Basic Statistics
Measure | Value |
---|---|
Filename | SRR2132759_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1329315 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 100496 | 7.559983901483094 | No Hit |
AACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 99151 | 7.4588039704659925 | No Hit |
AACGAGTGGAATCACTGCTGAGTACATGGGAACGAGTGGAATCACTGCTG | 10192 | 0.7667106742946554 | No Hit |
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 8112 | 0.6102391081120728 | No Hit |
TACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 7880 | 0.592786510345554 | No Hit |
AACGTGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 3360 | 0.2527617607564799 | No Hit |
AATGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 2829 | 0.21281637535121473 | No Hit |
ACGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 2716 | 0.20431575661148788 | No Hit |
AACGAGTGGAATCACTGCTGAGTACATGGGGGTTAAGCGACTAAGCGTAC | 2637 | 0.19837284616513015 | No Hit |
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2553 | 0.19205380214621817 | No Hit |
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2436 | 0.1832522765484479 | No Hit |
ATCGAGTGGAATCACTGCTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 2258 | 0.1698619213655153 | No Hit |
AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2110 | 0.15872836761790846 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2005 | 0.1508295625942685 | No Hit |
AACGAGTGGAATCACTGCTGAGTACATGGGGGAACAAGCGAATAAGTGCA | 1776 | 0.13360264497128221 | No Hit |
AAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1407 | 0.10584398731677593 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACGAGT | 1805 | 0.0 | 86.62072 | 1 |
AACGTGT | 915 | 0.0 | 71.026245 | 1 |
ATCGAGT | 660 | 0.0 | 70.640236 | 1 |
ACGTGTG | 1015 | 0.0 | 68.09657 | 2 |
GTGGAAT | 34735 | 0.0 | 66.93047 | 6 |
TGGAATC | 35075 | 0.0 | 66.248344 | 7 |
GAATCAC | 35230 | 0.0 | 66.12781 | 9 |
GGAATCA | 35425 | 0.0 | 65.737274 | 8 |
CGTGTGG | 1100 | 0.0 | 64.971794 | 3 |
CGAGTGG | 33850 | 0.0 | 64.90992 | 3 |
ACGAGTG | 32915 | 0.0 | 64.83959 | 2 |
AACGAGT | 30435 | 0.0 | 64.802864 | 1 |
AGTGGAA | 34790 | 0.0 | 64.71898 | 5 |
GAGTGGA | 35170 | 0.0 | 64.16676 | 4 |
TCGAGTG | 770 | 0.0 | 63.506268 | 2 |
ATGAGTG | 1155 | 0.0 | 55.771523 | 2 |
TGAGTGG | 1265 | 0.0 | 54.26706 | 3 |
AATGAGT | 1115 | 0.0 | 52.373028 | 1 |
GTGTGGA | 1575 | 0.0 | 48.06031 | 4 |
AGCGAGT | 365 | 0.0 | 43.86791 | 1 |