Basic Statistics
Measure | Value |
---|---|
Filename | SRR2132786_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1594961 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 35 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 163053 | 10.223008587670796 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 139989 | 8.7769544208291 | No Hit |
TACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 12684 | 0.795254554813566 | No Hit |
AACGAGTGGAATCACTGCTGAGTACATGGGAACGAGTGGAATCACTGCTG | 11774 | 0.7381998682099437 | No Hit |
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 11075 | 0.6943743452034251 | No Hit |
AACGTGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 5396 | 0.33831548232213826 | No Hit |
AACGAGTGGAATCACTGCTGAGTACATGGGGGTTAAGCGACTAAGCGTAC | 4933 | 0.3092865593578777 | No Hit |
AATGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 4505 | 0.2824520474168334 | No Hit |
ACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 3988 | 0.2500374617310392 | No Hit |
ATCGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 3799 | 0.23818764220567148 | No Hit |
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 3345 | 0.20972299636166652 | No Hit |
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3135 | 0.19655653022236907 | No Hit |
AACGAGTGGAATCACTGCTGAGTACATGGGGGAACAAGCGAATAAGTGCA | 2998 | 0.18796697850292263 | No Hit |
AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2790 | 0.17492590727923754 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2775 | 0.17398544541214486 | No Hit |
AAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2043 | 0.12809090629802233 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACGAGT | 2715 | 0.0 | 88.25237 | 1 |
AACGTGT | 1370 | 0.0 | 84.87012 | 1 |
CGTGTGG | 1575 | 0.0 | 79.688545 | 3 |
ACGTGTG | 1555 | 0.0 | 78.602325 | 2 |
TCGAGTG | 1055 | 0.0 | 74.85991 | 2 |
AACGAGT | 44170 | 0.0 | 73.109726 | 1 |
ATCGAGT | 1050 | 0.0 | 73.07633 | 1 |
GTGGAAT | 52345 | 0.0 | 73.06358 | 6 |
ACGAGTG | 47975 | 0.0 | 72.413895 | 2 |
TGGAATC | 52855 | 0.0 | 72.33608 | 7 |
CGAGTGG | 49755 | 0.0 | 71.94463 | 3 |
AGCGAGT | 465 | 0.0 | 71.875984 | 1 |
GAATCAC | 53475 | 0.0 | 71.47104 | 9 |
AGTGGAA | 51635 | 0.0 | 71.327995 | 5 |
GGAATCA | 53625 | 0.0 | 71.23606 | 8 |
GAGTGGA | 51765 | 0.0 | 71.203354 | 4 |
AATGAGT | 1560 | 0.0 | 65.178986 | 1 |
ATGAGTG | 1760 | 0.0 | 61.96804 | 2 |
TGAGTGG | 1870 | 0.0 | 61.838467 | 3 |
GTGTGGA | 2350 | 0.0 | 58.209026 | 4 |