##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138619_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 25376533 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.57903418091037 31.0 31.0 34.0 30.0 34.0 2 31.689429678987274 31.0 31.0 34.0 30.0 34.0 3 31.757057632734938 31.0 31.0 34.0 30.0 34.0 4 35.53373335120286 37.0 35.0 37.0 33.0 37.0 5 35.37115590218727 37.0 35.0 37.0 33.0 37.0 6 35.392873723136255 37.0 35.0 37.0 33.0 37.0 7 35.28940080191411 37.0 35.0 37.0 32.0 37.0 8 35.26820700841994 37.0 35.0 37.0 32.0 37.0 9 36.8523990649156 39.0 37.0 39.0 32.0 39.0 10-11 36.7184760030064 39.0 35.0 39.0 32.0 39.0 12-13 36.68307908728115 39.0 35.0 39.0 32.0 39.0 14-15 37.80837606933934 40.0 37.0 41.0 32.0 41.0 16-17 37.762825638947604 40.0 37.0 41.0 32.0 41.0 18-19 37.78713494865512 40.0 37.0 41.0 32.0 41.0 20-21 37.76487731558207 40.0 37.0 41.0 32.0 41.0 22-23 37.67293648714298 39.5 36.5 41.0 32.0 41.0 24-25 37.60588683987851 39.0 36.0 41.0 32.0 41.0 26-27 37.40786916525718 39.0 36.0 41.0 31.5 41.0 28-29 37.261413147447556 39.0 36.0 41.0 31.0 41.0 30-31 37.09997692352964 39.0 36.0 41.0 31.0 41.0 32-33 36.89430212191131 39.0 35.5 40.0 30.0 41.0 34-35 36.77436889788072 39.0 35.0 40.0 30.0 41.0 36-37 36.62481679242853 38.0 35.0 40.0 30.0 41.0 38-39 36.49148649991524 38.0 35.0 40.0 30.0 41.0 40-41 36.37443586624394 38.0 35.0 40.0 30.0 41.0 42-43 36.141106954197916 38.0 35.0 40.0 29.5 41.0 44-45 35.98565151490679 38.0 34.0 40.0 29.0 41.0 46-47 36.001787159784556 38.0 34.0 40.0 29.0 41.0 48-49 36.306477350550296 38.0 35.0 40.0 29.5 41.0 50-51 36.588712461295984 39.0 35.0 40.0 30.0 41.0 52-53 36.578092958469654 39.0 35.0 40.0 30.0 41.0 54-55 36.498787776590675 38.5 35.0 40.0 30.0 41.0 56-57 36.360715069675365 38.0 35.0 40.0 29.0 41.0 58-59 36.212083254803034 38.0 34.0 40.0 29.0 41.0 60-61 36.038254022328594 38.0 34.0 40.0 28.5 41.0 62-63 35.85281286762736 38.0 34.0 40.0 28.0 41.0 64-65 35.628086500921896 37.0 34.0 40.0 28.0 41.0 66-67 35.40503534001651 37.0 34.0 40.0 28.0 41.0 68-69 35.14492092592322 36.5 33.0 39.5 28.0 41.0 70-71 34.87629201154763 36.0 33.0 39.0 28.0 41.0 72-73 34.61033572430654 36.0 33.0 39.0 28.0 40.0 74-75 34.30079559130168 35.0 32.5 38.5 27.5 40.0 76-77 32.56499379979751 34.0 30.5 36.0 25.5 39.0 78-79 33.57205936985121 35.0 32.0 37.0 26.5 39.0 80-81 33.616768529016596 35.0 32.0 36.5 27.0 39.0 82-83 33.39993227279173 35.0 32.0 36.0 27.0 38.5 84-85 33.16152882878052 35.0 32.0 36.0 27.0 37.0 86-87 32.946210334515676 34.5 32.0 35.5 27.0 37.0 88-89 32.785298223461915 34.0 32.0 35.0 27.0 36.5 90-91 32.66575116373991 34.0 32.0 35.0 27.0 36.0 92-93 32.594834785029136 34.0 32.0 35.0 27.0 36.0 94-95 32.57103244633039 34.0 32.0 35.0 27.0 36.0 96-97 32.65181469110138 34.0 32.0 35.0 27.5 35.0 98-99 32.77672220552418 34.0 32.0 35.0 29.0 35.0 100 31.58444668548192 33.0 30.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 4.0 19 30.0 20 291.0 21 2081.0 22 9997.0 23 33010.0 24 81727.0 25 164189.0 26 279273.0 27 416238.0 28 564835.0 29 718676.0 30 872170.0 31 1037492.0 32 1234137.0 33 1481881.0 34 1824847.0 35 2302849.0 36 3074908.0 37 4181713.0 38 4579508.0 39 2423853.0 40 92822.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.93285185962952 22.58810137696903 14.954765491408933 23.524281271992514 2 14.04535439325785 22.465142450329587 42.54185073763902 20.94765241877355 3 17.268028694069436 28.407229624314716 31.645414288862867 22.67932739275298 4 12.064508575698659 19.467828800727034 40.27097003361334 28.19669258996097 5 11.95443837816616 39.07305225658682 36.98681376214788 11.985695603099131 6 27.76761506388599 40.512866749764434 19.34405696790811 12.375461218441464 7 24.446173079594388 33.44115366692971 25.167813890621137 16.94485936285477 8 22.73739679096431 38.85175331082461 22.070579933042865 16.340269965168215 9 24.632639927605556 17.11439068528392 22.292379341181082 35.96059004592944 10-11 23.12468861469928 27.666735930172297 30.354484395594213 18.85409105953421 12-13 23.89368756101235 25.108664908676907 30.251633177871394 20.746014352439346 14-15 21.18545924676466 26.70678206256454 27.367576003617867 24.74018268705294 16-17 20.89638539175905 29.725157556792393 28.13146557002409 21.246991481424466 18-19 20.908671193923105 28.97478799001455 29.58342549531128 20.533115320751072 20-21 21.566410793922756 28.158285708182902 29.39158784117565 20.883715656718696 22-23 21.38277769069095 28.291971732785274 29.204762773972213 21.120487802551562 24-25 21.33877961758617 28.44645026234326 29.25349423336116 20.961275886709412 26-27 21.3725332578735 28.510910689280816 29.18591259040706 20.930643462438628 28-29 21.38017222330241 28.48608731142395 29.126441926718776 21.00729853855486 30-31 21.486480835925423 28.489829093258333 29.121210918849965 20.902479151966276 32-33 21.46350040316643 28.62683916464733 28.92964417771285 20.980016254473387 34-35 21.64005032377045 28.41532734664074 29.10201404689246 20.84260828269635 36-37 21.350465450844013 28.610059366978675 28.947972617688233 21.091502564489073 38-39 21.265546613488176 28.408854990701442 29.15854806553409 21.167050330276293 40-41 21.383024914984695 28.271464207749382 29.17613518072478 21.169375696541145 42-43 21.584931901199056 28.308141074729697 28.84215645637723 21.26477056769402 44-45 21.365005190479362 28.610863697303518 28.69136790449692 21.332763207720195 46-47 21.658130099118363 28.324138772645185 28.373303263257064 21.644427864979388 48-49 21.511810776458656 28.416430892635614 28.416390485775107 21.655367845130627 50-51 21.355586195746096 28.560066323852958 28.399283440945478 21.68506403945547 52-53 21.455285759656697 28.519305620517898 28.498208516366404 21.527200103459 54-55 21.516069162515905 28.46932019412518 28.328216353546765 21.68639428981215 56-57 21.676425018825576 28.540308742984124 28.12944344818502 21.65382279000528 58-59 21.432344838405136 28.6316272331751 28.41697972283952 21.519048205580248 60-61 21.670213069664836 28.85799099916499 28.071495903336523 21.400300027833644 62-63 21.474331201568468 28.969942586028907 28.065502053649677 21.490224158752945 64-65 21.420520255380787 28.851842491713388 28.038862619211987 21.68877463369384 66-67 21.54503719706936 28.77665910248076 27.90933441051291 21.768969289936972 68-69 21.49940648978273 28.736494505591732 27.980563616173537 21.78353538845201 70-71 21.58846250096481 28.380333229588295 28.139234913698697 21.891969355748202 72-73 21.655585472384388 28.401142843175382 28.06211185431765 21.88115983012258 74-75 21.54697846996108 28.596595539136516 28.005990146678585 21.85043584422382 76-77 21.681297374281407 28.522181092253206 28.002562363125755 21.79395917033963 78-79 21.667525504522203 28.430099311658264 27.949811823048083 21.952563360771453 80-81 21.602096855720376 28.556475638857986 27.959955610269493 21.881471895152142 82-83 21.764703036284946 28.453808735471277 28.049857766961455 21.731630461282318 84-85 21.86573679596164 28.4765941994737 27.90404295465571 21.75362604990895 86-87 21.625399479321977 28.620725036872713 28.040137806476316 21.71373767732899 88-89 21.752413082026 28.519013828501727 27.98259670680208 21.745976382670197 90-91 21.826962008728355 28.482562181939507 28.06306152831606 21.627414281016083 92-93 21.833870557000065 28.511123460535497 28.042189397670818 21.612816584793617 94-95 21.553134942692726 28.54745965475058 28.16204785527815 21.73735754727855 96-97 21.57976386754914 28.64860805689362 28.290575479966133 21.481052595591102 98-99 22.556715496796965 30.664128967022812 28.539026307422617 18.240129228757606 100 21.919118791870883 31.284635945701844 22.255680140147398 24.540565122279876 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5137.0 1 4701.5 2 6614.0 3 9383.5 4 12366.0 5 20611.5 6 28112.5 7 32642.0 8 34680.5 9 32980.0 10 29549.5 11 25817.0 12 26685.5 13 34022.5 14 52932.5 15 80442.5 16 103833.0 17 118588.5 18 124972.5 19 125185.0 20 122099.0 21 118899.5 22 120359.0 23 133729.0 24 161920.0 25 206038.5 26 266782.5 27 339170.0 28 426674.0 29 532952.0 30 639211.5 31 740870.5 32 844207.5 33 935629.5 34 1014981.0 35 1074518.5 36 1120074.0 37 1153191.5 38 1144416.5 39 1108038.0 40 1074344.0 41 1036387.0 42 1000526.5 43 979990.0 44 962481.0 45 956116.0 46 961696.0 47 966648.5 48 947893.5 49 915700.5 50 893589.5 51 866789.0 52 824107.5 53 769187.0 54 714768.0 55 656695.5 56 600767.5 57 544605.5 58 483256.5 59 424245.0 60 361280.0 61 297109.5 62 240496.0 63 190604.0 64 146904.0 65 112821.0 66 86452.5 67 66270.5 68 50785.0 69 38016.5 70 28541.0 71 21693.5 72 16311.5 73 12206.0 74 9144.0 75 6710.5 76 4769.0 77 3366.0 78 2395.0 79 1666.0 80 1160.0 81 829.0 82 628.0 83 435.0 84 293.5 85 223.0 86 169.5 87 124.0 88 84.0 89 52.5 90 35.5 91 28.5 92 22.0 93 16.0 94 10.5 95 6.5 96 5.0 97 4.5 98 2.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.11149671233655126 3 0.0 4 0.0 5 0.0 6 0.0 7 2.2855762053862914E-4 8 0.0 9 0.0 10-11 5.5169080819669106E-5 12-13 4.137681061475182E-5 14-15 9.496963198243037E-4 16-17 1.9112145855385368E-4 18-19 6.305037807962182E-5 20-21 7.448301692632471E-4 22-23 4.0795096027418875E-4 24-25 3.114886476188073E-4 26-27 0.002000211107093374 28-29 0.0038695754080743665 30-31 0.01072930158021747 32-33 0.008095024272966997 34-35 0.0071259694038453055 36-37 0.0037312509399516076 38-39 5.653015905184226E-4 40-41 2.0768297934346404E-4 42-43 3.227153010547323E-4 44-45 3.323700487638794E-5 46-47 0.0 48-49 2.1266764164855874E-5 50-51 0.0 52-53 0.0013162438830497762 54-55 6.889488523055586E-4 56-57 6.834320537621381E-4 58-59 4.718364952632222E-5 60-61 4.940185621214113E-4 62-63 3.57584490467132E-4 64-65 9.051661410232007E-4 66-67 8.925773646178535E-4 68-69 3.109834884160579E-4 70-71 2.618499010293026E-4 72-73 2.48405281563288E-6 74-75 1.7645358937858292E-5 76-77 3.147039108254998E-4 78-79 1.1692514615838144E-4 80-81 3.2496423610062577E-4 82-83 5.64469833401567E-5 84-85 1.3667706669802585E-5 86-87 0.0 88-89 5.668603250490476E-6 90-91 0.0 92-93 0.0 94-95 1.1866862204156463E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 942.0 20-21 3396.0 22-23 7046.0 24-25 13603.0 26-27 19120.0 28-29 32077.0 30-31 83266.0 32-33 96716.0 34-35 128571.0 36-37 176924.0 38-39 203961.0 40-41 226192.0 42-43 247295.0 44-45 279397.0 46-47 280893.0 48-49 259136.0 50-51 240739.0 52-53 229442.0 54-55 246474.0 56-57 277240.0 58-59 288021.0 60-61 291778.0 62-63 293412.0 64-65 302789.0 66-67 329131.0 68-69 310627.0 70-71 306506.0 72-73 293633.0 74-75 296559.0 76-77 289870.0 78-79 316118.0 80-81 325404.0 82-83 311531.0 84-85 311862.0 86-87 327719.0 88-89 359726.0 90-91 392363.0 92-93 425676.0 94-95 510772.0 96-97 1046720.0 98-99 1602271.0 100-101 1.3391615E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.95978501076428 #Duplication Level Percentage of deduplicated Percentage of total 1 88.18968372565598 71.39817834596406 2 7.448073554361673 12.059888674109597 3 2.147857140611268 5.216701570131694 4 0.9190347503209616 2.976194232136259 5 0.4562311265599882 1.8468186960757713 6 0.26596229663973553 1.291935021415326 7 0.15857608701779138 0.8986800138966047 8 0.10171498550789909 0.6587858687274011 9 0.07470368221117714 0.5443194646196421 >10 0.23442134354134259 2.8305673038261157 >50 0.0029564833249266604 0.1581129422875169 >100 7.55368864869275E-4 0.09767063830429298 >500 1.9651449619850674E-5 0.012416168769280556 >1k 9.803932718987419E-6 0.009731059736419826 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.940648629976364E-6 0.0 2 0.0 7.881297259952728E-6 0.0 3.940648629976364E-6 0.0 3 0.0 7.881297259952728E-6 0.0 7.881297259952728E-6 0.0 4 0.0 3.940648629976364E-5 0.0 2.3643891779858187E-5 0.0 5 3.940648629976364E-6 4.3347134929740006E-5 0.0 3.152518903981091E-5 0.0 6 3.940648629976364E-6 4.3347134929740006E-5 0.0 6.699102670959819E-5 0.0 7 3.940648629976364E-6 4.7287783559716375E-5 0.0 7.093167533957456E-5 0.0 8 1.5762594519905456E-5 4.7287783559716375E-5 0.0 7.487232396955092E-5 0.0 9 1.5762594519905456E-5 1.3398205341919639E-4 0.0 1.0245686437938547E-4 0.0 10-11 2.955486472482273E-5 1.3595237773418456E-4 0.0 1.4974464793910184E-4 0.0 12-13 3.152518903981091E-5 1.3792270204917274E-4 0.0 1.970324314988182E-4 0.0 14-15 4.137681061475183E-5 1.990027558138064E-4 0.0 2.009730801287946E-4 0.0 16-17 4.7287783559716375E-5 2.0294340444378277E-4 0.0 2.502311880034991E-4 7.881297259952728E-6 18-19 6.896135102458637E-5 2.2264664759366458E-4 0.0 3.1919253902808556E-4 7.881297259952728E-6 20-21 9.85162157494091E-5 2.423498907435464E-4 0.0 4.039164845725773E-4 7.881297259952728E-6 22-23 1.2018978321427911E-4 2.7584540409834554E-4 0.0 4.8272945717210464E-4 7.881297259952728E-6 24-25 1.4777432362411366E-4 3.2707383628803827E-4 0.0 5.418391866217501E-4 7.881297259952728E-6 26-27 1.7141821540397184E-4 3.5859902532784917E-4 0.0 7.13257402025722E-4 7.881297259952728E-6 28-29 1.8521048560888912E-4 3.5859902532784917E-4 0.0 0.0016314285328102149 7.881297259952728E-6 30-31 1.8521048560888912E-4 4.1376810614751825E-4 0.0 0.005355341488137879 7.881297259952728E-6 32-33 2.1870599896368822E-4 4.236197277224592E-4 0.0 0.01502372290178489 1.1821945889929094E-5 34-35 2.522015123184873E-4 4.886404301170692E-4 0.0 0.026433871009881454 1.970324314988182E-5 36-37 2.522015123184873E-4 5.51690808196691E-4 0.0 0.04268510595990398 1.970324314988182E-5 38-39 2.522015123184873E-4 5.713940513465729E-4 0.0 0.08531504283898829 2.3643891779858187E-5 40-41 2.758454040983455E-4 6.265631321662419E-4 0.0 0.12765928269239932 2.3643891779858187E-5 42-43 2.876673499882746E-4 6.502070239461002E-4 0.0 0.1572712868223567 2.561421609484637E-5 44-45 2.9160799861825096E-4 7.349309694905919E-4 0.0 0.19729251430839667 2.758454040983455E-5 46-47 3.113112417681328E-4 7.920703746252492E-4 0.0 0.2328312539778385 2.758454040983455E-5 48-49 3.113112417681328E-4 7.920703746252492E-4 0.0 0.26675826835762 2.758454040983455E-5 50-51 3.1919253902808556E-4 8.886162660596701E-4 0.0 0.30076803635863103 2.758454040983455E-5 52-53 3.34955133547991E-4 8.905865903746583E-4 0.0 0.37928940095954006 3.3495513354799096E-5 54-55 3.428364308079437E-4 8.905865903746583E-4 0.0 0.47432208332005005 3.940648629976364E-5 56-57 3.428364308079437E-4 8.945272390046348E-4 0.0 0.5688286890884582 3.940648629976364E-5 58-59 3.6056934964283734E-4 8.945272390046348E-4 0.0 0.6219446919719096 3.940648629976364E-5 60-61 3.78302268477731E-4 9.024085362645875E-4 0.0 0.6579937456389333 3.940648629976364E-5 62-63 4.039164845725773E-4 9.162008064695047E-4 0.0 0.6862442556672339 4.3347134929740006E-5 64-65 4.177087547774946E-4 0.0010127466979039258 0.0 0.6942102768727312 4.3347134929740006E-5 66-67 4.2559005203744737E-4 0.0010186576708488904 0.0 0.7015182097570223 4.3347134929740006E-5 68-69 4.492339438173055E-4 0.0010521531842036893 0.0 0.7085246830211203 4.3347134929740006E-5 70-71 4.551449167622701E-4 0.001060034481463642 0.0 0.7149617325581867 5.51690808196691E-5 72-73 4.5908556539224645E-4 0.00106200480577863 0.0 0.7203485992353644 5.51690808196691E-5 74-75 4.610558897072346E-4 0.0010895893461884648 0.0 0.7246242029988887 5.51690808196691E-5 76-77 4.630262140222228E-4 0.0011191442109132876 0.0 0.728421017953871 5.51690808196691E-5 78-79 4.6696686265219916E-4 0.0011309661568032166 0.0 0.7308977156178111 5.51690808196691E-5 80-81 4.965217273770219E-4 0.001132936481118205 0.0 0.7318237680458556 5.51690808196691E-5 82-83 4.965217273770219E-4 0.0011388474540631693 0.0 0.7325803725828111 5.51690808196691E-5 84-85 4.965217273770219E-4 0.001146728751323122 0.0 0.7328995651218391 5.51690808196691E-5 86-87 4.965217273770219E-4 0.0011624913458430275 0.0 0.7330591613913532 5.51690808196691E-5 88 5.044030246369746E-4 0.0012255417239226494 0.0 0.7330709833372431 5.51690808196691E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 27765 0.0 42.719425 1 GTATCAA 47340 0.0 32.201275 1 ATCAACG 56310 0.0 26.308357 3 TCAACGC 56315 0.0 26.306017 4 CAACGCA 57120 0.0 25.91385 5 AACGCAG 57700 0.0 25.752436 6 TATCAAC 61585 0.0 24.401293 2 ACGCAGA 66795 0.0 22.160374 7 CGCAGAG 67670 0.0 21.837557 8 GTACATG 63110 0.0 20.309181 1 TACATGG 63720 0.0 19.499195 2 ACATGGG 62850 0.0 19.324142 3 CTTATAC 42710 0.0 18.740488 1 GCAGAGT 80295 0.0 18.18586 9 TATACAC 51390 0.0 17.590076 3 GAGTACT 47880 0.0 17.115578 12-13 AGAGTAC 74095 0.0 17.055489 10-11 CATGGGG 46680 0.0 16.672182 4 CAGAGTA 80085 0.0 16.33783 10-11 TTATACA 53330 0.0 15.981546 2 >>END_MODULE