##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138617_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 21697473 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.527385470188165 31.0 31.0 34.0 30.0 34.0 2 31.6376495548583 31.0 31.0 34.0 30.0 34.0 3 31.701613916053727 31.0 31.0 34.0 30.0 34.0 4 35.48925282681536 37.0 35.0 37.0 33.0 37.0 5 35.32507647319114 37.0 35.0 37.0 33.0 37.0 6 35.34808873825998 37.0 35.0 37.0 32.0 37.0 7 35.24625337706377 37.0 35.0 37.0 32.0 37.0 8 35.22363751760401 37.0 35.0 37.0 32.0 37.0 9 36.80036255834953 39.0 37.0 39.0 32.0 39.0 10-11 36.66415874788737 39.0 35.0 39.0 32.0 39.0 12-13 36.62920608312314 39.0 35.0 39.0 32.0 39.0 14-15 37.738748171273215 40.0 37.0 41.0 32.0 41.0 16-17 37.692567424787214 39.5 36.0 41.0 32.0 41.0 18-19 37.71880206971568 39.5 36.5 41.0 32.0 41.0 20-21 37.69160207663796 40.0 37.0 41.0 32.0 41.0 22-23 37.59857822795155 39.0 36.0 41.0 32.0 41.0 24-25 37.53153348265499 39.0 36.0 41.0 32.0 41.0 26-27 37.33251140487485 39.0 36.0 41.0 31.0 41.0 28-29 37.1734218321144 39.0 36.0 41.0 31.0 41.0 30-31 37.01281907560629 39.0 36.0 40.5 30.5 41.0 32-33 36.788821954317065 39.0 35.0 40.0 30.0 41.0 34-35 36.66094481070951 38.5 35.0 40.0 30.0 41.0 36-37 36.51134485198264 38.0 35.0 40.0 30.0 41.0 38-39 36.38570830175891 38.0 35.0 40.0 30.0 41.0 40-41 36.25874084308464 38.0 35.0 40.0 30.0 41.0 42-43 36.010150392974964 38.0 34.5 40.0 29.0 41.0 44-45 35.84597179560171 38.0 34.0 40.0 28.5 41.0 46-47 35.85626648919748 38.0 34.0 40.0 28.5 41.0 48-49 36.15686936601245 38.0 34.5 40.0 29.5 41.0 50-51 36.46305051362616 38.5 35.0 40.0 30.0 41.0 52-53 36.44413108265232 38.5 35.0 40.0 30.0 41.0 54-55 36.35327482509912 38.0 35.0 40.0 29.0 41.0 56-57 36.218982628487105 38.0 34.0 40.0 29.0 41.0 58-59 36.07040297891646 38.0 34.0 40.0 28.5 41.0 60-61 35.88850249023784 38.0 34.0 40.0 28.0 41.0 62-63 35.6863151110787 38.0 34.0 40.0 28.0 41.0 64-65 35.45152586531198 37.0 34.0 40.0 28.0 41.0 66-67 35.21317847890204 37.0 33.0 39.5 28.0 41.0 68-69 34.9362884186737 36.0 33.0 39.0 28.0 41.0 70-71 34.65345691057616 36.0 33.0 39.0 28.0 40.5 72-73 34.3719822306422 35.5 32.5 39.0 27.0 40.0 74-75 34.0617835877582 35.0 32.0 38.0 27.0 40.0 76-77 32.34342571940229 33.5 30.5 36.0 25.5 39.0 78-79 33.35018307898594 35.0 31.5 37.0 26.0 39.0 80-81 33.39226685019661 35.0 32.0 36.0 27.0 39.0 82-83 33.18929130635375 35.0 32.0 36.0 26.5 37.5 84-85 32.96727310774996 34.5 32.0 36.0 26.0 37.0 86-87 32.76259997461969 34.0 32.0 35.0 26.0 37.0 88-89 32.61022101851326 34.0 31.5 35.0 26.0 36.0 90-91 32.502992518542 34.0 31.0 35.0 26.0 36.0 92-93 32.43964486833968 34.0 31.0 35.0 26.5 36.0 94-95 32.41653971686898 34.0 31.0 35.0 27.0 35.5 96-97 32.51536295590361 34.0 31.5 35.0 27.0 35.0 98-99 32.66369223488408 34.0 32.0 35.0 28.5 35.0 100 31.4490972493109 33.0 30.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 2.0 18 10.0 19 52.0 20 302.0 21 1949.0 22 9177.0 23 30041.0 24 74395.0 25 150890.0 26 256376.0 27 381742.0 28 517679.0 29 655651.0 30 791349.0 31 936594.0 32 1106992.0 33 1322438.0 34 1623771.0 35 2035791.0 36 2705114.0 37 3654434.0 38 3744960.0 39 1646982.0 40 50781.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.06257779419751 21.631311627856388 14.949386041406756 23.356724536539346 2 14.694281985395502 22.525343603945167 41.0332809218636 21.747093488795727 3 17.711993465782857 27.414238515240925 31.602233126410617 23.271534892565597 4 12.45549193677992 19.283766363023013 39.62018526304883 28.640556437148234 5 12.414717603289564 38.68526533020689 36.484373088055 12.41564397844855 6 28.760151009290347 39.82404310400571 18.933762470864696 12.482043415839254 7 25.123606850620316 33.50046378781774 24.279852233136268 17.096077128425673 8 23.66183379972405 37.8121498296138 21.549610869431664 16.976405501230488 9 25.08210518340085 16.722841411071236 21.57926409218253 36.61578931334538 10-11 23.494041135269107 27.27601316163062 29.97135586839448 19.258589834705795 12-13 24.39506749683442 24.924544170189122 29.849481934799567 20.830906398176893 14-15 21.593833841200652 26.397129813762728 27.25807000217723 24.75096634285939 16-17 21.150342239707236 29.446065718771365 27.904946014710447 21.498646026810952 18-19 21.145011325868264 28.60835950172678 29.575791002386527 20.67083817001843 20-21 22.010095310077517 27.80767370963721 29.375985241763424 20.806245738521852 22-23 21.6963361713982 27.72574154323344 29.263450920492158 21.3144713648762 24-25 21.502211063275784 27.86608852313959 29.310830940516507 21.320869473068118 26-27 21.505504376658024 28.009679277327997 29.1790044537734 21.305811892240577 28-29 21.47487046003442 28.036015196351237 29.184633330891224 21.304481012723112 30-31 21.779070114909672 27.871414166897722 29.09358587612159 21.255929842071016 32-33 21.659623678340708 28.045900491791315 28.97536802925444 21.319107800613537 34-35 21.668844644457337 28.05500642753913 28.995892367489056 21.28025656051447 36-37 21.712227876615955 27.98621736653922 28.986246606681487 21.315308150163336 38-39 21.527336239099085 28.10705914507381 29.025381937722823 21.34022267810429 40-41 21.770875953336432 28.01601879838776 28.854888274388102 21.358216973887703 42-43 21.786158337472404 28.1160758803507 28.58689291620188 21.510872865975024 44-45 21.783411946804158 28.201917953925275 28.44599281560582 21.568677283664744 46-47 21.850559302432686 28.171254296562605 28.201550149590798 21.776636251413912 48-49 21.773046463652054 28.27189110031485 28.248519777240798 21.70654265879229 50-51 21.73203138459736 28.40262617365793 28.12758892393609 21.73775351780862 52-53 21.90188228152254 28.275925568872 28.03379295183556 21.788399197769902 54-55 21.892376255096735 28.175644983201884 28.112055223310307 21.819923538391073 56-57 21.837094197400393 28.251241221050606 28.082259138877795 21.82940544267121 58-59 21.77961125519753 28.23412913918962 28.040804418982646 21.945455186630205 60-61 21.95275969466287 28.190682428555196 28.183174969391523 21.67338290739041 62-63 21.72965427829219 28.28020879569894 28.10577959416592 21.88435733184295 64-65 21.703449651568928 28.27128707007361 28.058779403597654 21.966483874759803 66-67 21.77707306557822 28.34437253648272 28.068830374859626 21.809724023079426 68-69 21.752967741505106 28.481905568481565 27.953622585000275 21.811504105013057 70-71 21.74748110624621 28.223490069117968 27.85541704061181 22.173611784024015 72-73 21.81487329239939 28.233633019650046 27.795322437345355 22.156171250605205 74-75 21.73944939253369 28.344117416370256 27.975008952084945 21.94142423901111 76-77 21.83734533927573 28.087649702182226 27.939596226311693 22.135408732230353 78-79 21.82557699768852 28.1247646326768 27.679689160067845 22.369969209566836 80-81 22.01977551468671 28.279904512278044 27.69801891220839 22.002301060826856 82-83 22.028414106294072 28.084928009311334 27.80846526627581 22.078192618118784 84-85 21.948086169903032 28.025956614582974 27.81086537372351 22.215091841790485 86-87 21.782418222222343 28.2071430971451 27.89496840944873 22.11547027118383 88-89 22.046750790416244 28.221921653361242 27.86613926197391 21.865188294248604 90-91 22.110072774590172 28.149639745533488 27.940150711931256 21.800136767945077 92-93 21.923836004522574 27.86624047212427 27.956616258104056 22.2533072652491 94-95 21.926318187467032 28.111954781914424 28.118667940717796 21.843059089900745 96-97 22.123704834037163 28.044327603884533 28.255096744663682 21.57687081741462 98-99 22.84086921739362 30.13937868610092 28.600616695073438 18.41913540143202 100 22.141466817022806 30.905135674919066 22.37950706255358 24.57389044550455 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4509.0 1 3940.5 2 5361.5 3 7817.0 4 10350.0 5 17001.0 6 23285.5 7 28065.5 8 31396.5 9 31205.5 10 28647.5 11 25655.0 12 27017.0 13 34622.0 14 54845.0 15 84325.0 16 109414.5 17 124764.0 18 131359.5 19 131683.0 20 126726.5 21 119321.5 22 115192.5 23 121254.0 24 141251.0 25 174637.0 26 219096.5 27 269726.0 28 323078.5 29 382535.5 30 440226.0 31 496455.5 32 556143.5 33 610384.5 34 662421.5 35 709773.5 36 756184.5 37 793073.0 38 810592.5 39 826178.0 40 848227.5 41 864307.0 42 872256.0 43 883522.0 44 889126.0 45 889165.5 46 884993.0 47 876671.0 48 866306.5 49 848068.0 50 824327.0 51 791385.0 52 748979.5 53 704862.0 54 658217.5 55 607361.5 56 555610.0 57 502103.0 58 446150.0 59 388891.0 60 327001.0 61 266428.0 62 212590.5 63 166329.5 64 127987.0 65 97457.0 66 74774.0 67 58495.0 68 45909.0 69 34533.5 70 25815.5 71 19624.0 72 14992.5 73 11313.5 74 8407.5 75 6312.0 76 4742.5 77 3410.0 78 2430.0 79 1768.5 80 1258.0 81 918.5 82 682.0 83 472.0 84 318.5 85 209.5 86 143.0 87 115.5 88 86.5 89 67.5 90 55.0 91 42.5 92 34.0 93 21.5 94 11.5 95 8.0 96 7.0 97 6.5 98 3.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.10814162552477886 3 0.0 4 0.0 5 0.0 6 0.0 7 2.3505041347441703E-4 8 0.0 9 0.0 10-11 4.378390054915612E-5 12-13 5.0697148004286025E-5 14-15 9.448104855344215E-4 16-17 1.59004691467988E-4 18-19 8.987221691668887E-5 20-21 7.213320019956698E-4 22-23 4.079760187547267E-4 24-25 3.2971927954170035E-4 26-27 0.0018710366207316026 28-29 0.0036364742943288874 30-31 0.0102588220319165 32-33 0.007796066769496192 34-35 0.007044338992495172 36-37 0.003482964432664274 38-39 6.189151434156995E-4 40-41 1.9193404065845414E-4 42-43 3.487698386136848E-4 44-45 1.687880959253613E-5 46-47 0.0 48-49 3.445281776430596E-5 50-51 0.0 52-53 0.001248838911417904 54-55 5.8783284899775E-4 56-57 7.60979864141934E-4 58-59 4.6164626185914746E-5 60-61 3.387784425191255E-4 62-63 3.8663205055872375E-4 64-65 7.865020621661786E-4 66-67 8.72712925006524E-4 68-69 2.2416292701687217E-4 70-71 2.4881006586002444E-4 72-73 2.7683880208085334E-6 74-75 8.409661052255475E-6 76-77 2.782738830050842E-4 78-79 1.524760777260903E-4 80-81 2.946927097604472E-4 82-83 1.1546777609684987E-4 84-85 4.2065153875534735E-5 86-87 0.0 88-89 6.209387308266927E-6 90-91 0.0 92-93 0.0 94-95 6.304989463367083E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 902.0 20-21 2953.0 22-23 5777.0 24-25 11830.0 26-27 14756.0 28-29 26741.0 30-31 62093.0 32-33 72451.0 34-35 95878.0 36-37 123702.0 38-39 140481.0 40-41 164560.0 42-43 187618.0 44-45 212247.0 46-47 210697.0 48-49 181426.0 50-51 164865.0 52-53 159415.0 54-55 167854.0 56-57 183534.0 58-59 123795.0 60-61 196560.0 62-63 193079.0 64-65 204305.0 66-67 221067.0 68-69 225087.0 70-71 226935.0 72-73 223623.0 74-75 232086.0 76-77 221531.0 78-79 241318.0 80-81 248664.0 82-83 246304.0 84-85 253279.0 86-87 272053.0 88-89 301848.0 90-91 332279.0 92-93 373012.0 94-95 446302.0 96-97 1016743.0 98-99 1489721.0 100-101 1.2218102E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.30866720586435 #Duplication Level Percentage of deduplicated Percentage of total 1 89.50233005102905 75.45822158421639 2 7.234358933555694 12.198383195538375 3 1.7630896551388713 4.459312169676158 4 0.6756044789857922 2.2783725272641813 5 0.31258491210652384 1.3176808664181634 6 0.16337970567803706 0.8264595140521016 7 0.09689888864530845 0.5718591308790791 8 0.06995062490323638 0.4717955164647362 9 0.03764499966661716 0.28564197739719305 >10 0.1414384847338878 1.81634447474938 >50 0.001965701261498615 0.10918092389485068 >100 6.494074161959997E-4 0.0827801919941186 >500 3.8048796689253094E-5 0.020931051656789407 >1k 6.610808267420269E-5 0.10303687579845218 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.6088316367532755E-6 2 0.0 1.8435326547013102E-5 0.0 4.6088316367532755E-6 4.6088316367532755E-6 3 0.0 1.8435326547013102E-5 0.0 4.6088316367532755E-6 4.6088316367532755E-6 4 0.0 7.374130618805241E-5 0.0 9.217663273506551E-6 4.6088316367532755E-6 5 0.0 8.756780109831224E-5 0.0 1.8435326547013102E-5 4.6088316367532755E-6 6 1.8435326547013102E-5 8.756780109831224E-5 0.0 1.8435326547013102E-5 9.217663273506551E-6 7 1.8435326547013102E-5 8.756780109831224E-5 0.0 3.2261821457272926E-5 9.217663273506551E-6 8 2.3044158183766377E-5 9.678546437181878E-5 0.0 5.069714800428603E-5 9.217663273506551E-6 9 2.3044158183766377E-5 1.7974443383337774E-4 0.0 9.678546437181878E-5 1.3826494910259826E-5 10-11 3.2261821457272926E-5 1.7974443383337774E-4 0.0 1.290472858290917E-4 1.6130910728636463E-5 12-13 3.2261821457272926E-5 1.7974443383337774E-4 0.0 1.7283118637824782E-4 1.8435326547013102E-5 14-15 4.1479484730779475E-5 2.5118132420305346E-4 0.0 1.7974443383337774E-4 2.765298982051965E-5 16-17 5.53059796410393E-5 2.7192106656844325E-4 0.0 2.073974236538974E-4 3.2261821457272926E-5 18-19 6.913247455129912E-5 3.110961354808461E-4 0.0 2.3274599765604043E-4 3.2261821457272926E-5 20-21 7.604572200642904E-5 3.5027120439324894E-4 0.0 3.134005512992227E-4 3.2261821457272926E-5 22-23 7.835013782480568E-5 3.710109467586387E-4 0.0 5.553642122287696E-4 3.917506891240284E-5 24-25 9.217663273506551E-5 3.9866393657915836E-4 0.0 0.0012121227204661116 4.839273218590939E-5 26-27 1.0830754346370197E-4 4.2862134221805464E-4 0.0 0.0032584439671845657 5.53059796410393E-5 28-29 1.106119592820786E-4 4.332301738548079E-4 0.0 0.011259375688588251 5.53059796410393E-5 30-31 1.106119592820786E-4 4.7470965858558735E-4 0.0 0.014633040446691649 5.53059796410393E-5 32-33 1.1752520673720851E-4 4.7931849022234065E-4 0.0 0.02143798035835786 5.991481127779258E-5 34-35 1.405693649209749E-4 5.691907071390294E-4 0.0 0.029634787424323558 7.835013782480568E-5 36-37 1.4748261237610482E-4 6.452364291454585E-4 0.0 0.044041995120814297 7.835013782480568E-5 38-39 1.4748261237610482E-4 6.590629240557184E-4 0.0 0.0768384410479506 7.835013782480568E-5 40-41 1.659179389231179E-4 7.212821511518876E-4 0.0 0.11035386471042043 8.526338527993559E-5 42-43 1.659179389231179E-4 7.489351409724072E-4 0.0 0.13402251958096686 8.756780109831224E-5 44-45 1.6822235474149455E-4 8.526338527993559E-4 0.0 0.16432789200843803 8.987221691668887E-5 46-47 1.7513560219662447E-4 9.28679574805785E-4 0.0 0.1956886868807257 9.448104855344214E-5 48-49 1.7513560219662447E-4 9.355928222609149E-4 0.0 0.2252289932564958 1.106119592820786E-4 50-51 1.8204884965175436E-4 0.001073857771363513 0.0 0.25659439696042025 1.106119592820786E-4 52-53 1.8435326547013101E-4 0.0010922930979105263 0.0 0.3247290594623623 1.1291637510045524E-4 54-55 1.8435326547013101E-4 0.001101510761184033 0.0 0.40923429193805194 1.1752520673720853E-4 56-57 1.8435326547013101E-4 0.0011245549193677992 0.0 0.4941658413401413 1.221340383739618E-4 58-59 1.958753445620142E-4 0.0011314681668229292 0.0 0.7053378981045396 1.2443845419233843E-4 60-61 2.0509300783552075E-4 0.001152207909188319 0.0 0.8834369790435964 1.3365611746584498E-4 62-63 2.1661508692740394E-4 0.0011683388199169552 0.0 0.8925762921792781 1.3365611746584498E-4 64-65 2.1661508692740394E-4 0.0013273435113849432 0.0 0.8994296248231304 1.3365611746584498E-4 66-67 2.212239185641572E-4 0.0013526920853870862 0.0 0.9059234685993157 1.3365611746584498E-4 68-69 2.3044158183766378E-4 0.0013780406593892293 0.0 0.9120555190920159 1.3365611746584498E-4 70-71 2.3044158183766378E-4 0.0013895627384811126 0.0 0.9170353616755278 1.3826494910259827E-4 72-73 2.580945716581834E-4 0.0014010848175729958 0.0 0.9209897392198622 1.659179389231179E-4 74-75 2.580945716581834E-4 0.001431042223211892 0.0 0.9240960917430339 1.659179389231179E-4 76-77 2.6039898747656006E-4 0.0014725217079426716 0.0 0.9271632691972931 1.659179389231179E-4 78-79 2.627034032949367E-4 0.0014932614503080613 0.0 0.9292072860281932 1.659179389231179E-4 80-81 2.627034032949367E-4 0.0014955658661264378 0.0 0.9299884829906229 1.7283118637824782E-4 82-83 2.627034032949367E-4 0.0015024791135815677 0.0 0.9305023677181209 1.8204884965175436E-4 84-85 2.627034032949367E-4 0.0015232188559469576 0.0 0.9307489402106872 1.8435326547013101E-4 86-87 2.6731223493168995E-4 0.0015600895090409836 0.0 0.9308411168434223 1.8435326547013101E-4 88 2.7192106656844325E-4 0.0016084822412268931 0.0 0.9308457256750591 1.8896209710688429E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 25720 0.0 48.406666 1 GTATCAA 45095 0.0 34.330235 1 TCAACGC 54130 0.0 27.696905 4 ATCAACG 54335 0.0 27.553976 3 CAACGCA 55545 0.0 26.953737 5 AACGCAG 57160 0.0 26.199493 6 TATCAAC 58055 0.0 26.047157 2 ACGCAGA 66345 0.0 22.553473 7 AGACCGA 18205 0.0 22.48068 88-89 ACCGAGG 18705 0.0 22.458338 90-91 CGCAGAG 66720 0.0 22.439281 8 GACCGAG 18375 0.0 22.268522 90-91 CGAGACC 19095 0.0 21.482246 86-87 GAGACCG 18655 0.0 21.357674 88-89 ACGAGAC 19845 0.0 20.38944 86-87 CACGAGA 20865 0.0 19.680733 84-85 CCCACGA 20605 0.0 19.53787 82-83 GCCCACG 20655 0.0 18.959013 82-83 GTACATG 55735 0.0 18.902704 1 GCAGAGT 78790 0.0 18.795439 9 >>END_MODULE