##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138618_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 24441607 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.584414396320177 31.0 31.0 34.0 30.0 34.0 2 31.702527333820562 31.0 31.0 34.0 30.0 34.0 3 31.76776768401521 31.0 31.0 34.0 30.0 34.0 4 35.53978435215 37.0 35.0 37.0 33.0 37.0 5 35.382967412903746 37.0 35.0 37.0 33.0 37.0 6 35.40403439921115 37.0 35.0 37.0 33.0 37.0 7 35.30383435917287 37.0 35.0 37.0 32.0 37.0 8 35.2823687493216 37.0 35.0 37.0 32.0 37.0 9 36.865099172898084 39.0 37.0 39.0 33.0 39.0 10-11 36.735834595491205 39.0 35.0 39.0 32.0 39.0 12-13 36.70223760246206 39.0 35.0 39.0 32.0 39.0 14-15 37.83045141017119 40.0 37.0 41.0 32.0 41.0 16-17 37.78531403438407 40.0 37.0 41.0 32.0 41.0 18-19 37.815636058627405 40.0 37.0 41.0 32.0 41.0 20-21 37.79813420735791 40.0 37.0 41.0 32.0 41.0 22-23 37.70687263151042 40.0 37.0 41.0 32.0 41.0 24-25 37.64199840246897 39.0 36.5 41.0 32.0 41.0 26-27 37.45067939327967 39.0 36.0 41.0 32.0 41.0 28-29 37.303273470487966 39.0 36.0 41.0 31.0 41.0 30-31 37.15476160819941 39.0 36.0 41.0 31.0 41.0 32-33 36.941039334684646 39.0 36.0 40.0 30.0 41.0 34-35 36.81754947709748 39.0 35.0 40.0 30.0 41.0 36-37 36.67443542352551 38.5 35.0 40.0 30.0 41.0 38-39 36.53025219826439 38.0 35.0 40.0 30.0 41.0 40-41 36.42396209139426 38.0 35.0 40.0 30.0 41.0 42-43 36.20408618526862 38.0 35.0 40.0 29.5 41.0 44-45 36.055551070798316 38.0 34.5 40.0 29.0 41.0 46-47 36.0722282879507 38.0 34.5 40.0 29.0 41.0 48-49 36.37777724030936 38.5 35.0 40.0 30.0 41.0 50-51 36.66142101325424 39.0 35.0 40.0 30.0 41.0 52-53 36.65971353562351 39.0 35.0 40.0 30.0 41.0 54-55 36.58731821306541 39.0 35.0 40.0 30.0 41.0 56-57 36.46109079658629 38.5 35.0 40.0 29.5 41.0 58-59 36.32356577054672 38.0 34.5 40.0 29.0 41.0 60-61 36.158906080447906 38.0 34.0 40.0 29.0 41.0 62-63 35.98380519348213 38.0 34.0 40.0 28.5 41.0 64-65 35.77042494638338 38.0 34.0 40.0 28.0 41.0 66-67 35.55319879515538 37.0 34.0 40.0 28.0 41.0 68-69 35.30098501584896 37.0 34.0 39.5 28.0 41.0 70-71 35.02987091657619 36.0 33.0 39.0 28.0 41.0 72-73 34.75989186725378 36.0 33.0 39.0 28.0 40.5 74-75 34.450708365210616 35.5 33.0 39.0 28.0 40.0 76-77 32.70488212624619 34.0 30.5 36.5 26.0 39.0 78-79 33.70934612785132 35.0 32.0 37.0 27.0 39.0 80-81 33.741224292598986 35.0 32.0 37.0 28.0 39.0 82-83 33.5152228457527 35.0 32.0 36.0 27.5 39.0 84-85 33.2632406195677 35.0 32.0 36.0 27.0 37.0 86-87 33.03627749891555 35.0 32.0 35.5 27.0 37.0 88-89 32.86344032244121 34.0 32.0 35.0 27.0 37.0 90-91 32.736294072693255 34.0 32.0 35.0 27.0 36.0 92-93 32.65505681302324 34.0 32.0 35.0 27.0 36.0 94-95 32.620073284965514 34.0 32.0 35.0 27.0 36.0 96-97 32.69371745379101 34.0 32.0 35.0 28.0 35.5 98-99 32.817334291124126 34.0 32.0 35.0 29.0 35.0 100 31.6278347521929 34.0 30.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 5.0 19 31.0 20 276.0 21 1945.0 22 9313.0 23 30775.0 24 77075.0 25 154294.0 26 262445.0 27 391838.0 28 533838.0 29 681034.0 30 830660.0 31 989238.0 32 1174470.0 33 1407693.0 34 1733262.0 35 2182162.0 36 2913551.0 37 4031066.0 38 4560551.0 39 2383789.0 40 92294.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.758290320272316 22.802093168423827 15.216564933721422 23.22305157758244 2 13.877345034091713 22.749906775351207 42.52075354351969 20.85199464703739 3 17.032734386081895 28.507638634399118 32.13571431698415 22.323912662534834 4 11.798214560786823 19.99133853934715 40.58122615106496 27.62922074880107 5 11.718390693377895 39.238999301478 37.30568943359575 11.736920571548344 6 27.25238974671346 40.98829917361817 19.539570372766406 12.219740706901964 7 24.035531118491164 33.83852610723186 25.17168195599291 16.95426081828407 8 22.54584978802744 38.971377782156466 22.216423821887 16.266348607929093 9 24.322713314226842 17.223838841693183 22.356602820755608 36.09684502332436 10-11 22.729504950106165 27.90274710772786 30.6872255524056 18.680522389760373 12-13 23.68376763369798 25.32639600520269 30.51240466531832 20.47743169578101 14-15 20.89346604938499 26.949581025666582 27.668098911377825 24.488854013570606 16-17 20.536512654855557 30.195827869792474 28.36102734329595 20.906632132056018 18-19 20.5445010699285 29.29786288627377 29.90639335134812 20.25124269244961 20-21 21.229685469577543 28.433863447468422 29.763495492238384 20.572955590715647 22-23 20.9759952244051 28.688423841495396 29.55711877870225 20.77846215539725 24-25 20.94519602241978 28.884403273723997 29.542444737772456 20.62795596608377 26-27 20.967543733602 29.05215066245755 29.39295628778002 20.58734931616043 28-29 20.871064661690507 28.992259439656486 29.446681435384942 20.689994463268057 30-31 21.286996951599228 28.771067580560572 29.39012414418962 20.55181132365058 32-33 20.999730176468052 28.86411585577259 29.412674635957625 20.723479331801737 34-35 21.051419066575498 28.75173237977239 29.4617495840386 20.735098969613517 36-37 20.9133844019455 28.98775987788505 29.392802119394457 20.706053600774986 38-39 20.867141579936032 28.694736285470984 29.558662762571352 20.879459372021625 40-41 21.01655624458149 28.607559255210578 29.542559079033182 20.83332542117475 42-43 21.206660603800735 28.67749846773314 29.235564394343598 20.880276534122526 44-45 20.997162686785632 28.930863882409742 29.080890946621324 20.991082484183305 46-47 21.29912328469868 28.67651898266975 28.737956348725323 21.28640138390624 48-49 21.145331246404908 28.795559311243284 28.73699604906232 21.32211339328948 50-51 20.970146929513927 28.82595196157491 28.90344030996405 21.300460798947114 52-53 21.07063222177441 28.85763310064743 28.923495929695537 21.148238747882626 54-55 21.11026726624945 28.792092188645608 28.77565541412318 21.321985130981762 56-57 21.319523163367457 28.85602330234926 28.54791309172045 21.27654044256283 58-59 20.991897740902406 29.055399300248208 28.845532902058984 21.10717005679041 60-61 21.28208121071091 29.295177061503303 28.437558517283158 20.98518321050263 62-63 21.058450531706995 29.431782216868825 28.4000126454538 21.109754605970384 64-65 21.039030390121084 29.306926569373093 28.413445239201877 21.240597801303945 66-67 21.14570485630132 29.222129953237086 28.315813676304348 21.316351514157244 68-69 21.146774203184513 29.097516926924083 28.39906791502274 21.35664095486866 70-71 21.192708709831994 28.845953218016028 28.497582866082848 21.463755206069127 72-73 21.245510771306936 28.85800893420453 28.421504268167418 21.47497602632111 74-75 21.23045644807654 28.981889961228596 28.365503095925465 21.422150494769397 76-77 21.30619373130678 28.936536853492612 28.309028725665737 21.448240689534874 78-79 21.264914266420682 28.93088303838745 28.280546265013434 21.523656430178438 80-81 21.269607651760253 28.945321408976177 28.307276435890504 21.477794503373065 82-83 21.312541548426132 28.944197377835696 28.39833187075599 21.344929202982186 84-85 21.40421526649013 28.954683304163904 28.324753282257113 21.316348147088853 86-87 21.241540793108665 29.015049012591156 28.406872331445886 21.336537862854296 88-89 21.312306207227714 28.97291020260793 28.380371405643196 21.334412184521163 90-91 21.352303324477052 29.015226463805423 28.394775999705757 21.23769421201177 92-93 21.376034498727574 28.962781402527565 28.385450499727717 21.275733599017148 94-95 21.195147723977932 28.969653825860725 28.54404714499235 21.29115130516899 96-97 21.12042949872545 29.07824304352602 28.737919459914274 21.063407997834254 98-99 22.122406168181357 31.013412289290223 29.032867467348378 17.831314075180046 100 21.44244867842859 31.71682182452813 22.812605451304975 24.028124045738302 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5266.0 1 4674.0 2 6590.0 3 9506.5 4 12598.5 5 20848.5 6 28179.5 7 32537.0 8 34545.5 9 32853.5 10 29399.0 11 25987.5 12 27548.5 13 35824.5 14 56445.0 15 86067.5 16 111542.0 17 127496.5 18 135045.5 19 136708.0 20 133440.0 21 129957.0 22 131502.0 23 145708.5 24 175951.0 25 222144.5 26 284305.0 27 357038.0 28 442098.5 29 539950.5 30 640436.5 31 738854.0 32 831897.0 33 908852.5 34 974370.5 35 1023814.5 36 1059354.0 37 1083637.0 38 1080201.5 39 1055765.5 40 1033735.5 41 1013093.5 42 985656.5 43 962687.5 44 942467.5 45 933558.5 46 944027.0 47 950277.5 48 925813.5 49 888834.5 50 859978.5 51 821802.5 52 766305.5 53 698961.5 54 630866.5 55 570683.0 56 514764.0 57 457909.5 58 400814.5 59 345055.5 60 288243.5 61 233214.0 62 184861.0 63 143886.0 64 110320.0 65 84855.0 66 66214.5 67 52013.5 68 40020.0 69 30079.5 70 22750.5 71 17060.5 72 12718.5 73 9685.5 74 7396.5 75 5551.0 76 4172.0 77 2976.5 78 2028.5 79 1443.0 80 1035.0 81 715.0 82 529.5 83 408.5 84 305.5 85 218.5 86 153.5 87 119.0 88 95.5 89 69.5 90 42.0 91 25.0 92 21.5 93 15.5 94 8.5 95 4.5 96 3.0 97 2.5 98 1.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.11236167900089385 3 0.0 4 8.182768015212747E-6 5 0.0 6 0.0 7 1.882036643498932E-4 8 0.0 9 0.0 10-11 4.091384007606374E-5 12-13 6.750783612550517E-5 14-15 0.0010351201539244128 16-17 1.6365536030425496E-4 18-19 8.387337215593065E-5 20-21 7.426308161060544E-4 22-23 4.194628984247879E-4 24-25 3.704794370300911E-4 26-27 0.0021483961751502818 28-29 0.003952016776885162 30-31 0.010983115077543995 32-33 0.008122062717196428 34-35 0.007311981575129867 36-37 0.0038542484555409012 38-39 6.343078395173533E-4 40-41 2.278696479274686E-4 42-43 3.214275025376808E-4 44-45 2.3650004528975867E-5 46-47 0.0 48-49 4.395814331967986E-5 50-51 0.0 52-53 0.001366569498348019 54-55 6.76005826582394E-4 56-57 8.633470530904537E-4 58-59 7.161487902144691E-5 60-61 5.028061494267846E-4 62-63 4.049370493388089E-4 64-65 9.140697210158448E-4 66-67 9.076220346491647E-4 68-69 3.2587515377233817E-4 70-71 2.7533344256561914E-4 72-73 0.0 74-75 2.5719006327672844E-6 76-77 2.8941733016893287E-4 78-79 9.784302408987807E-5 80-81 3.168371787700617E-4 82-83 3.2734079630340586E-5 84-85 8.312615063910432E-6 86-87 0.0 88-89 1.1465754542961264E-5 90-91 0.0 92-93 0.0 94-95 1.0115309625336289E-4 96-97 0.0 98-99 7.021552303718649E-6 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 845.0 20-21 3330.0 22-23 6835.0 24-25 12919.0 26-27 18589.0 28-29 31134.0 30-31 74298.0 32-33 87634.0 34-35 118329.0 36-37 159979.0 38-39 181142.0 40-41 203095.0 42-43 225968.0 44-45 254515.0 46-47 255114.0 48-49 229448.0 50-51 209722.0 52-53 201737.0 54-55 216328.0 56-57 243923.0 58-59 258803.0 60-61 268199.0 62-63 270898.0 64-65 281250.0 66-67 303741.0 68-69 279770.0 70-71 273045.0 72-73 264223.0 74-75 268041.0 76-77 260193.0 78-79 284402.0 80-81 292917.0 82-83 285290.0 84-85 286286.0 86-87 304769.0 88-89 333680.0 90-91 364204.0 92-93 401754.0 94-95 485747.0 96-97 1017620.0 98-99 1580425.0 100-101 1.3341466E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.90953129990802 #Duplication Level Percentage of deduplicated Percentage of total 1 87.7958695822669 70.157267883868 2 7.578983701053008 12.11266070561576 3 2.2340890397137674 5.355750241373663 4 0.9548993870208284 3.0522224982161545 5 0.4817385861687255 1.9247752314911604 6 0.29769796346967886 1.4273342837879506 7 0.17748877422057419 0.9928131331272896 8 0.11590625138796053 0.7409611378512991 9 0.08344190595578156 0.6001023236127757 >10 0.27541514265070544 3.323047141514715 >50 0.003673342005712951 0.1935929430542606 >100 7.302408226861256E-4 0.08272584627220814 >500 6.60832637644234E-5 0.03674663021464786 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.045692003803187E-5 0.0 8.182768015212747E-6 0.0 3 0.0 2.045692003803187E-5 0.0 1.6365536030425494E-5 0.0 4 0.0 4.091384007606374E-5 0.0 3.273107206085099E-5 0.0 5 1.6365536030425494E-5 4.091384007606374E-5 0.0 3.273107206085099E-5 0.0 6 7.77362961445211E-5 4.091384007606374E-5 0.0 3.273107206085099E-5 0.0 7 7.77362961445211E-5 4.091384007606374E-5 0.0 6.137076011409561E-5 4.0913840076063735E-6 8 8.591906415973386E-5 6.137076011409561E-5 0.0 6.137076011409561E-5 4.0913840076063735E-6 9 8.591906415973386E-5 1.268329042357976E-4 0.0 8.591906415973386E-5 4.0913840076063735E-6 10-11 1.2069582822438803E-4 1.268329042357976E-4 0.0 1.0433029219396253E-4 4.0913840076063735E-6 12-13 1.3501567225101033E-4 1.288785962396008E-4 0.0 1.3092428824340395E-4 4.0913840076063735E-6 14-15 1.431984402662231E-4 1.9638643236510596E-4 0.0 1.7797520433087725E-4 4.0913840076063735E-6 16-17 1.8206658833848363E-4 2.004778163727123E-4 0.0 2.045692003803187E-4 4.0913840076063735E-6 18-19 1.882036643498932E-4 2.18889044406941E-4 0.0 2.2707181242215374E-4 4.0913840076063735E-6 20-21 1.882036643498932E-4 2.332088884335633E-4 0.0 2.598028844830047E-4 4.0913840076063735E-6 22-23 1.902493563536964E-4 2.782141125172334E-4 0.0 2.904882645400525E-4 4.0913840076063735E-6 24-25 2.229804284145474E-4 3.2321933660090353E-4 0.0 3.886814807226055E-4 4.0913840076063735E-6 26-27 2.4343734845257926E-4 3.457219486427386E-4 0.0 5.912049890991211E-4 4.0913840076063735E-6 28-29 2.495744244639888E-4 3.4776764064654175E-4 0.0 0.0015281319268409805 4.0913840076063735E-6 30-31 2.536658084715952E-4 3.804987127073928E-4 0.0 0.005130595545538393 4.0913840076063735E-6 32-33 2.577571924792016E-4 3.8459009671499916E-4 0.0 0.012975824380123614 4.0913840076063735E-6 34-35 2.782141125172334E-4 4.398237808176852E-4 0.0 0.022019828728937506 4.0913840076063735E-6 36-37 2.9457964854765894E-4 4.971031569241744E-4 0.0 0.03587734636270029 4.0913840076063735E-6 38-39 2.9457964854765894E-4 5.114230009507967E-4 0.0 0.07519350098379374 4.0913840076063735E-6 40-41 2.9457964854765894E-4 5.809765290801051E-4 0.0 0.11667604343691476 8.182768015212747E-6 42-43 2.9457964854765894E-4 5.932506811029242E-4 0.0 0.14403512829577858 8.182768015212747E-6 44-45 3.0480810856667486E-4 6.709869772474452E-4 0.0 0.17907578662892337 8.182768015212747E-6 46-47 3.150365685856908E-4 7.384948133729505E-4 0.0 0.2146503705750608 8.182768015212747E-6 48-49 3.150365685856908E-4 7.405405053767537E-4 0.0 0.24726483819169498 8.182768015212747E-6 50-51 3.314021046161163E-4 8.141854175136684E-4 0.0 0.2816017784755315 8.182768015212747E-6 52-53 3.4163056463513226E-4 8.223681855288812E-4 0.0 0.3610789585152891 8.182768015212747E-6 54-55 3.436762566389354E-4 8.305509535440939E-4 0.0 0.45804475949556017 8.182768015212747E-6 56-57 3.436762566389354E-4 8.510078735821258E-4 0.0 0.5525475473032522 8.182768015212747E-6 58-59 3.436762566389354E-4 8.550992575897321E-4 0.0 0.6021228473234186 8.182768015212747E-6 60-61 3.477676406465418E-4 8.694191016163544E-4 0.0 0.6304168134280206 8.182768015212747E-6 62-63 3.600417926693609E-4 8.776018696315673E-4 0.0 0.6506814384176949 8.182768015212747E-6 64-65 3.600417926693609E-4 9.982976978559553E-4 0.0 0.6585328043282914 8.182768015212747E-6 66-67 3.6413317667696726E-4 0.0010085261578749712 0.0 0.6660200370622111 8.182768015212747E-6 68-69 3.764073286997864E-4 0.0010330744619206095 0.0 0.6729426588030811 8.182768015212747E-6 70-71 3.907271727264087E-4 0.001051485689954838 0.0 0.6789385820662284 8.182768015212747E-6 72-73 4.1322978476824375E-4 0.001059668457970051 0.0 0.683545480458793 8.182768015212747E-6 74-75 4.1732116877585013E-4 0.0010964909140385082 0.0 0.6870292939412699 8.182768015212747E-6 76-77 4.214125527834565E-4 0.001147633214133588 0.0 0.6904824220436896 8.182768015212747E-6 78-79 4.255039367910629E-4 0.0011660444421678164 0.0 0.6929229326042269 8.182768015212747E-6 80-81 4.255039367910629E-4 0.0011680901341716197 0.0 0.6937882603218356 8.182768015212747E-6 82-83 4.316410128024725E-4 0.0011742272101830293 0.0 0.6944878869871363 8.182768015212747E-6 84-85 4.398237808176852E-4 0.0011905927462134548 0.0 0.694802923555722 8.182768015212747E-6 86-87 4.4391516482529157E-4 0.0012049125902400771 0.0 0.6949727159920377 8.182768015212747E-6 88 4.4596085682909473E-4 0.0012519635063275505 0.0 0.6949993099880871 8.182768015212747E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 30040 0.0 42.3461 1 GTATCAA 51830 0.0 30.89984 1 TCAACGC 58240 0.0 26.65466 4 ATCAACG 58480 0.0 26.552315 3 CAACGCA 59070 0.0 26.266186 5 AACGCAG 60230 0.0 25.801344 6 TATCAAC 63465 0.0 24.754198 2 CGCAGAG 68515 0.0 22.591164 8 ACGCAGA 68620 0.0 22.562645 7 CTTATAC 39920 0.0 21.732685 1 TATACAC 52580 0.0 19.011553 3 GCAGAGT 81280 0.0 18.860956 9 GTACATG 59490 0.0 18.811525 1 TACATGG 58805 0.0 18.525791 2 ACATGGG 58595 0.0 18.163532 3 GAGTACT 50230 0.0 17.703682 12-13 TTATACA 52090 0.0 17.549692 2 AGAGTAC 74545 0.0 17.44887 10-11 CAGAGTA 80575 0.0 17.193521 10-11 TATGCCG 24640 0.0 17.112034 42-43 >>END_MODULE