SRR2132790_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2132790_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2024532
Sequences flagged as poor quality	0
Sequence length	100
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	169222	8.358573734571744	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	25005	1.2351002602082852	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGAACGAGTGGAATCACTGCTG	14896	0.7357749840456955	No Hit
TACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	13738	0.6785765796737221	No Hit
AACGTGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	5572	0.27522410117498763	No Hit
AATGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	4626	0.22849725269840143	No Hit
ACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	4202	0.20755414090762705	No Hit
ATCGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	3951	0.1951562138805413	No Hit
AACGAGTGGAATCACTGCTGAGTACATGGGGGTTAAGCGACTAAGCGTAC	2844	0.14047691021925068	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2302	0.11370529090179854	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGAGT	3465	89.39373	1
AACGTGT	1615	75.20238	1
ATCGAGT	1090	74.714355	1
CGTGTGG	1830	73.97627	3
GTGGAAT	59305	71.090126	6
TGGAATC	59555	70.750496	7
AACGAGT	50260	70.66774	1
ACGAGTG	54860	70.53274	2
ACGTGTG	1775	70.44939	2
TCGAGTG	1210	70.32134	2
GAATCAC	59985	70.19457	9
GGAATCA	60065	70.12455	8
CGAGTGG	56880	70.120224	3
AGTGGAA	58520	69.70367	5
GAGTGGA	59240	68.93584	4
AGCGAGT	680	60.22749	1
GCGAGTG	725	58.357735	2
ATGAGTG	2030	52.56828	2
GTGTGGA	2755	51.525906	4
TGAGTGG	2300	50.275723	3