39315.0 23 41234.5 24 47706.5 25 58656.5 26 73297.0 27 89786.5 28 107011.0 29 126339.0 30 145369.0 31 162671.0 32 182348.5 33 201423.5 34 218670.0 35 235930.5 36 255147.5 37 273021.5 38 284735.0 39 293597.0 40 303480.5 41 313294.0 42 319821.0 43 325497.0 44 332756.0 45 340675.5 46 345765.5 47 347017.5 48 345393.5 49 340817.5 50 333130.5 51 324748.5 52 314397.0 53 298403.0 54 281154.0 55 261913.5 56 241524.0 57 219913.5 58 195412.0 59 169231.5 60 140643.5 61 113635.0 62 90412.0 63 69934.0 64 51542.5 65 37775.0 66 28468.5 67 21364.5 68 15974.0 69 11548.0 70 8070.5 71 5586.0 72 3782.5 73 2460.0 74 1576.5 75 1042.0 76 715.0 77 463.0 78 289.0 79 184.0 80 126.5 81 81.5 82 55.5 83 41.5 84 30.0 85 22.5 86 16.5 87 12.0 88 8.0 89 4.5 90 2.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0012347224080299633 4 0.03271415001469679 5 0.0025653455856156516 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 3.596351932526684E-5 22-23 0.0 24-25 0.0032255250546255857 26-27 0.03975640937910612 28-29 0.08647149033163526 30-31 0.08440980672750005 32-33 0.0376488946013473 34-35 0.002230076712221473 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.966771526183236E-5 56-57 7.936041326670674E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 2.1138400081002348E-5 72-73 0.010149139001668955 74-75 0.022512271916084358 76-77 0.0035370766815030603 78-79 0.0 80-81 0.0 82-83 0.004586604962138845 84-85 0.040657289833957076 86-87 0.042274858550762955 88-89 0.010136575516369876 90-91 1.0138980464680393E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 92.0 20-21 366.0 22-23 1035.0 24-25 2625.0 26-27 3958.0 28-29 8067.0 30-31 19649.0 32-33 25253.0 34-35 34183.0 36-37 49746.0 38-39 58610.0 40-41 60934.0 42-43 71562.0 44-45 83708.0 46-47 81725.0 48-49 71592.0 50-51 64055.0 52-53 62034.0 54-55 65463.0 56-57 67226.0 58-59 65966.0 60-61 64262.0 62-63 63003.0 64-65 66165.0 66-67 69328.0 68-69 68362.0 70-71 66872.0 72-73 64587.0 74-75 66653.0 76-77 66537.0 78-79 68754.0 80-81 69309.0 82-83 67678.0 84-85 66923.0 86-87 70868.0 88-89 74626.0 90-91 77060.0 92-93 80222.0 94-95 96508.0 96-97 265976.0 98-99 493810.0 100-101 5416604.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.58398217967165 #Duplication Level Percentage of deduplicated Percentage of total 1 88.74381871762054 74.17561762249608 2 7.719340319214782 12.904264073601384 3 1.933434727336002 4.848125213856322 4 0.7421111126535141 2.481144080614705 5 0.3337236743313797 1.3946976824124295 6 0.17467697540570756 0.8760118319705763 7 0.10587109402967257 0.6194389345702946 8 0.0671576671572072 0.44906442039170613 9 0.04172276130687401 0.3138619083804406 >10 0.13540860668558302 1.6995281813672263 >50 0.002194228725653518 0.12265810069569043 >100 4.915789890677609E-4 0.07550599971616327 >500 2.4268274574312643E-5 0.015071301989561896 >1k 2.4268269434622364E-5 0.02501064793744448 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1987596194465662E-5 0.0 0.0 0.0 3 0.0 1.1987596194465662E-5 0.0 0.0 0.0 4 0.0 7.192557716679397E-5 0.0 0.0 0.0 5 1.1987596194465662E-5 7.192557716679397E-5 0.0 0.0 0.0 6 3.5962788583396986E-5 7.192557716679397E-5 0.0 0.0 0.0 7 5.993798097232831E-5 7.192557716679397E-5 0.0 0.0 0.0 8 5.993798097232831E-5 8.391317336125964E-5 0.0 0.0 1.1987596194465662E-5 9 5.993798097232831E-5 1.4385115433358794E-4 0.0 0.0 2.3975192388931324E-5 10-11 7.192557716679397E-5 1.4385115433358794E-4 0.0 0.0 2.3975192388931324E-5 12-13 7.192557716679397E-5 1.4385115433358794E-4 0.0 0.0 2.3975192388931324E-5 14-15 8.391317336125964E-5 2.097829334031491E-4 0.0 0.0 2.3975192388931324E-5 16-17 9.59007695557253E-5 2.1577673150038193E-4 0.0 1.1987596194465662E-5 3.5962788583396986E-5 18-19 1.0788836575019097E-4 2.2776432769484759E-4 0.0 1.1987596194465662E-5 3.5962788583396986E-5 20-21 1.0788836575019097E-4 2.3975192388931324E-4 0.0 1.1987596194465662E-5 3.5962788583396986E-5 22-23 1.3785735623635513E-4 2.757147124727102E-4 0.0 1.7981394291698493E-5 4.195658668062982E-5 24-25 2.0378913530591628E-4 3.1767129915334007E-4 0.0 4.795038477786265E-5 5.3944182875095476E-5 26-27 2.2177052959761477E-4 3.3565269344503856E-4 0.0 1.2586976004188945E-4 7.192557716679397E-5 28-29 2.3975192388931324E-4 3.3565269344503856E-4 0.0 4.854976458758593E-4 7.192557716679397E-5 30-31 2.3975192388931324E-4 4.195658668062982E-4 0.0 0.0016243192843500972 7.192557716679397E-5 32-33 2.3975192388931324E-4 4.3155346300076386E-4 0.0 0.0037221486183815883 9.59007695557253E-5 34-35 2.457457219865461E-4 4.61522453486928E-4 0.0 0.006611159301247813 1.0788836575019097E-4 36-37 2.517395200837789E-4 4.795038477786265E-4 0.0 0.010812811767408028 1.1388216384742379E-4 38-39 2.517395200837789E-4 5.274542325564892E-4 0.0 0.016686733902696205 1.1987596194465662E-4 40-41 2.7571471247271026E-4 5.754046173343518E-4 0.0 0.02381335984030604 1.1987596194465662E-4 42-43 3.056837029588744E-4 5.873922135288174E-4 0.0 0.029807157937538867 1.1987596194465662E-4 44-45 3.236650972505729E-4 7.012743773762413E-4 0.0 0.03681390791320405 1.1987596194465662E-4 46-47 3.656216839312027E-4 8.031689450291994E-4 0.0 0.04564876630852524 1.2586976004188945E-4 48-49 3.7161548202843556E-4 8.031689450291994E-4 0.0 0.0529252371985659 1.4385115433358794E-4 50-51 3.7161548202843556E-4 9.410263012655546E-4 0.0 0.059374563951188425 1.4385115433358794E-4 52-53 3.7161548202843556E-4 9.470200993627873E-4 0.0 0.06592578527146391 1.558387505280536E-4 54-55 3.7161548202843556E-4 9.530138974600201E-4 0.0 0.0720574407249331 1.6782634672251928E-4 56-57 3.8959687632013405E-4 9.829828879461843E-4 0.0 0.07827900314986078 1.6782634672251928E-4 58-59 4.0757827061183255E-4 9.829828879461843E-4 0.0 0.08480624927774733 1.6782634672251928E-4 60-61 4.0757827061183255E-4 0.0010069580803351158 0.0 0.09066818381684104 1.6782634672251928E-4 62-63 4.0757827061183255E-4 0.0010189456765295813 0.0 0.09636828580730947 1.6782634672251928E-4 64-65 4.0757827061183255E-4 0.001138821638474238 0.0 0.1019964622206111 1.6782634672251928E-4 66-67 4.0757827061183255E-4 0.001138821638474238 0.0 0.10808016728930242 1.6782634672251928E-4 68-69 4.0757827061183255E-4 0.0011568030327659363 0.0 0.11372033129879851 1.6782634672251928E-4 70-71 4.0757827061183255E-4 0.0011627968308631693 0.0 0.11867720232521006 1.6782634672251928E-4 72-73 4.0757827061183255E-4 0.0011627968308631693 0.0 0.12278295402181455 1.7981394291698494E-4 74-75 4.3155346300076386E-4 0.0012107472156410318 0.0 0.12571991508945862 1.7981394291698494E-4 76-77 4.435410591952295E-4 0.0012826727928078258 0.0 0.12847106841608852 1.7981394291698494E-4 78-79 4.435410591952295E-4 0.0013186355813912228 0.0 0.13061684813489785 1.7981394291698494E-4 80-81 4.5552865538969517E-4 0.0013186355813912228 0.0 0.13131212871417686 1.7981394291698494E-4 82-83 4.6751625158416085E-4 0.0013306231775856885 0.0 0.13180961395624718 1.7981394291698494E-4 84-85 4.6751625158416085E-4 0.001348604571877387 0.0 0.1320074092934559 1.7981394291698494E-4 86-87 4.6751625158416085E-4 0.0013785735623635513 0.0 0.13216924184208118 1.7981394291698494E-4 88 4.6751625158416085E-4 0.0013785735623635513 0.0 0.13218722323637286 1.7981394291698494E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11775 0.0 49.515514 1 GTATCAA 21375 0.0 37.208477 1 ATCAACG 26335 0.0 29.669579 3 TCAACGC 26390 0.0 29.574923 4 TATCAAC 27205 0.0 29.047844 2 CAACGCA 26860 0.0 29.045918 5 AACGCAG 27770 0.0 28.184608 6 ACGCAGA 31885 0.0 24.50732 7 CGCAGAG 31950 0.0 24.430948 8 GTGGTAT 6020 0.0 22.101255 1 TGGTATC 5755 0.0 21.499151 2 GCAGAGT 36710 0.0 21.124666 9 GTACATG 25645 0.0 20.141172 1 GAGTACT 21720 0.0 20.035854 12-13 TACATGG 25490 0.0 19.881315 2 ACATGGG 25845 0.0 19.083595 3 CAGAGTA 35940 0.0 18.79024 10-11 AGAGTAC 33715 0.0 18.48515 10-11 CATGGGG 19805 0.0 17.628922 4 GTACTTT 25015 0.0 17.29549 14-15 >>END_MODULE