##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138610_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 22776539 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.448582903662405 31.0 31.0 34.0 30.0 34.0 2 31.56114232280857 31.0 31.0 34.0 30.0 34.0 3 31.64473478608844 31.0 31.0 34.0 30.0 34.0 4 35.443292635461425 37.0 35.0 37.0 33.0 37.0 5 35.245316551386495 37.0 35.0 37.0 32.0 37.0 6 35.254968061653265 37.0 35.0 37.0 32.0 37.0 7 35.16769913989127 37.0 35.0 37.0 32.0 37.0 8 35.093502046118594 37.0 35.0 37.0 32.0 37.0 9 36.63806849671059 39.0 35.0 39.0 32.0 39.0 10-11 36.56790241484889 39.0 35.0 39.0 32.0 39.0 12-13 36.53514800909831 39.0 35.0 39.0 32.0 39.0 14-15 37.63200576698681 39.0 36.0 41.0 32.0 41.0 16-17 37.5969719323906 39.0 36.0 41.0 32.0 41.0 18-19 37.61403045036825 39.0 36.0 41.0 32.0 41.0 20-21 37.61875302953028 39.0 36.0 41.0 32.0 41.0 22-23 37.52330529326156 39.0 36.0 41.0 32.0 41.0 24-25 37.351098330639516 39.0 36.0 41.0 31.0 41.0 26-27 37.2207836402326 39.0 36.0 41.0 31.0 41.0 28-29 37.06022489681044 39.0 36.0 41.0 31.0 41.0 30-31 36.92966935031144 39.0 36.0 40.0 30.0 41.0 32-33 36.776810693966844 39.0 35.0 40.0 30.0 41.0 34-35 36.63275474823652 38.0 35.0 40.0 30.0 41.0 36-37 36.48765375164275 38.0 35.0 40.0 30.0 41.0 38-39 36.37297274088029 38.0 35.0 40.0 30.0 41.0 40-41 36.25416328771844 38.0 35.0 40.0 30.0 41.0 42-43 36.10182188842455 38.0 34.5 40.0 29.0 41.0 44-45 35.95369003736166 38.0 34.0 40.0 29.0 41.0 46-47 36.101689109145724 38.0 34.0 40.0 29.0 41.0 48-49 36.249726353941796 38.0 34.5 40.0 29.5 41.0 50-51 36.464382583720564 38.0 35.0 40.0 30.0 41.0 52-53 36.444958930245164 38.0 35.0 40.0 30.0 41.0 54-55 36.351093929419065 38.0 35.0 40.0 29.5 41.0 56-57 36.20404630726845 38.0 34.0 40.0 29.0 41.0 58-59 36.01636420744373 38.0 34.0 40.0 28.5 41.0 60-61 35.84960767337371 38.0 34.0 40.0 28.0 41.0 62-63 35.650651183205326 37.5 34.0 40.0 28.0 41.0 64-65 35.43851127484008 37.0 34.0 40.0 28.0 41.0 66-67 35.19697211230404 37.0 33.0 39.5 28.0 41.0 68-69 34.93007799709836 36.0 33.0 39.0 28.0 41.0 70-71 34.61771165148049 36.0 33.0 39.0 28.0 40.5 72-73 34.35766409555939 35.0 32.5 38.5 27.5 40.0 74-75 33.997318391243624 35.0 32.0 38.0 26.5 40.0 76-77 32.30009059584678 33.5 30.0 36.0 25.5 39.0 78-79 33.32598590644496 35.0 31.5 36.5 26.0 39.0 80-81 33.40765118405291 35.0 32.0 36.0 27.0 39.0 82-83 33.22682516220263 35.0 32.0 36.0 27.0 37.5 84-85 33.02732696747891 35.0 32.0 36.0 27.0 37.0 86-87 32.82853886365851 34.0 32.0 35.0 27.0 37.0 88-89 32.659365863740106 34.0 32.0 35.0 26.0 36.0 90-91 32.55418316024459 34.0 32.0 35.0 26.5 36.0 92-93 32.500713659541475 34.0 32.0 35.0 27.0 36.0 94-95 32.51743440783166 34.0 32.0 35.0 27.0 35.5 96-97 32.590227154601976 34.0 32.0 35.0 27.0 35.0 98-99 32.71530171160678 34.0 32.0 35.0 28.5 35.0 100 31.6924001783139 34.0 30.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 8.0 19 42.0 20 293.0 21 2256.0 22 10295.0 23 33367.0 24 82358.0 25 163650.0 26 273060.0 27 406325.0 28 548238.0 29 689059.0 30 835597.0 31 989936.0 32 1169314.0 33 1396299.0 34 1710279.0 35 2142629.0 36 2830562.0 37 3816378.0 38 3925579.0 39 1701069.0 40 49945.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.81555757878754 21.589478541932998 14.67689186667035 23.918072012609116 2 14.483840083628447 22.467497128942174 41.07611849068483 21.972544296744555 3 17.65860942033452 27.63630750199021 31.268662863099873 23.4364202145754 4 12.392010509769666 19.35990929607251 39.63487050393383 28.613209690223997 5 12.455658868979173 38.692239413547426 36.372729851537144 12.47937186593626 6 28.554575390053778 39.775911520183115 19.191142253877995 12.478370835885118 7 25.07424415974701 33.26068547991422 24.56965037576605 17.09541998457272 8 23.637528950293984 37.63752693067195 21.732283381597178 16.992660737436886 9 25.32994640565 16.357190401484065 21.686165533858468 36.62669765900747 10-11 23.607497828225142 27.179038985345382 29.846915008415326 19.36654817801415 12-13 24.454856764569694 24.825858142513344 29.7686319576369 20.950653135280067 14-15 21.647479757709153 26.11149104688359 27.2174659941873 25.023563201219957 16-17 21.218866149275645 29.125930703439145 27.91662267020921 21.738580477076 18-19 21.237465466211983 28.4758334884462 29.4655059021443 20.821195143197514 20-21 22.065133389186858 27.708889031052276 29.21118669919759 21.014790880563275 22-23 21.812341518087454 27.629542388785143 29.071264071309855 21.48685202181755 24-25 21.617495771387052 27.783501881605705 29.0816076205372 21.517394726470048 26-27 21.61318464091065 27.90359165175876 28.96621392250601 21.517009784824584 28-29 21.56609742139553 28.002025881567395 28.97639467906742 21.455482017969658 30-31 21.80372650341836 27.81819285078624 28.9085727771407 21.469507868654702 32-33 21.633746108473034 27.97419691383648 28.84931167764745 21.542745300043038 34-35 21.745657705368547 28.032481000962722 28.84745134611914 21.374409947549587 36-37 21.756071935809153 28.014485997728823 28.72829291010337 21.501149156358657 38-39 21.653638417525265 28.04011091093616 28.799066106419403 21.507184565119168 40-41 21.852947787009132 27.909995041261325 28.699070607041605 21.537986564687934 42-43 21.753113163104423 28.053343808120772 28.466280987534642 21.727262041240163 44-45 21.828717752774896 28.167892157704312 28.279375972647813 21.72401411687298 46-47 21.85580782454459 28.167114625244423 28.089271252935603 21.887806297275386 48-49 21.8369836271276 28.265957178641415 28.03360047278455 21.863458721446438 50-51 21.853533588378323 28.352433765445845 27.889711554815054 21.90432109136078 52-53 21.889975823804015 28.264730330847183 27.876158474859086 21.96913537048972 54-55 21.89958978812656 28.199822900669297 27.93523820347883 21.965349107725316 56-57 21.95107302112726 28.21704565853253 27.916403687254775 21.91547763308543 58-59 21.924093739739988 28.2509208562697 27.897678801818447 21.92730660217186 60-61 21.9753706758944 28.26823273753225 27.90554595562148 21.850850630951864 62-63 21.87190375202624 28.31933603315506 27.882704345944997 21.926055868873707 64-65 21.84359518488422 28.30186509186391 27.844325856478157 22.01021386677371 66-67 21.922871485167995 28.320582076853672 27.76464555635349 21.991900881624836 68-69 21.854769455262257 28.34232941545413 27.79570110624354 22.007200023040074 70-71 21.867955819792684 28.154185668487248 27.851754538772 22.12610397294807 72-73 21.905966321456074 28.17374795290059 27.83200416813377 22.08828155750956 74-75 21.893077779591394 28.2422067853757 27.802426238490487 22.062289196542423 76-77 21.905448228610076 28.22225099978177 27.76579378391839 22.106506987689762 78-79 21.87454847513924 28.214441181775264 27.787489448648344 22.123520894437153 80-81 21.879035315029856 28.237530758048813 27.78379200114582 22.09964192577551 82-83 21.901679265763594 28.22030836411266 27.88021395606462 21.997798414059126 84-85 21.963491630221323 28.279149554853987 27.80619206736774 21.951166747556947 86-87 21.81108078897843 28.31527946729197 27.88612440059805 21.987515343131548 88-89 21.854499394818607 28.23198772369181 27.872894709204616 22.04061817228497 90-91 21.84531277555535 28.20162549110128 27.978361420565744 21.974700312777628 92-93 21.824933681552274 28.224568701947305 27.979274752309795 21.971222864190626 94-95 21.614340660033857 28.308137879477908 28.091167463918353 21.986353996569886 96-97 21.670840987141602 28.434716076990657 28.18990176503474 21.704541170833 98-99 22.696560187889443 30.439214721958802 28.418320519310246 18.445904570841506 100 21.964526541485537 31.199157963814066 22.174584464931613 24.66173102976878 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5081.0 1 4633.0 2 6772.5 3 9900.5 4 13123.5 5 21336.0 6 28584.0 7 33068.0 8 35217.5 9 33502.0 10 29904.5 11 26366.0 12 27974.0 13 36789.0 14 58300.5 15 88484.0 16 112916.5 17 127253.0 18 132158.5 19 129479.5 20 122740.5 21 115531.0 22 113921.0 23 123313.0 24 144963.5 25 179211.5 26 224082.0 27 272131.5 28 322580.5 29 379811.5 30 436488.0 31 490453.5 32 546922.5 33 600742.5 34 651645.5 35 701813.0 36 751366.5 37 798662.0 38 833226.0 39 856977.5 40 881113.5 41 901968.0 42 918293.0 43 933490.0 44 943202.5 45 954266.5 46 958856.5 47 955375.5 48 947072.5 49 921733.5 50 891224.0 51 859195.0 52 816519.0 53 765683.5 54 711745.5 55 652971.0 56 591349.0 57 528038.0 58 462670.0 59 398489.5 60 331895.0 61 267341.0 62 211702.0 63 164723.0 64 125194.0 65 94966.5 66 73000.0 67 56416.0 68 43538.0 69 32639.0 70 24200.0 71 17842.0 72 13016.0 73 9283.0 74 6643.0 75 4752.0 76 3293.0 77 2246.5 78 1536.0 79 1075.5 80 759.5 81 522.0 82 396.5 83 284.0 84 198.5 85 143.5 86 100.5 87 72.5 88 49.5 89 34.0 90 24.0 91 18.5 92 15.0 93 9.5 94 3.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.10744389215587144 3 1.0098110165025512E-4 4 7.463820556757987E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.01014201499182997 10-11 0.0010405443952656722 12-13 9.154156388729648E-4 14-15 1.2512875639270743E-4 16-17 3.6880054515745343E-4 18-19 4.983197842306068E-4 20-21 1.1855065761806087E-4 22-23 0.0 24-25 0.16534161712246281 26-27 0.0016900643140898158 28-29 0.0016979567619709415 30-31 0.0025240199815165093 32-33 0.002139253668924908 34-35 0.0014062049557674356 36-37 3.558435516033198E-4 38-39 4.4293666021418313E-4 40-41 7.590997761421518E-4 42-43 9.258391915354335E-4 44-45 1.0758543960635266E-4 46-47 0.0 48-49 2.3340468748034294E-6 50-51 0.0 52-53 0.0 54-55 2.1046764667418546E-4 56-57 0.0 58-59 9.735937284402234E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.004054888548290766 70-71 0.006492584766365748 72-73 2.62041295402192E-6 74-75 2.863129145125044E-4 76-77 0.0015529984873687446 78-79 0.009954432628269741 80-81 9.618107015290618E-5 82-83 7.521926415501187E-5 84-85 1.920463821384664E-4 86-87 4.8699236238419434E-5 88-89 4.656022785178704E-5 90-91 0.0 92-93 2.115227757299855E-5 94-95 2.4737595950950295E-5 96-97 6.389265624837273E-6 98-99 3.5289967962002587E-6 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 851.0 20-21 3297.0 22-23 6753.0 24-25 11460.0 26-27 15687.0 28-29 24548.0 30-31 51153.0 32-33 64099.0 34-35 89403.0 36-37 122276.0 38-39 150537.0 40-41 159367.0 42-43 182824.0 44-45 218365.0 46-47 204709.0 48-49 192506.0 50-51 168943.0 52-53 161261.0 54-55 174547.0 56-57 184350.0 58-59 195445.0 60-61 198315.0 62-63 192512.0 64-65 200679.0 66-67 215181.0 68-69 223707.0 70-71 227578.0 72-73 220586.0 74-75 224431.0 76-77 206003.0 78-79 229655.0 80-81 246809.0 82-83 243950.0 84-85 245876.0 86-87 265152.0 88-89 293560.0 90-91 326104.0 92-93 360193.0 94-95 451942.0 96-97 982198.0 98-99 1539586.0 100-101 1.3300141E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.91245059048266 #Duplication Level Percentage of deduplicated Percentage of total 1 88.74156226244602 73.57780396407297 2 7.435933425955279 12.330629255472713 3 2.059297838580822 5.122242908772605 4 0.7816571804423088 2.592364494084757 5 0.3855786480392477 1.5984635302149615 6 0.20113967885381231 1.0006190210851358 7 0.12126855806794694 0.7038271330291411 8 0.07272939683638385 0.4824138017337826 9 0.04479188426219233 0.33424244016692756 >10 0.15158377408337956 1.8806578577702473 >50 0.0031762514451795887 0.17713101484360674 >100 0.0012314485673728247 0.1650268760686936 >500 2.98272017153293E-5 0.017425107068660305 >1k 1.982521834165032E-5 0.017152595615825557 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.390482680445874E-6 2 0.0 8.780965360891749E-6 0.0 0.0 4.390482680445874E-6 3 0.0 8.780965360891749E-6 0.0 0.0 4.390482680445874E-6 4 0.0 4.3904826804458745E-5 0.0 0.0 4.390482680445874E-6 5 0.0 4.3904826804458745E-5 0.0 0.0 4.390482680445874E-6 6 4.829530948490462E-5 4.3904826804458745E-5 0.0 0.0 8.780965360891749E-6 7 4.829530948490462E-5 4.3904826804458745E-5 0.0 0.0 8.780965360891749E-6 8 4.829530948490462E-5 4.3904826804458745E-5 0.0 0.0 8.780965360891749E-6 9 4.829530948490462E-5 1.1854303237203861E-4 0.0 0.0 1.3171448041337624E-5 10-11 4.829530948490462E-5 1.1854303237203861E-4 0.0 0.0 1.3171448041337624E-5 12-13 5.2685792165350495E-5 1.1854303237203861E-4 0.0 0.0 1.536668938156056E-5 14-15 5.2685792165350495E-5 1.5586213515582852E-4 0.0 0.0 2.414765474245231E-5 16-17 1.4927641113515974E-4 1.6025261783627443E-4 0.0 0.0 2.6342896082675248E-5 18-19 1.536668938156056E-4 1.7561930721783498E-4 0.0 0.0 3.5123861443566995E-5 20-21 1.536668938156056E-4 1.887907552591726E-4 0.0 0.0 4.610006814468168E-5 22-23 1.536668938156056E-4 2.2171937536251667E-4 0.0 6.585724020668811E-6 5.488103350557343E-5 24-25 1.536668938156056E-4 2.4586703010496896E-4 0.0 3.951434412401287E-5 6.366199886646518E-5 26-27 1.536668938156056E-4 2.590384781463066E-4 0.0 1.0756682567092393E-4 6.585724020668812E-5 28-29 1.5805737649605148E-4 2.590384781463066E-4 0.0 4.610006814468168E-4 6.585724020668812E-5 30-31 1.5805737649605148E-4 2.9635758093009653E-4 0.0 0.001745216865477235 6.585724020668812E-5 32-33 1.712288245373891E-4 3.051385462909883E-4 0.0 0.005547374866743362 6.585724020668812E-5 34-35 1.8000978989828086E-4 3.49043373095447E-4 0.0 0.010223238921418219 6.585724020668812E-5 36-37 1.8000978989828086E-4 3.9294819989990577E-4 0.0 0.018352217604263754 6.585724020668812E-5 38-39 1.8000978989828086E-4 4.039244066010205E-4 0.0 0.04039683114278249 6.585724020668812E-5 40-41 1.887907552591726E-4 4.456339920652563E-4 0.0 0.06174774841779078 6.585724020668812E-5 42-43 1.9757172062006436E-4 4.54414957426148E-4 0.0 0.07519360162665628 7.463820556757987E-5 44-45 2.063526859809561E-4 5.005150255708297E-4 0.0 0.09386412922525236 9.220013628936337E-5 46-47 2.1513365134184786E-4 5.400293696948426E-4 0.0 0.11524358463768354 9.220013628936337E-5 48-49 2.1952413402229372E-4 5.422246110350655E-4 0.0 0.1329547917706022 9.220013628936337E-5 50-51 2.4367178876474603E-4 6.168628166026455E-4 0.0 0.15118846634249392 9.220013628936337E-5 52-53 2.4586703010496896E-4 6.234485406233142E-4 0.0 0.19332612386807319 1.0098110165025512E-4 54-55 2.4586703010496896E-4 6.30034264643983E-4 0.0 0.24336884545979526 1.0976206701114686E-4 56-57 2.4586703010496896E-4 6.366199886646518E-4 0.0 0.2975210588404147 1.0976206701114686E-4 58-59 2.480622714451919E-4 6.410104713450977E-4 0.0 0.3419220101877638 1.0976206701114686E-4 60-61 2.722099261876442E-4 6.475961953657665E-4 0.0 0.3603971613070801 1.0976206701114686E-4 62-63 3.2050523567254887E-4 6.629628847473271E-4 0.0 0.37871645029124046 1.0976206701114686E-4 64-65 3.227004770127718E-4 7.156486769126775E-4 0.0 0.3858202512682019 1.0976206701114686E-4 66-67 3.292862010334406E-4 7.222344009333464E-4 0.0 0.39140494523772906 1.1415254969159274E-4 68-69 3.292862010334406E-4 7.463820556757987E-4 0.0 0.39713672037705117 1.1854303237203861E-4 70-71 3.336766837138865E-4 7.639439863975822E-4 0.0 0.40205625622049074 1.295192390731533E-4 72-73 3.5782433845633877E-4 7.661392277378051E-4 0.0 0.40618330994010987 1.3610496309382212E-4 74-75 3.600195797965617E-4 7.858963997998115E-4 0.0 0.40944982905436156 1.3610496309382212E-4 76-77 3.709957864976764E-4 8.232155025836014E-4 0.0 0.4125890241708804 1.3610496309382212E-4 78-79 3.775815105183452E-4 8.38582191965162E-4 0.0 0.4147227987535771 1.3610496309382212E-4 80-81 3.775815105183452E-4 8.38582191965162E-4 0.0 0.415480157015954 1.40495445774268E-4 82-83 3.819719931987911E-4 8.429726746456079E-4 0.0 0.4159455481800813 1.4927641113515974E-4 84-85 3.885577172194599E-4 8.473631573260538E-4 0.0 0.41615409610740245 1.4927641113515974E-4 86-87 3.9514344124012867E-4 8.517536400064996E-4 0.0 0.4162858105878158 1.4927641113515974E-4 88 4.039244066010205E-4 8.780965360891749E-4 0.0 0.4163055677598778 1.536668938156056E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 26610 0.0 46.05668 1 GTATCAA 46480 0.0 33.46837 1 ATCAACG 55835 0.0 27.06679 3 TCAACGC 56185 0.0 26.883224 4 CAACGCA 57020 0.0 26.497261 5 AACGCAG 58390 0.0 25.976328 6 TATCAAC 59525 0.0 25.603985 2 ACGCAGA 66890 0.0 22.581657 7 CGCAGAG 67695 0.0 22.306921 8 GTACATG 60875 0.0 20.243044 1 TACATGG 61270 0.0 19.645924 2 ACATGGG 62025 0.0 18.90735 3 GCAGAGT 81085 0.0 18.44195 9 AGAGTAC 72705 0.0 18.17373 10-11 GAGTACT 48540 0.0 17.716293 12-13 CATGGGG 43630 0.0 16.982258 4 CAGAGTA 79510 0.0 16.969578 10-11 AGTACTT 53505 0.0 15.7426195 12-13 GTACTTT 55830 0.0 15.396008 14-15 GTGGTAT 13630 0.0 14.466916 1 >>END_MODULE