##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138605_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9853934 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.15914689503705 33.0 31.0 34.0 30.0 34.0 2 32.302860969030235 34.0 31.0 34.0 30.0 34.0 3 33.05091956166948 34.0 31.0 34.0 30.0 37.0 4 35.86600021879586 37.0 35.0 37.0 35.0 37.0 5 35.77672643230612 37.0 35.0 37.0 35.0 37.0 6 35.78107281822671 37.0 35.0 37.0 33.0 37.0 7 35.74731919251742 37.0 35.0 37.0 33.0 37.0 8 36.013813975210304 37.0 35.0 37.0 33.0 39.0 9 37.23973318676581 39.0 37.0 39.0 33.0 39.0 10-11 37.178914482276824 39.0 37.0 39.0 33.0 39.0 12-13 37.29542454820583 39.0 37.0 39.0 33.0 39.5 14-15 38.32084099609354 40.0 38.0 41.0 33.0 41.0 16-17 38.321704356858895 40.0 38.0 41.0 33.0 41.0 18-19 38.36266799635557 40.0 38.0 41.0 33.5 41.0 20-21 38.33586879648313 40.0 38.0 41.0 34.0 41.0 22-23 38.254578062480334 40.0 38.0 41.0 33.0 41.0 24-25 38.164198235796256 40.0 37.5 41.0 33.0 41.0 26-27 37.99858712424864 40.0 37.0 41.0 33.0 41.0 28-29 37.907959990581375 40.0 37.0 41.0 33.0 41.0 30-31 37.80953834400094 40.0 37.0 41.0 33.0 41.0 32-33 37.95759416113694 40.0 37.0 41.0 33.0 41.0 34-35 37.94046985069055 40.0 37.0 41.0 33.0 41.0 36-37 37.840737195671274 40.0 37.0 41.0 33.0 41.0 38-39 37.69693301223403 40.0 37.0 41.0 32.5 41.0 40-41 37.712578713641136 40.0 37.0 41.0 33.0 41.0 42-43 37.683043639652794 40.0 37.0 41.0 32.5 41.0 44-45 37.67576975244495 40.0 37.0 41.0 32.5 41.0 46-47 37.68430125646917 40.0 37.0 41.0 32.5 41.0 48-49 37.60723010654559 40.0 36.5 41.0 32.0 41.0 50-51 37.51412875441611 40.0 36.0 41.0 32.0 41.0 52-53 37.386183449110064 39.0 36.0 41.0 31.5 41.0 54-55 37.2782600235304 39.0 36.0 41.0 31.0 41.0 56-57 37.13556601315999 39.0 35.5 41.0 31.0 41.0 58-59 36.99196900495198 39.0 35.0 40.0 31.0 41.0 60-61 36.78875908752926 38.5 35.0 40.0 31.0 41.0 62-63 36.561623402989284 38.0 35.0 40.0 31.0 41.0 64-65 36.35713964046781 38.0 35.0 40.0 30.5 41.0 66-67 36.08039253776026 37.0 34.5 40.0 30.0 41.0 68-69 35.81229118091497 37.0 34.0 40.0 30.0 41.0 70-71 35.54447894830459 36.5 34.0 39.0 30.0 41.0 72-73 35.252182567162905 36.0 34.0 39.0 29.0 40.0 74-75 34.81444877316892 35.5 33.5 38.5 29.0 40.0 76-77 33.98570223653681 35.0 32.5 37.0 28.5 39.0 78-79 34.25735194132659 35.0 33.0 37.0 29.0 39.0 80-81 34.130793333641066 35.0 33.0 37.0 29.0 39.0 82-83 33.90775088696867 35.0 33.0 36.0 29.0 38.5 84-85 33.6866499775238 35.0 33.0 36.0 29.0 37.0 86-87 33.474154861480244 35.0 33.0 35.5 29.0 37.0 88-89 33.26893409376926 35.0 33.0 35.0 29.0 36.5 90-91 33.161423946454065 35.0 33.0 35.0 29.0 36.0 92-93 33.08817903217959 35.0 33.0 35.0 29.0 36.0 94-95 33.03319595030193 34.0 33.0 35.0 29.0 36.0 96-97 32.977773582155834 34.0 32.5 35.0 29.0 35.0 98-99 33.082711131717915 34.0 33.0 35.0 29.0 35.0 100-101 32.509122374435364 34.0 31.5 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 1.0 19 14.0 20 80.0 21 442.0 22 2101.0 23 7117.0 24 17885.0 25 37186.0 26 65411.0 27 100309.0 28 141617.0 29 185238.0 30 232997.0 31 287406.0 32 353607.0 33 445306.0 34 589802.0 35 798384.0 36 1196860.0 37 1929952.0 38 2276816.0 39 1126162.0 40 59239.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.77531097433008 0.010341116808140722 27.524906970541924 30.689440938319855 2 13.896385427479958 26.217288404370002 37.68057360977336 22.205752558376677 3 15.140255222054066 26.181891507438305 34.63342388604586 24.044429384461772 4 12.33746846690875 25.176218959859074 38.22382004994147 24.2624925232907 5 16.276382610234656 38.01435041070906 32.90555832827782 12.80370865077846 6 26.378946723207196 38.811433078403 21.340674699059278 13.46894549933052 7 24.491751213271776 33.73750016998287 23.927093483678703 17.84365513306665 8 23.541978259647365 32.550583350771376 22.916339809054943 20.991098580526316 9 23.19405630279237 20.702909112238828 24.678793261655702 31.424241323313108 10-11 24.2393951491861 26.339490400483704 29.674985645327034 19.74612880500316 12-13 24.255906321272295 24.631208205778524 29.414947370258414 21.697938102690763 14-15 21.774487315141712 27.10315631823576 27.0887356810354 24.03362068558713 16-17 20.956368386105325 29.13386462035007 28.294869672850425 21.614897320694183 18-19 20.987011097065363 28.522155897178497 29.701819424702563 20.789013581053574 20-21 21.867019943471583 27.901120586866835 29.35952408511506 20.872335384546528 22-23 21.6568275922549 27.65116043967376 29.181638766677214 21.510373201394124 24-25 21.41473108760321 27.992504249154017 29.306286169081737 21.28647849416104 26-27 21.40651049698075 28.17499281807983 29.04633648931489 21.372160195624534 28-29 21.313069758669997 28.10193747741344 29.087820495326515 21.49717226859004 30-31 21.615305523729045 28.02420654867868 29.181864804443858 21.178623123148416 32-33 21.55787710243878 28.190021542807848 28.922772885343594 21.329328469409774 34-35 21.512778823867997 28.17037319663724 29.085142077792405 21.231705901702362 36-37 21.603419518730703 28.254403205011698 28.929583857069662 21.212593419187936 38-39 21.365337713277693 28.335401366077328 29.094695769222977 21.204565151422 40-41 21.6016467072899 27.984792640435334 28.917476252525038 21.496084399749726 42-43 21.59042067704205 28.096333350545134 28.79967895613631 21.513567016276507 44-45 21.54385386576654 28.490024014874855 28.487460885747378 21.47866123361123 46-47 21.67898862074463 28.244780197814435 28.219983814783028 21.856247366657904 48-49 21.628951033924864 28.393351808058053 28.319148061234777 21.658549096782306 50-51 21.647307424804534 28.533287294343957 27.97351642146638 21.84588885938513 52-53 21.71075060455701 28.35110167156259 28.019147322903216 21.919000400977183 54-55 21.58948087020786 28.393056910014813 28.159091015428917 21.85837120434841 56-57 21.84712988829173 28.5609951475699 27.866016450784343 21.725858513354027 58-59 21.77709491345521 28.428524061665573 28.067555600214284 21.726825424664934 60-61 21.827329399998842 28.439642188847046 27.98852641161748 21.74450199953663 62-63 21.8177921273329 28.582149216383634 27.882169140014362 21.717889516269107 64-65 21.70691206728656 28.35566473891828 27.911806610956173 22.025616582838982 66-67 21.79380560772485 28.462274486369587 27.863780044770742 21.880139861134825 68-69 21.736224810507228 28.407316783272226 28.00732412346736 21.84913428275319 70-71 21.789583651694866 28.07552411461913 28.055387684539944 22.07950454914606 72-73 21.797704642366035 28.311284003677585 27.979736439831154 21.911274914125226 74-75 21.655257019500716 28.374781884748156 28.106752468555456 21.863208627195668 76-77 21.898882790065368 28.22163675584281 27.841080814836243 22.038399639255577 78-79 21.632440043541614 28.293525333375435 28.032476814166568 22.04155780891638 80-81 21.727814455559667 28.295762044293877 28.083415443998057 21.8930080561484 82-83 21.904804903248266 28.073235956717724 28.16503772509591 21.856921414938103 84-85 21.947184672989078 28.19526388231769 28.027209206053733 21.830342238639496 86-87 21.703022051294536 28.374779068089328 28.027024406108257 21.89517447450788 88-89 21.84089439548487 28.026365111802846 28.08565827772608 22.047082214986204 90-91 21.840955226366578 28.121277105172755 28.146615171609707 21.89115249685096 92-93 21.810491449560207 28.111634636914467 28.116030858934142 21.96184305459118 94-95 21.73673730741545 28.044137107773064 28.188521204665324 22.030604380146162 96-97 21.494046794396407 28.276930189209033 28.356135865405914 21.872887150988646 98-99 21.897294573569802 29.236417758604006 28.2241654961429 20.64212217168329 100-101 22.31734013800421 31.199651090070326 25.13060527229529 21.352403499630178 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1143.0 1 1211.5 2 2532.5 3 4045.5 4 5665.0 5 9049.0 6 11580.5 7 13117.0 8 13826.5 9 13134.5 10 11889.0 11 10829.5 12 12084.5 13 16172.0 14 25814.0 15 40159.5 16 52121.0 17 57756.0 18 57657.0 19 54813.5 20 51177.5 21 48754.5 22 49893.5 23 56399.0 24 67964.0 25 84916.5 26 107565.5 27 131206.5 28 154129.5 29 179676.0 30 205195.0 31 229474.0 32 252897.0 33 274852.0 34 297767.0 35 318682.0 36 339067.5 37 360895.0 38 375438.0 39 381275.5 40 384783.0 41 387214.0 42 389712.0 43 393787.5 44 398358.0 45 403607.5 46 407133.0 47 409025.0 48 407387.0 49 396874.0 50 381920.5 51 366042.5 52 345881.0 53 322373.5 54 300409.5 55 277694.5 56 254784.5 57 228955.0 58 201448.5 59 175117.5 60 144214.5 61 113725.5 62 89844.5 63 69674.0 64 50908.0 65 37022.5 66 27792.5 67 21050.5 68 15922.0 69 11520.0 70 8207.0 71 5929.5 72 4163.0 73 2836.0 74 1936.5 75 1286.0 76 855.0 77 576.5 78 395.5 79 276.0 80 190.0 81 131.0 82 96.5 83 71.5 84 54.5 85 41.5 86 31.5 87 24.0 88 19.0 89 16.0 90 15.5 91 15.0 92 14.5 93 11.5 94 6.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 6.69783256108677E-4 2 0.001288825356451545 3 5.0741155765808855E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 5.074115576580887E-6 16-17 1.0148231153161773E-5 18-19 2.283352009461399E-4 20-21 0.002334194904970105 22-23 6.698956992696106E-4 24-25 0.0031320998917521914 26-27 0.010522894405395522 28-29 3.9131667286505497E-4 30-31 0.0028550164624015196 32-33 0.0030504868842326964 34-35 0.0037968938133657827 36-37 0.06192769580334335 38-39 0.02564679848420327 40-41 0.02291380787523369 42-43 0.003296774539898833 44-45 0.001820160018067874 46-47 0.004000294498892599 48-49 0.002530101709005147 50-51 8.04144132168473E-4 52-53 0.0013523964935063717 54-55 0.002562173935516989 56-57 0.01343716415878037 58-59 0.008086794548648036 60-61 0.004739170965621308 62-63 0.0028444934032714926 64-65 0.0011435581901051135 66-67 7.232508918217042E-4 68-69 0.0015351806433870113 70-71 2.4275323926888065E-4 72-73 5.343154255573632E-4 74-75 0.0010562746473145553 76-77 0.004281518989888448 78-79 0.0010885921778476966 80-81 7.80822282009261E-4 82-83 9.160463179191092E-4 84-85 0.002831780374807023 86-87 0.01194211142178233 88-89 0.032039722156771575 90-91 3.955804091092591E-4 92-93 5.300882695918681E-4 94-95 0.0018678712585240556 96-97 0.015126136571383364 98-99 1.804927514895753E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 265.0 20-21 951.0 22-23 2024.0 24-25 4218.0 26-27 5761.0 28-29 10927.0 30-31 21704.0 32-33 27965.0 34-35 40899.0 36-37 64617.0 38-39 72720.0 40-41 73001.0 42-43 83292.0 44-45 96575.0 46-47 96854.0 48-49 90881.0 50-51 83290.0 52-53 80502.0 54-55 85175.0 56-57 90852.0 58-59 93494.0 60-61 92613.0 62-63 87497.0 64-65 89455.0 66-67 96422.0 68-69 98034.0 70-71 99199.0 72-73 94100.0 74-75 94386.0 76-77 96354.0 78-79 104473.0 80-81 107918.0 82-83 102970.0 84-85 102046.0 86-87 108360.0 88-89 118050.0 90-91 128881.0 92-93 135404.0 94-95 169698.0 96-97 259452.0 98-99 940509.0 100-101 5602146.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.32830485621024 #Duplication Level Percentage of deduplicated Percentage of total 1 87.94936566522507 71.52772822731734 2 7.65771108095131 12.455773225847745 3 2.2671606159295203 5.531529891909281 4 0.9434417220719344 3.0691406394693694 5 0.45478417772775187 1.8493413125011748 6 0.24030919645877577 1.172636375361014 7 0.14039619998448494 0.7992729467094154 8 0.09344993851751882 0.6080100070837497 9 0.0653274381678591 0.4781672826111782 >10 0.18373827964411776 2.180167250165241 >50 0.0033709397229946406 0.18374640311578253 >100 8.752710211129709E-4 0.11295809301273396 >500 6.947457746034107E-5 0.0315283448959543 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.133408037845596E-5 0.0 0.0 0.0 3 0.0 9.133408037845596E-5 0.0 2.0296462306323547E-5 0.0 4 0.0 9.133408037845596E-5 0.0 2.0296462306323547E-5 0.0 5 0.0 9.133408037845596E-5 0.0 2.0296462306323547E-5 0.0 6 0.0 9.133408037845596E-5 0.0 2.0296462306323547E-5 0.0 7 0.0 9.133408037845596E-5 0.0 2.0296462306323547E-5 0.0 8 0.0 9.133408037845596E-5 0.0 3.044469345948532E-5 0.0 9 0.0 1.9281639191007368E-4 0.0 5.074115576580886E-5 0.0 10-11 0.0 2.0296462306323545E-4 0.0 6.088938691897064E-5 0.0 12-13 0.0 2.0296462306323545E-4 0.0 6.088938691897064E-5 0.0 14-15 0.0 3.0952105017143406E-4 0.0 7.10376180721324E-5 0.0 16-17 0.0 3.348916280543385E-4 0.0 8.625996480187507E-5 0.0 18-19 0.0 3.348916280543385E-4 0.0 9.133408037845596E-5 0.0 20-21 0.0 3.450398592075003E-4 0.0 1.2177877383794127E-4 0.0 22-23 0.0 4.769668641986033E-4 0.0 1.420752361442648E-4 0.0 24-25 0.0 5.175597888112504E-4 0.0 1.5222346729742658E-4 0.0 26-27 0.0 5.37856251117574E-4 0.0 2.0296462306323548E-4 0.0 28-29 0.0 5.480044822707358E-4 0.0 5.074115576580887E-4 0.0 30-31 0.0 5.987456380365446E-4 0.0 0.001476567632785038 0.0 32-33 0.0 5.987456380365446E-4 0.0 0.003394583320732613 0.0 34-35 0.0 6.64709140532096E-4 0.0 0.005891048184410409 0.0 36-37 0.0 7.154502962979049E-4 0.0 0.010051822957206736 0.0 38-39 0.0 7.357467586042285E-4 0.0 0.016627876744455566 0.0 40-41 0.0 9.031925726313977E-4 0.0 0.02390415848127256 0.0 42-43 0.0 0.0010351195776225008 0.0 0.030652732198125136 0.0 44-45 0.0 0.001156898351460442 0.0 0.038507463110672345 0.0 46-47 0.0 0.001156898351460442 0.0 0.047209571324508565 0.0 48-49 0.0 0.0011670465826136038 0.0 0.056074051236795375 0.0 50-51 0.0 0.0012786771252983834 0.0 0.06449200897834306 0.0 52-53 0.0 0.0012786771252983834 0.0 0.0731383019208369 0.0 54-55 0.0 0.0012888253564515453 0.0 0.08185055836582628 0.0 56-57 0.0 0.001298973587604707 0.0 0.09033447960986953 0.0 58-59 0.0 0.001304047703181288 0.0 0.09828561871837177 0.0 60-61 0.0 0.0013192700499110306 0.0 0.10604394143496396 0.0 62-63 1.0148231153161773E-5 0.0013497147433705159 0.0 0.11329485259389803 0.0 64-65 1.0148231153161773E-5 0.001517160557397685 0.0 0.12091617418992252 0.0 66-67 1.0148231153161773E-5 0.0015425311352805894 0.0 0.12924787196666832 0.0 68-69 1.0148231153161773E-5 0.001567901713163494 0.0 0.1373106416178554 0.0 70-71 1.0148231153161773E-5 0.0015831240598932366 0.0 0.14509433491233042 0.0 72-73 1.0148231153161773E-5 0.00160342052219956 0.0 0.1511325324484617 0.0 74-75 1.0148231153161773E-5 0.0016693840246951117 0.0 0.1565516878842501 0.0 76-77 1.0148231153161773E-5 0.0017759404518033102 0.0 0.1612959859483532 0.0 78-79 1.0148231153161773E-5 0.001826681607569119 0.0 0.1656242065351767 0.0 80-81 1.0148231153161773E-5 0.0018469780698754427 0.0 0.16808007847424186 0.0 82-83 1.0148231153161773E-5 0.0018571263010286043 0.0 0.17005898354910842 0.0 84-85 1.0148231153161773E-5 0.001877422763334928 0.0 0.17142392063920867 0.0 86-87 1.0148231153161773E-5 0.0018977192256412515 0.0 0.17164210760900164 0.0 88-89 1.0148231153161773E-5 0.0019484603814070604 0.0 0.17169792288034402 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12465 0.0 43.88351 1 GTATCAA 21195 0.0 32.89921 1 ATCAACG 24615 0.0 27.150864 3 CAACGCA 25930 0.0 25.70906 5 ACGCAGA 26055 0.0 25.617945 7 AACGCAG 26345 0.0 25.335949 6 TCAACGC 26440 0.0 25.292545 4 TATCAAC 27570 0.0 24.804552 2 CGCAGAG 30585 0.0 21.823624 8 GTACATG 27800 0.0 20.386292 1 ACATGGG 26640 0.0 20.028654 3 TACATGG 27775 0.0 19.8453 2 GCAGAGT 35790 0.0 18.426918 9 AGAGTAC 32960 0.0 18.181393 10-11 GAGTACT 20580 0.0 18.011744 12-13 CATGGGG 20655 0.0 17.173933 4 CAGAGTA 35770 0.0 16.77658 10-11 AGTACTT 23600 0.0 15.769111 12-13 GTACTTT 24080 0.0 15.333596 14-15 ATGGGGG 13705 0.0 15.315431 5 >>END_MODULE