##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138606_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5932879 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.969300570599874 31.0 30.0 31.0 26.0 34.0 2 30.647927422757146 31.0 30.0 33.0 27.0 34.0 3 30.854532512798592 31.0 30.0 34.0 27.0 34.0 4 34.72893160302106 35.0 35.0 37.0 32.0 37.0 5 34.42887458180084 35.0 35.0 37.0 30.0 37.0 6 34.551552964420814 35.0 35.0 37.0 30.0 37.0 7 34.380016683299964 35.0 35.0 37.0 30.0 37.0 8 34.372396268321 35.0 35.0 37.0 30.0 37.0 9 35.73799600497499 37.0 35.0 39.0 30.0 39.0 10-11 35.70893625169163 37.0 35.0 39.0 30.0 39.0 12-13 35.655232055128714 37.0 35.0 39.0 30.0 39.0 14-15 36.450210091930074 38.0 35.0 40.0 30.0 41.0 16-17 36.30295359133399 38.0 35.0 40.0 29.5 41.0 18-19 36.5654153742222 38.5 35.0 40.0 30.0 41.0 20-21 36.507858066903836 38.5 35.0 40.0 30.0 41.0 22-23 36.350718265901804 38.0 34.5 40.0 29.5 41.0 24-25 36.38006344523603 38.0 35.0 40.0 30.0 41.0 26-27 36.10734205102893 38.0 34.0 40.0 29.0 41.0 28-29 35.789865553936565 38.0 34.0 40.0 27.0 41.0 30-31 35.854018586011094 38.0 34.0 40.0 27.0 41.0 32-33 35.91971996032402 38.0 34.0 40.0 28.5 41.0 34-35 35.629320216359446 38.0 34.0 40.0 27.0 41.0 36-37 35.45402666282931 38.0 34.0 40.0 26.5 41.0 38-39 35.575961093727564 38.0 34.0 40.0 27.0 41.0 40-41 35.565223262716145 38.0 34.0 40.0 27.0 41.0 42-43 35.55484209166321 38.0 34.0 40.0 27.0 41.0 44-45 35.70112024838596 38.0 34.0 40.0 27.5 41.0 46-47 35.46077995588335 38.0 33.5 40.0 27.0 41.0 48-49 35.293423321459144 38.0 33.0 40.0 26.5 41.0 50-51 35.22445279295974 38.0 33.0 40.0 26.5 41.0 52-53 35.322979631381855 38.0 33.0 40.0 27.0 41.0 54-55 35.35126115693065 38.0 33.0 40.0 27.0 41.0 56-57 35.267197085310556 37.5 33.0 40.0 27.5 41.0 58-59 34.86709616575307 37.0 33.0 40.0 26.0 41.0 60-61 34.362786653623225 37.0 32.0 40.0 25.5 41.0 62-63 34.319153244028776 36.0 32.0 39.0 25.5 41.0 64-65 34.24674285068872 36.0 32.0 39.0 26.0 41.0 66-67 33.95881172140665 36.0 31.5 39.0 26.0 40.0 68-69 33.70271192082946 35.0 31.0 39.0 25.5 40.0 70-71 33.75584012903312 35.0 31.5 38.5 26.0 40.0 72-73 33.54667328509763 35.0 31.0 38.0 26.0 40.0 74-75 33.08736309126168 35.0 31.0 37.0 25.5 39.5 76-77 32.712686601207075 34.5 31.0 37.0 24.5 39.0 78-79 32.624135516503806 34.0 31.0 36.0 25.5 39.0 80-81 32.48320048698415 34.0 31.0 36.0 25.5 38.5 82-83 32.57957746678997 34.0 31.0 36.0 26.0 37.0 84-85 32.16998579634001 34.0 31.0 35.0 25.5 37.0 86-87 32.01877632958111 34.0 31.0 35.0 25.5 36.5 88-89 32.06043204333718 34.0 31.0 35.0 26.0 36.0 90-91 31.86181463196941 34.0 31.0 35.0 25.0 36.0 92-93 31.755352733246074 34.0 31.0 35.0 25.0 36.0 94-95 31.97036346916671 34.0 31.0 35.0 26.0 35.0 96-97 32.14417522462334 34.0 31.0 35.0 26.5 35.0 98-99 32.67809155030701 34.0 32.0 35.0 28.5 35.0 100 32.50628188992249 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 33.0 20 176.0 21 1183.0 22 4886.0 23 14449.0 24 34086.0 25 63961.0 26 104546.0 27 151256.0 28 202048.0 29 251268.0 30 302134.0 31 352838.0 32 405194.0 33 463516.0 34 530875.0 35 600155.0 36 685339.0 37 773026.0 38 702034.0 39 282124.0 40 7747.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.861311346481195 21.935454945229797 14.764147389488308 26.439086318800705 2 14.301363924142382 23.23535698079826 39.00415805041577 23.459121044643584 3 16.79278879005352 27.34976336932151 31.29483282469845 24.562615015926514 4 12.150723132921447 20.752351519881206 38.81445136540272 28.28247398179463 5 12.468741972695872 39.31111993576134 35.69317814833817 12.526959943204611 6 27.910497144632245 40.22713493540469 19.24294198026888 12.619425939694187 7 24.248564651326955 33.89201094443355 24.52536112737172 17.334063276867774 8 23.317987776255002 36.95575116229406 21.740659130246883 17.985601931204055 9 24.16765087157546 17.212087828552658 22.482144834622392 36.138116465249496 10-11 23.07744624417581 27.435675808332626 30.067334153744298 19.41954379374727 12-13 23.8441994181914 24.93517902522536 29.851982486074636 21.368639070508603 14-15 21.046695879015903 26.544094359584953 27.376042895868935 25.03316686553021 16-17 20.556436428250098 29.226325027023137 28.21480094234182 22.002437602384948 18-19 20.68601938451804 28.611792015309934 29.806203699755212 20.895984900416813 20-21 21.39413039973612 27.832852614800778 29.51924886492641 21.253768120536687 22-23 21.015573586261564 27.772235099558284 29.57570943424159 21.636481879938565 24-25 20.959884148277723 27.8319930738618 29.5378961897384 21.670226588122077 26-27 21.14071687548267 27.91871624672154 29.293025310167998 21.647541567627783 28-29 20.925118340517663 27.878513678420543 29.47249920757041 21.723868773491386 30-31 21.48325084700232 27.837281102024264 29.222504723247688 21.456963327725724 32-33 21.298542860615893 28.016632420835975 29.19039225677494 21.494432461773197 34-35 21.256434232725695 27.889393005227696 29.286443452470838 21.567729309575764 36-37 21.290583002002123 27.87712375896529 29.22915666822371 21.603136570808875 38-39 21.232024254367264 27.951557890800053 29.218933064038787 21.597484790793892 40-41 21.42542143490659 27.829687438315194 29.102987071426394 21.641904055351823 42-43 21.327164953894528 28.007845764082095 28.94600563869733 21.718983643326048 44-45 21.51745367949264 28.198712499333052 28.56730702931698 21.71652679185733 46-47 21.456616122417632 28.027807438236085 28.446716609359772 22.068859829986508 48-49 21.499959626899074 28.102859966300493 28.52715184617367 21.87002856062676 50-51 21.424949665838653 28.255521038848585 28.382269261153347 21.937260034159415 52-53 21.57979931415749 28.24245166077035 28.268320047773727 21.909428977298433 54-55 21.564542137363805 28.123564892169224 28.349973519725296 21.961919450741675 56-57 21.65299326977969 28.219945073639895 28.319501283572198 21.807560373008222 58-59 21.50598400126925 28.25578100062221 28.39493907941778 21.843295918690757 60-61 21.50149933939303 28.177893556721035 28.346257168263563 21.974349935622378 62-63 21.523168531934427 28.2905593746955 28.306953394104394 21.879318699265674 64-65 21.39531400027809 28.26369386149435 28.46919612194308 21.87179601628448 66-67 21.50843874360091 28.2683841416041 28.30642384002929 21.916753274765707 68-69 21.383410942956928 28.261263096623978 28.434090027163368 21.921235933255723 70-71 21.454084696205854 28.02308693382481 28.46398364798063 22.05884472198871 72-73 21.461408916497657 28.154390493022085 28.466485350358354 21.9177152401219 74-75 21.214457619935377 28.272741074497294 28.553356732492492 21.959444573074837 76-77 21.393907171926237 28.26306274860975 28.41892753446548 21.92410254499853 78-79 21.41838769517658 28.28964179345077 28.334940057891245 21.95703045348141 80-81 21.397346522528125 28.317928428795184 28.350734033179307 21.93399101549738 82-83 21.480606114316995 28.25990078634814 28.446156351438823 21.813336747896045 84-85 21.498884805913594 28.309312470188207 28.425591106160613 21.766211617737582 86-87 21.371301589305997 28.3044735868505 28.400079312858306 21.9241455109852 88-89 21.405506188468014 28.3017344800102 28.37399212447689 21.918767207044894 90-91 21.309404102911934 28.237925764135912 28.538041343062282 21.91462878988987 92-93 21.307858400428987 28.287888746946933 28.546981994818132 21.857270857805947 94-95 21.109859333117576 28.43188527141518 28.54998396990193 21.908271425565314 96-97 21.140414610078597 28.549206236972335 28.614694783210787 21.69568436973828 98-99 22.15384262458823 30.639321624702404 28.574547531386514 18.632288219322852 100 21.365574235403585 31.492008915701618 22.382477505666067 24.75993934322873 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 463.0 1 476.5 2 1217.5 3 2039.0 4 2548.5 5 4269.0 6 6141.0 7 7437.5 8 8219.5 9 8036.0 10 7075.5 11 5967.5 12 5987.0 13 7636.5 14 12569.0 15 20089.5 16 26348.0 17 30029.5 18 31596.5 19 31638.5 20 30946.5 21 30554.0 22 31402.0 23 34641.0 24 41069.5 25 51147.5 26 64338.5 27 78453.5 28 92803.5 29 107680.0 30 121922.5 31 136024.5 32 150881.0 33 164847.0 34 178437.0 35 191596.0 36 204772.5 37 217435.0 38 224772.0 39 228734.5 40 233465.5 41 237709.5 42 240084.5 43 242330.5 44 243930.0 45 245313.0 46 245507.0 47 243127.0 48 238759.0 49 230374.0 50 220726.0 51 211491.5 52 200106.0 53 186679.5 54 172320.5 55 157355.5 56 143367.0 57 128434.0 58 112792.5 59 98009.5 60 81746.0 61 65748.0 62 52125.0 63 40498.5 64 30579.5 65 22585.0 66 16916.5 67 13020.5 68 10053.5 69 7548.5 70 5643.5 71 4200.0 72 3005.0 73 2151.5 74 1547.0 75 1107.0 76 785.5 77 543.5 78 361.5 79 241.0 80 166.0 81 114.0 82 79.0 83 56.0 84 40.5 85 27.5 86 22.0 87 18.0 88 16.0 89 12.0 90 5.5 91 2.0 92 1.0 93 1.5 94 2.0 95 2.5 96 3.0 97 2.5 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004904869962795466 3 8.427611619923481E-5 4 2.3597312535785745E-4 5 5.056566971954088E-5 6 3.033940183172453E-4 7 0.0 8 0.0 9 3.371044647969392E-5 10-11 0.001348417859187757 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0376922879825658 22-23 0.0 24-25 1.433806388231587E-4 26-27 0.005073392403603645 28-29 0.0 30-31 2.539038564271868E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 6.868585921287722E-5 40-41 0.0022200637788906312 42-43 1.304205724367597E-4 44-45 8.147895696421672E-4 46-47 0.002324273233784328 48-49 0.007993769671958686 50-51 0.006852970461811171 52-53 0.009029142779698506 54-55 0.010937299198022537 56-57 0.012154762930674119 58-59 0.013917577548334394 60-61 0.015407113337081649 62-63 0.01317573506831765 64-65 0.03783509795646709 66-67 0.005867430450542795 68-69 0.004530256535719618 70-71 0.0030585575548479262 72-73 9.611363048827408E-4 74-75 2.1030357320792566E-4 76-77 8.098443054076746E-5 78-79 0.0 80-81 0.0 82-83 7.358965943336383E-5 84-85 6.395374183217451E-5 86-87 5.405726242562937E-5 88-89 1.0983072888064916E-5 90-91 4.478499451887648E-5 92-93 0.003209295398624183 94-95 2.334196480288469E-5 96-97 3.4872589387164747E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 369.0 20-21 1278.0 22-23 2165.0 24-25 4623.0 26-27 5647.0 28-29 7907.0 30-31 12883.0 32-33 15922.0 34-35 21689.0 36-37 28284.0 38-39 35044.0 40-41 36545.0 42-43 41648.0 44-45 48801.0 46-47 48099.0 48-49 44682.0 50-51 40725.0 52-53 40275.0 54-55 42809.0 56-57 45975.0 58-59 47421.0 60-61 47398.0 62-63 45233.0 64-65 47994.0 66-67 52020.0 68-69 53332.0 70-71 54737.0 72-73 53479.0 74-75 53249.0 76-77 55413.0 78-79 62516.0 80-81 62373.0 82-83 65598.0 84-85 65907.0 86-87 68661.0 88-89 85763.0 90-91 86406.0 92-93 90777.0 94-95 110222.0 96-97 244229.0 98-99 541477.0 100-101 3413304.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 91.2694399029393 #Duplication Level Percentage of deduplicated Percentage of total 1 93.5971018783146 85.42555064972123 2 4.7572290068370435 8.683792538880665 3 1.0346845161492564 2.8330522879555917 4 0.3165256448091638 1.1555647326659635 5 0.13515427160878732 0.6167727335111876 6 0.06277407969882402 0.3437613056720485 7 0.03276224264775791 0.20931340754975386 8 0.017795296501367477 0.1299333395669236 9 0.012418879950216226 0.10201177955502701 >10 0.03308366867662925 0.43358498360052766 >50 3.042102586051394E-4 0.01917561938332554 >100 1.663045477714672E-4 0.04748662193776414 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.685522323984696E-5 3.371044647969392E-5 2 0.0 1.685522323984696E-5 0.0 3.371044647969392E-5 3.371044647969392E-5 3 0.0 1.685522323984696E-5 0.0 3.371044647969392E-5 3.371044647969392E-5 4 0.0 5.0565669719540887E-5 0.0 5.0565669719540887E-5 5.0565669719540887E-5 5 0.0 5.0565669719540887E-5 0.0 5.0565669719540887E-5 6.742089295938784E-5 6 0.0 5.0565669719540887E-5 0.0 6.742089295938784E-5 8.427611619923481E-5 7 0.0 5.0565669719540887E-5 0.0 6.742089295938784E-5 1.0113133943908177E-4 8 1.685522323984696E-5 6.742089295938784E-5 0.0 8.427611619923481E-5 1.0113133943908177E-4 9 1.685522323984696E-5 2.0226267887816355E-4 0.0 1.6855223239846962E-4 1.0113133943908177E-4 10-11 3.371044647969392E-5 2.0226267887816355E-4 0.0 1.8540745563831658E-4 1.0113133943908177E-4 12-13 3.371044647969392E-5 2.0226267887816355E-4 0.0 1.9383506725824005E-4 1.0113133943908177E-4 14-15 5.0565669719540887E-5 3.033940183172453E-4 0.0 2.0226267887816355E-4 1.0955895105900526E-4 16-17 5.899328133946436E-5 3.033940183172453E-4 0.0 2.0226267887816355E-4 1.1798656267892872E-4 18-19 6.742089295938784E-5 3.118216299371688E-4 0.0 2.0226267887816355E-4 1.1798656267892872E-4 20-21 9.270372781915829E-5 3.2024924155709224E-4 0.0 2.191179021180105E-4 1.348417859187757E-4 22-23 1.1798656267892872E-4 3.6238729965670964E-4 0.0 2.3597312535785745E-4 1.4326939753869918E-4 24-25 1.264141742988522E-4 3.960977461364036E-4 0.0 2.5282834859770444E-4 1.5169700915862265E-4 26-27 1.348417859187757E-4 4.045253577563271E-4 0.0 2.9496640669732184E-4 1.5169700915862265E-4 28-29 1.348417859187757E-4 4.1295296937625056E-4 0.0 5.309395320551792E-4 1.6855223239846962E-4 30-31 1.5169700915862265E-4 4.3823580423602097E-4 0.0 0.0013399902475678335 1.6855223239846962E-4 32-33 2.1911790211801048E-4 4.3823580423602097E-4 0.0 0.0035648797152276323 1.6855223239846962E-4 34-35 2.612559602176279E-4 5.477947552950263E-4 0.0 0.006169011705783988 1.8540745563831658E-4 36-37 2.8653879507739837E-4 6.404984831141845E-4 0.0 0.010669356310823126 1.8540745563831658E-4 38-39 3.033940183172453E-4 6.404984831141845E-4 0.0 0.01891156047510829 1.8540745563831658E-4 40-41 3.2024924155709224E-4 7.500574341731897E-4 0.0 0.02873815562393907 1.8540745563831658E-4 42-43 3.2024924155709224E-4 8.259059387525011E-4 0.0 0.03644099264454913 1.8540745563831658E-4 44-45 3.371044647969392E-4 9.354648898115064E-4 0.0 0.046385574356058834 1.8540745563831658E-4 46-47 3.5395968803678617E-4 9.944581711509707E-4 0.0 0.056422859795387706 2.0226267887816355E-4 48-49 3.5395968803678617E-4 9.944581711509707E-4 0.0 0.0663337310604177 2.0226267887816355E-4 50-51 3.5395968803678617E-4 0.0012220036848889049 0.0 0.07649743067404544 2.0226267887816355E-4 52-53 3.6238729965670964E-4 0.0012304312965088283 0.0 0.08677068923873216 2.1069029049808702E-4 54-55 3.7081491127663316E-4 0.0012472865197486753 0.0 0.09785299851893153 2.1911790211801048E-4 56-57 3.7081491127663316E-4 0.001280996966228369 0.0 0.1065671489339324 2.1911790211801048E-4 58-59 3.876701345164801E-4 0.001297852189468216 0.0 0.1149610501073762 2.1911790211801048E-4 60-61 4.1295296937625056E-4 0.00133156263594791 0.0 0.12458538257732882 2.1911790211801048E-4 62-63 4.2138058099617403E-4 0.0013737006940475272 0.0 0.13506933143251362 2.1911790211801048E-4 64-65 4.719462507157149E-4 0.0014664044218666856 0.0 0.1441880072052708 2.1911790211801048E-4 66-67 4.719462507157149E-4 0.0014664044218666856 0.0 0.15050028830859352 2.1911790211801048E-4 68-69 5.140843088153324E-4 0.00152539770320615 0.0 0.15731822610911161 2.2754551373793398E-4 70-71 5.393671436751028E-4 0.001559108149685844 0.0 0.16307428484551934 2.5282834859770444E-4 72-73 5.393671436751028E-4 0.0015759633729256909 0.0 0.1686533637379087 2.5282834859770444E-4 74-75 5.562223669149497E-4 0.001668667100744849 0.0 0.1730694322267486 2.5282834859770444E-4 76-77 5.562223669149497E-4 0.0017445156053241605 0.0 0.176878712678954 2.5282834859770444E-4 78-79 5.562223669149497E-4 0.001786653663423778 0.0 0.17878335290505673 2.5282834859770444E-4 80-81 5.562223669149497E-4 0.0017950812750437014 0.0 0.17923844393253258 2.612559602176279E-4 82-83 5.562223669149497E-4 0.0018119364982835482 0.0 0.1797525282413479 2.696835718375514E-4 84-85 5.562223669149497E-4 0.0018203641099034718 0.0 0.18011491554100462 2.696835718375514E-4 86-87 5.562223669149497E-4 0.0018793573912429362 0.0 0.18023290210368356 2.696835718375514E-4 88 5.562223669149497E-4 0.0019552058958222473 0.0 0.18023290210368356 2.696835718375514E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5890 0.0 48.191578 1 GTATCAA 10655 0.0 35.930153 1 ATCAACG 13585 0.0 27.120905 3 TCAACGC 13825 0.0 26.681585 4 CAACGCA 13930 0.0 26.480469 5 TATCAAC 14850 0.0 25.409864 2 AACGCAG 14430 0.0 25.29908 6 ACGCAGA 16470 0.0 22.19118 7 CGCAGAG 16560 0.0 21.508595 8 GTACATG 12855 0.0 19.941807 1 TACATGG 12845 0.0 19.134007 2 AGAGTAC 17645 0.0 18.627401 10-11 ACATGGG 12865 0.0 18.412971 3 GCAGAGT 19320 0.0 18.107508 9 CAGAGTA 19355 0.0 17.134964 9 GAGTACT 13025 0.0 16.88773 12-13 AGTACTT 14460 0.0 16.455074 12-13 CATGGGG 9650 0.0 16.219397 4 GTGGTAT 2895 0.0 15.927289 1 TATACCG 515 1.8189894E-12 14.785145 5 >>END_MODULE