Basic Statistics
Measure | Value |
---|---|
Filename | SRR2132761_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2110702 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 158705 | 7.519062378298784 | No Hit |
AACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 154043 | 7.298187996221163 | No Hit |
AACGAGTGGAATCACTGCTGAGTACATGGGAACGAGTGGAATCACTGCTG | 17320 | 0.8205800724119274 | No Hit |
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 12568 | 0.5954417061243131 | No Hit |
TACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 12282 | 0.5818917118570031 | No Hit |
AACGAGTGGAATCACTGCTGAGTACATGGGGGTTAAGCGACTAAGCGTAC | 6366 | 0.3016058164534833 | No Hit |
AACGTGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 4856 | 0.2300656369302725 | No Hit |
AATGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 4267 | 0.20216022915598694 | No Hit |
ACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 4263 | 0.20197071874665395 | No Hit |
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 3642 | 0.17254922769770437 | No Hit |
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3573 | 0.16928017313670998 | No Hit |
ATCGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 3462 | 0.164021259277719 | No Hit |
AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 3303 | 0.1564882205067319 | No Hit |
AACGAGTGGAATCACTGCTGAGTACATGGGGGAACAAGCGAATAAGTGCA | 3041 | 0.14407528869541983 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2839 | 0.1345050130241029 | No Hit |
AAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2267 | 0.10740502448948264 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACGAGT | 3020 | 0.0 | 85.88076 | 1 |
AACGTGT | 1365 | 0.0 | 75.17528 | 1 |
CGTGTGG | 1535 | 0.0 | 73.50181 | 3 |
ATCGAGT | 1080 | 0.0 | 71.041985 | 1 |
ACGTGTG | 1590 | 0.0 | 67.12362 | 2 |
TCGAGTG | 1185 | 0.0 | 66.25898 | 2 |
GTGGAAT | 54415 | 0.0 | 66.20658 | 6 |
TGGAATC | 54890 | 0.0 | 65.571396 | 7 |
GGAATCA | 55405 | 0.0 | 64.96884 | 8 |
GAATCAC | 55500 | 0.0 | 64.857635 | 9 |
ACGAGTG | 51720 | 0.0 | 63.81536 | 2 |
AACGAGT | 47765 | 0.0 | 63.582237 | 1 |
AGTGGAA | 54905 | 0.0 | 63.54533 | 5 |
CGAGTGG | 53595 | 0.0 | 63.540314 | 3 |
GAGTGGA | 55350 | 0.0 | 63.03444 | 4 |
AGCGAGT | 665 | 0.0 | 51.67166 | 1 |
ATGAGTG | 1830 | 0.0 | 50.099125 | 2 |
TGAGTGG | 1945 | 0.0 | 49.79007 | 3 |
GCGAGTG | 735 | 0.0 | 49.254967 | 2 |
AATGAGT | 1685 | 0.0 | 49.165897 | 1 |